data_4EH5 # _model_server_result.job_id 84P0ELuxwYeynys5XhtCkg _model_server_result.datetime_utc '2024-12-02 23:36:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eh5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4EH5 # _exptl.entry_id 4EH5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 213.232 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'benzyl pyridine-3-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EH5 _cell.length_a 65.08 _cell.length_b 74.77 _cell.length_c 77.63 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EH5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H11 N O2' _chem_comp.formula_weight 213.232 _chem_comp.id 0OM _chem_comp.mon_nstd_flag . _chem_comp.name 'benzyl pyridine-3-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Benzyl nicotinate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAL CAJ 0OM doub 1 n y NAL CAF 0OM sing 2 n y CAJ CAP 0OM sing 3 n y OAA CAN 0OM doub 4 n n CAF CAE 0OM doub 5 n y CAP CAN 0OM sing 6 n n CAP CAI 0OM doub 7 n y CAN OAM 0OM sing 8 n n CAE CAI 0OM sing 9 n y OAM CAK 0OM sing 10 n n CAK CAO 0OM sing 11 n n CAO CAH 0OM doub 12 n y CAO CAG 0OM sing 13 n y CAH CAD 0OM sing 14 n y CAG CAC 0OM doub 15 n y CAD CAB 0OM doub 16 n y CAC CAB 0OM sing 17 n y CAG H1 0OM sing 18 n n CAC H2 0OM sing 19 n n CAB H3 0OM sing 20 n n CAD H4 0OM sing 21 n n CAH H5 0OM sing 22 n n CAK H6 0OM sing 23 n n CAK H7 0OM sing 24 n n CAI H8 0OM sing 25 n n CAE H9 0OM sing 26 n n CAF H10 0OM sing 27 n n CAJ H11 0OM sing 28 n n # _atom_sites.entry_id 4EH5 _atom_sites.fract_transf_matrix[1][1] 0.015366 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013374 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IRG A 1 401 1 IRG MGD . C 3 0OM A 1 402 1 0OM DRG . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 3 HOH HOH . D 4 HOH A 4 504 4 HOH HOH . D 4 HOH A 5 505 6 HOH HOH . D 4 HOH A 6 506 7 HOH HOH . D 4 HOH A 7 507 8 HOH HOH . D 4 HOH A 8 508 9 HOH HOH . D 4 HOH A 9 509 10 HOH HOH . D 4 HOH A 10 510 11 HOH HOH . D 4 HOH A 11 511 13 HOH HOH . D 4 HOH A 12 512 14 HOH HOH . D 4 HOH A 13 513 15 HOH HOH . D 4 HOH A 14 514 17 HOH HOH . D 4 HOH A 15 515 18 HOH HOH . D 4 HOH A 16 516 19 HOH HOH . D 4 HOH A 17 517 20 HOH HOH . D 4 HOH A 18 518 21 HOH HOH . D 4 HOH A 19 519 22 HOH HOH . D 4 HOH A 20 520 23 HOH HOH . D 4 HOH A 21 521 24 HOH HOH . D 4 HOH A 22 522 25 HOH HOH . D 4 HOH A 23 523 26 HOH HOH . D 4 HOH A 24 524 28 HOH HOH . D 4 HOH A 25 525 29 HOH HOH . D 4 HOH A 26 526 30 HOH HOH . D 4 HOH A 27 527 31 HOH HOH . D 4 HOH A 28 528 32 HOH HOH . D 4 HOH A 29 529 33 HOH HOH . D 4 HOH A 30 530 34 HOH HOH . D 4 HOH A 31 531 35 HOH HOH . D 4 HOH A 32 532 36 HOH HOH . D 4 HOH A 33 533 37 HOH HOH . D 4 HOH A 34 534 38 HOH HOH . D 4 HOH A 35 535 39 HOH HOH . D 4 HOH A 36 536 40 HOH HOH . D 4 HOH A 37 537 41 HOH HOH . D 4 HOH A 38 538 42 HOH HOH . D 4 HOH A 39 539 43 HOH HOH . D 4 HOH A 40 540 44 HOH HOH . D 4 HOH A 41 541 45 HOH HOH . D 4 HOH A 42 542 46 HOH HOH . D 4 HOH A 43 543 47 HOH HOH . D 4 HOH A 44 544 48 HOH HOH . D 4 HOH A 45 545 49 HOH HOH . D 4 HOH A 46 546 51 HOH HOH . D 4 HOH A 47 547 52 HOH HOH . D 4 HOH A 48 548 53 HOH HOH . D 4 HOH A 49 549 54 HOH HOH . D 4 HOH A 50 550 55 HOH HOH . D 4 HOH A 51 551 56 HOH HOH . D 4 HOH A 52 552 57 HOH HOH . D 4 HOH A 53 553 58 HOH HOH . D 4 HOH A 54 554 59 HOH HOH . D 4 HOH A 55 555 60 HOH HOH . D 4 HOH A 56 556 61 HOH HOH . D 4 HOH A 57 557 62 HOH HOH . D 4 HOH A 58 558 63 HOH HOH . D 4 HOH A 59 559 64 HOH HOH . D 4 HOH A 60 560 65 HOH HOH . D 4 HOH A 61 561 66 HOH HOH . D 4 HOH A 62 562 67 HOH HOH . D 4 HOH A 63 563 69 HOH HOH . D 4 HOH A 64 564 70 HOH HOH . D 4 HOH A 65 565 71 HOH HOH . D 4 HOH A 66 566 72 HOH HOH . D 4 HOH A 67 567 73 HOH HOH . D 4 HOH A 68 568 75 HOH HOH . D 4 HOH A 69 569 76 HOH HOH . D 4 HOH A 70 570 77 HOH HOH . D 4 HOH A 71 571 78 HOH HOH . D 4 HOH A 72 572 79 HOH HOH . D 4 HOH A 73 573 80 HOH HOH . D 4 HOH A 74 574 81 HOH HOH . D 4 HOH A 75 575 85 HOH HOH . D 4 HOH A 76 576 86 HOH HOH . D 4 HOH A 77 577 87 HOH HOH . D 4 HOH A 78 578 89 HOH HOH . D 4 HOH A 79 579 91 HOH HOH . D 4 HOH A 80 580 92 HOH HOH . D 4 HOH A 81 581 93 HOH HOH . D 4 HOH A 82 582 97 HOH HOH . D 4 HOH A 83 583 99 HOH HOH . D 4 HOH A 84 584 100 HOH HOH . D 4 HOH A 85 585 106 HOH HOH . D 4 HOH A 86 586 107 HOH HOH . D 4 HOH A 87 587 108 HOH HOH . D 4 HOH A 88 588 110 HOH HOH . D 4 HOH A 89 589 111 HOH HOH . D 4 HOH A 90 590 112 HOH HOH . D 4 HOH A 91 591 113 HOH HOH . D 4 HOH A 92 592 114 HOH HOH . D 4 HOH A 93 593 115 HOH HOH . D 4 HOH A 94 594 116 HOH HOH . D 4 HOH A 95 595 117 HOH HOH . D 4 HOH A 96 596 118 HOH HOH . D 4 HOH A 97 597 119 HOH HOH . D 4 HOH A 98 598 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAG 0OM . . . C 3 -4.012 -1.351 -17.539 1 63.08 ? CAG 0OM 402 A 1 HETATM 2 C CAC 0OM . . . C 3 -4.475 -1.126 -16.246 1 62.31 ? CAC 0OM 402 A 1 HETATM 3 C CAB 0OM . . . C 3 -5.726 -0.547 -16.04 1 62.19 ? CAB 0OM 402 A 1 HETATM 4 C CAD 0OM . . . C 3 -6.526 -0.193 -17.128 1 62.68 ? CAD 0OM 402 A 1 HETATM 5 C CAH 0OM . . . C 3 -6.065 -0.421 -18.423 1 63.41 ? CAH 0OM 402 A 1 HETATM 6 C CAO 0OM . . . C 3 -4.81 -0.999 -18.624 1 64.56 ? CAO 0OM 402 A 1 HETATM 7 C CAK 0OM . . . C 3 -4.346 -1.216 -19.915 1 68.33 ? CAK 0OM 402 A 1 HETATM 8 O OAM 0OM . . . C 3 -4.949 -0.508 -21.023 1 71.48 ? OAM 0OM 402 A 1 HETATM 9 C CAN 0OM . . . C 3 -4.119 -0.317 -22.093 1 73.66 ? CAN 0OM 402 A 1 HETATM 10 O OAA 0OM . . . C 3 -3.889 -1.221 -22.897 1 74.59 ? OAA 0OM 402 A 1 HETATM 11 C CAP 0OM . . . C 3 -3.514 1.064 -22.298 1 74.54 ? CAP 0OM 402 A 1 HETATM 12 C CAI 0OM . . . C 3 -2.557 1.541 -21.404 1 74.63 ? CAI 0OM 402 A 1 HETATM 13 C CAE 0OM . . . C 3 -2.027 2.804 -21.619 1 74.78 ? CAE 0OM 402 A 1 HETATM 14 C CAF 0OM . . . C 3 -2.486 3.523 -22.718 1 74.96 ? CAF 0OM 402 A 1 HETATM 15 N NAL 0OM . . . C 3 -3.407 3.052 -23.55 1 75.52 ? NAL 0OM 402 A 1 HETATM 16 C CAJ 0OM . . . C 3 -3.932 1.848 -23.375 1 75.16 ? CAJ 0OM 402 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 430 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 16 #