data_4EH3 # _model_server_result.job_id 71aBeD0CQvXymTcUb_U3Dw _model_server_result.datetime_utc '2024-12-17 06:29:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eh3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4EH3 # _exptl.entry_id 4EH3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 272.253 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NARINGENIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EH3 _cell.length_a 65.71 _cell.length_b 74.7 _cell.length_c 77.71 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EH3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H12 O5' _chem_comp.formula_weight 272.253 _chem_comp.id NAR _chem_comp.mon_nstd_flag . _chem_comp.name NARINGENIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAR doub 277 n y C1 C6 NAR sing 278 n y C1 H11 NAR sing 279 n n C2 C3 NAR sing 280 n y C2 O4 NAR sing 281 n n C3 C4 NAR doub 282 n y C3 H31 NAR sing 283 n n C4 C5 NAR sing 284 n y C4 O5 NAR sing 285 n n C5 C6 NAR doub 286 n y C5 C7 NAR sing 287 n n C6 O1 NAR sing 288 n n C7 C8 NAR sing 289 n n C7 O2 NAR doub 290 n n C8 C9 NAR sing 291 n n C8 H81 NAR sing 292 n n C8 H82 NAR sing 293 n n C9 O1 NAR sing 294 n n C9 C10 NAR sing 295 n n C9 H9 NAR sing 296 n n C10 C11 NAR sing 297 n y C10 C15 NAR doub 298 n y C11 C12 NAR doub 299 n y C11 H111 NAR sing 300 n n C12 C13 NAR sing 301 n y C12 H121 NAR sing 302 n n C13 C14 NAR doub 303 n y C13 O3 NAR sing 304 n n C14 C15 NAR sing 305 n y C14 H141 NAR sing 306 n n C15 H151 NAR sing 307 n n O3 HO3 NAR sing 308 n n O4 H41 NAR sing 309 n n O5 H51 NAR sing 310 n n # _atom_sites.entry_id 4EH3 _atom_sites.fract_transf_matrix[1][1] 0.015218 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAR A 1 401 1 NAR DRG . C 3 IRG A 1 402 1 IRG MGD . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 5 HOH HOH . D 4 HOH A 6 506 6 HOH HOH . D 4 HOH A 7 507 7 HOH HOH . D 4 HOH A 8 508 8 HOH HOH . D 4 HOH A 9 509 9 HOH HOH . D 4 HOH A 10 510 10 HOH HOH . D 4 HOH A 11 511 11 HOH HOH . D 4 HOH A 12 512 12 HOH HOH . D 4 HOH A 13 513 13 HOH HOH . D 4 HOH A 14 514 14 HOH HOH . D 4 HOH A 15 515 16 HOH HOH . D 4 HOH A 16 516 17 HOH HOH . D 4 HOH A 17 517 18 HOH HOH . D 4 HOH A 18 518 19 HOH HOH . D 4 HOH A 19 519 20 HOH HOH . D 4 HOH A 20 520 21 HOH HOH . D 4 HOH A 21 521 22 HOH HOH . D 4 HOH A 22 522 23 HOH HOH . D 4 HOH A 23 523 24 HOH HOH . D 4 HOH A 24 524 25 HOH HOH . D 4 HOH A 25 525 26 HOH HOH . D 4 HOH A 26 526 27 HOH HOH . D 4 HOH A 27 527 28 HOH HOH . D 4 HOH A 28 528 29 HOH HOH . D 4 HOH A 29 529 30 HOH HOH . D 4 HOH A 30 530 31 HOH HOH . D 4 HOH A 31 531 32 HOH HOH . D 4 HOH A 32 532 33 HOH HOH . D 4 HOH A 33 533 34 HOH HOH . D 4 HOH A 34 534 35 HOH HOH . D 4 HOH A 35 535 37 HOH HOH . D 4 HOH A 36 536 38 HOH HOH . D 4 HOH A 37 537 39 HOH HOH . D 4 HOH A 38 538 40 HOH HOH . D 4 HOH A 39 539 43 HOH HOH . D 4 HOH A 40 540 45 HOH HOH . D 4 HOH A 41 541 46 HOH HOH . D 4 HOH A 42 542 49 HOH HOH . D 4 HOH A 43 543 50 HOH HOH . D 4 HOH A 44 544 51 HOH HOH . D 4 HOH A 45 545 52 HOH HOH . D 4 HOH A 46 546 53 HOH HOH . D 4 HOH A 47 547 54 HOH HOH . D 4 HOH A 48 548 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAR . . . B 2 -1.416 -0.874 -23.96 1 117 ? C1 NAR 401 A 1 HETATM 2 C C2 NAR . . . B 2 -0.541 -0.305 -24.891 1 117.35 ? C2 NAR 401 A 1 HETATM 3 C C3 NAR . . . B 2 -0.364 1.071 -24.942 1 117.1 ? C3 NAR 401 A 1 HETATM 4 C C4 NAR . . . B 2 -1.066 1.887 -24.064 1 117.09 ? C4 NAR 401 A 1 HETATM 5 C C5 NAR . . . B 2 -1.949 1.329 -23.139 1 116.65 ? C5 NAR 401 A 1 HETATM 6 C C6 NAR . . . B 2 -2.122 -0.057 -23.078 1 116.61 ? C6 NAR 401 A 1 HETATM 7 C C7 NAR . . . B 2 -2.65 2.105 -22.217 1 115.96 ? C7 NAR 401 A 1 HETATM 8 C C8 NAR . . . B 2 -3.024 1.527 -20.853 1 115.35 ? C8 NAR 401 A 1 HETATM 9 C C9 NAR . . . B 2 -2.668 0.007 -20.836 1 115.2 ? C9 NAR 401 A 1 HETATM 10 O O1 NAR . . . B 2 -2.979 -0.587 -22.145 1 115.98 ? O1 NAR 401 A 1 HETATM 11 O O2 NAR . . . B 2 -2.935 3.274 -22.466 1 115.51 ? O2 NAR 401 A 1 HETATM 12 C C10 NAR . . . B 2 -3.316 -0.65 -19.611 1 114.42 ? C10 NAR 401 A 1 HETATM 13 C C11 NAR . . . B 2 -4.682 -0.495 -19.377 1 114.11 ? C11 NAR 401 A 1 HETATM 14 C C12 NAR . . . B 2 -5.271 -1.075 -18.26 1 113.67 ? C12 NAR 401 A 1 HETATM 15 C C13 NAR . . . B 2 -4.485 -1.809 -17.379 1 113.76 ? C13 NAR 401 A 1 HETATM 16 C C14 NAR . . . B 2 -3.115 -1.967 -17.603 1 114.16 ? C14 NAR 401 A 1 HETATM 17 C C15 NAR . . . B 2 -2.529 -1.385 -18.725 1 114.16 ? C15 NAR 401 A 1 HETATM 18 O O3 NAR . . . B 2 -5.068 -2.373 -16.293 1 113.81 ? O3 NAR 401 A 1 HETATM 19 O O4 NAR . . . B 2 0.153 -1.084 -25.762 1 117.75 ? O4 NAR 401 A 1 HETATM 20 O O5 NAR . . . B 2 -0.883 3.226 -24.122 1 117.7 ? O5 NAR 401 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 75 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 1198 _model_server_stats.encode_time_ms 36 _model_server_stats.element_count 20 #