data_4EHQ # _model_server_result.job_id 0eb5Y76YbhFzm_43oD9dhw _model_server_result.datetime_utc '2024-12-26 19:05:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ehq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":205}' # _entry.id 4EHQ # _exptl.entry_id 4EHQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 86.089 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GAMMA-BUTYROLACTONE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.1 _cell.angle_gamma 90 _cell.entry_id 4EHQ _cell.length_a 100.074 _cell.length_b 24.709 _cell.length_c 60.903 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EHQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 20 A ASP 20 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc2 A OD1 ASP 22 A ASP 22 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc3 A OD1 ASP 24 A ASP 24 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc4 A O THR 26 A THR 26 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc5 A OE2 GLU 31 A GLU 31 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc6 A OE1 GLU 31 A GLU 31 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc7 A OD1 ASP 56 A ASP 56 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc8 A OD1 ASP 58 A ASP 58 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc9 A OD1 ASN 60 A ASN 60 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc10 A O THR 62 A THR 62 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc11 A OE1 GLU 67 A GLU 67 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc12 A OE2 GLU 67 A GLU 67 1_555 F CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc13 A OD1 ASP 93 A ASP 93 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc14 A OD1 ASP 95 A ASP 95 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc15 A OD1 ASN 97 A ASN 97 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc16 A O TYR 99 A TYR 99 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc17 A OE1 GLU 104 A GLU 104 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc18 A OE2 GLU 104 A GLU 104 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc19 A OD1 ASP 129 A ASP 129 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc20 A OD1 ASP 131 A ASP 131 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc21 A OD1 ASP 133 A ASP 133 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc22 A O GLN 135 A GLN 135 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc23 A OE1 GLU 140 A GLU 140 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc24 A OE2 GLU 140 A GLU 140 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc25 D CA CA . A CA 202 1_555 K O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc26 E CA CA . A CA 203 1_555 K O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc27 F CA CA . A CA 204 1_555 K O HOH . A HOH 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? # _chem_comp.formula 'C4 H6 O2' _chem_comp.formula_weight 86.089 _chem_comp.id GBL _chem_comp.mon_nstd_flag . _chem_comp.name GAMMA-BUTYROLACTONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DIHYDROFURAN-2(3H)-ONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA C GBL sing 70 n n CA CB GBL sing 71 n n CA HAC1 GBL sing 72 n n CA HAC2 GBL sing 73 n n C O GBL doub 74 n n C OD GBL sing 75 n n CB CG GBL sing 76 n n CB HBC1 GBL sing 77 n n CB HBC2 GBL sing 78 n n CG OD GBL sing 79 n n CG HGC1 GBL sing 80 n n CG HGC2 GBL sing 81 n n # _atom_sites.entry_id 4EHQ _atom_sites.fract_transf_matrix[1][1] 0.009993 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001779 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.040471 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016678 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 201 201 CA CA . D 3 CA A 1 202 202 CA CA . E 3 CA A 1 203 203 CA CA . F 3 CA A 1 204 204 CA CA . G 4 GBL A 1 205 1 GBL GBL . H 4 GBL A 1 206 3 GBL GBL . I 4 GBL A 1 207 4 GBL GBL . J 4 GBL G 1 101 2 GBL GBL . K 5 HOH A 1 301 1 HOH HOH . K 5 HOH A 2 302 2 HOH HOH . K 5 HOH A 3 303 3 HOH HOH . K 5 HOH A 4 304 4 HOH HOH . K 5 HOH A 5 305 5 HOH HOH . K 5 HOH A 6 306 6 HOH HOH . K 5 HOH A 7 307 7 HOH HOH . K 5 HOH A 8 308 8 HOH HOH . K 5 HOH A 9 309 10 HOH HOH . K 5 HOH A 10 310 11 HOH HOH . K 5 HOH A 11 311 12 HOH HOH . K 5 HOH A 12 312 14 HOH HOH . K 5 HOH A 13 313 15 HOH HOH . K 5 HOH A 14 314 16 HOH HOH . K 5 HOH A 15 315 17 HOH HOH . K 5 HOH A 16 316 18 HOH HOH . K 5 HOH A 17 317 19 HOH HOH . K 5 HOH A 18 318 20 HOH HOH . K 5 HOH A 19 319 21 HOH HOH . K 5 HOH A 20 320 22 HOH HOH . K 5 HOH A 21 321 23 HOH HOH . K 5 HOH A 22 322 24 HOH HOH . K 5 HOH A 23 323 26 HOH HOH . K 5 HOH A 24 324 27 HOH HOH . K 5 HOH A 25 325 28 HOH HOH . K 5 HOH A 26 326 29 HOH HOH . K 5 HOH A 27 327 31 HOH HOH . K 5 HOH A 28 328 32 HOH HOH . K 5 HOH A 29 329 33 HOH HOH . K 5 HOH A 30 330 35 HOH HOH . K 5 HOH A 31 331 38 HOH HOH . K 5 HOH A 32 332 39 HOH HOH . K 5 HOH A 33 333 40 HOH HOH . K 5 HOH A 34 334 41 HOH HOH . K 5 HOH A 35 335 42 HOH HOH . K 5 HOH A 36 336 44 HOH HOH . K 5 HOH A 37 337 45 HOH HOH . K 5 HOH A 38 338 46 HOH HOH . K 5 HOH A 39 339 47 HOH HOH . K 5 HOH A 40 340 48 HOH HOH . K 5 HOH A 41 341 49 HOH HOH . K 5 HOH A 42 342 50 HOH HOH . K 5 HOH A 43 343 51 HOH HOH . K 5 HOH A 44 344 52 HOH HOH . K 5 HOH A 45 345 53 HOH HOH . K 5 HOH A 46 346 54 HOH HOH . K 5 HOH A 47 347 55 HOH HOH . K 5 HOH A 48 348 57 HOH HOH . K 5 HOH A 49 349 58 HOH HOH . K 5 HOH A 50 350 59 HOH HOH . K 5 HOH A 51 351 60 HOH HOH . K 5 HOH A 52 352 61 HOH HOH . K 5 HOH A 53 353 62 HOH HOH . K 5 HOH A 54 354 63 HOH HOH . K 5 HOH A 55 355 64 HOH HOH . K 5 HOH A 56 356 65 HOH HOH . K 5 HOH A 57 357 66 HOH HOH . K 5 HOH A 58 358 67 HOH HOH . K 5 HOH A 59 359 68 HOH HOH . K 5 HOH A 60 360 69 HOH HOH . K 5 HOH A 61 361 70 HOH HOH . K 5 HOH A 62 362 71 HOH HOH . K 5 HOH A 63 363 72 HOH HOH . K 5 HOH A 64 364 73 HOH HOH . K 5 HOH A 65 365 74 HOH HOH . K 5 HOH A 66 366 75 HOH HOH . K 5 HOH A 67 367 76 HOH HOH . K 5 HOH A 68 368 77 HOH HOH . K 5 HOH A 69 369 78 HOH HOH . K 5 HOH A 70 370 79 HOH HOH . K 5 HOH A 71 371 80 HOH HOH . K 5 HOH A 72 372 82 HOH HOH . K 5 HOH A 73 373 83 HOH HOH . K 5 HOH A 74 374 84 HOH HOH . K 5 HOH A 75 375 85 HOH HOH . K 5 HOH A 76 376 86 HOH HOH . K 5 HOH A 77 377 87 HOH HOH . K 5 HOH A 78 378 88 HOH HOH . L 5 HOH G 1 201 9 HOH HOH . L 5 HOH G 2 202 13 HOH HOH . L 5 HOH G 3 203 25 HOH HOH . L 5 HOH G 4 204 30 HOH HOH . L 5 HOH G 5 205 34 HOH HOH . L 5 HOH G 6 206 36 HOH HOH . L 5 HOH G 7 207 37 HOH HOH . L 5 HOH G 8 208 43 HOH HOH . L 5 HOH G 9 209 56 HOH HOH . L 5 HOH G 10 210 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA GBL . . . G 4 -3.797 -14.076 12.06 1 19.21 ? CA GBL 205 A 1 HETATM 2 C C GBL . . . G 4 -2.4 -14.542 12.117 1 28.12 ? C GBL 205 A 1 HETATM 3 O O GBL . . . G 4 -2.016 -15.628 12.537 1 28.75 ? O GBL 205 A 1 HETATM 4 C CB GBL . . . G 4 -3.787 -12.756 11.395 1 26.41 ? CB GBL 205 A 1 HETATM 5 C CG GBL . . . G 4 -2.438 -12.721 10.735 1 32.24 ? CG GBL 205 A 1 HETATM 6 O OD GBL . . . G 4 -1.625 -13.625 11.436 1 35.89 ? OD GBL 205 A 1 HETATM 7 H HAC1 GBL . . . G 4 -4.417 -14.772 11.514 1 23 ? HAC1 GBL 205 A 1 HETATM 8 H HAC2 GBL . . . G 4 -4.208 -13.989 13.055 1 23 ? HAC2 GBL 205 A 1 HETATM 9 H HBC1 GBL . . . G 4 -3.878 -11.962 12.121 1 31.64 ? HBC1 GBL 205 A 1 HETATM 10 H HBC2 GBL . . . G 4 -4.573 -12.694 10.657 1 31.64 ? HBC2 GBL 205 A 1 HETATM 11 H HGC1 GBL . . . G 4 -2.029 -11.723 10.785 1 38.64 ? HGC1 GBL 205 A 1 HETATM 12 H HGC2 GBL . . . G 4 -2.522 -12.997 9.695 1 38.64 ? HGC2 GBL 205 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 12 #