data_4EI5 # _model_server_result.job_id CytJeuo-yJcNBmPNaOhW9g _model_server_result.datetime_utc '2024-11-29 03:41:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ei5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":408}' # _entry.id 4EI5 # _exptl.entry_id 4EI5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EI5 _cell.length_a 102.739 _cell.length_b 140.711 _cell.length_c 160.773 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EI5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,M,N,O 1 1 E,F,G,H,K,L,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide 7 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n I NAG 1 I 1 NAG A 304 NAG 5 n I NAG 2 I 2 NAG A 305 NAG 5 n I BMA 3 I 3 BMA A 306 BMA 5 n I MAN 4 I 4 MAN A 307 MAN 6 n J NAG 1 J 1 NAG A 310 NAG 6 n J NAG 2 J 2 NAG A 311 NAG 7 n K NAG 1 K 1 NAG E 304 NAG 7 n K NAG 2 K 2 NAG E 305 NAG 7 n K BMA 3 K 3 BMA E 306 BMA 6 n L NAG 1 L 1 NAG E 310 NAG 6 n L NAG 2 L 2 NAG E 311 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf2 A SG CYS 208 A CYS 208 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 C SG CYS 24 C CYS 23 1_555 C SG CYS 90 C CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf5 C SG CYS 137 C CYS 136 1_555 C SG CYS 187 C CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 C SG CYS 162 C CYS 161 1_555 D SG CYS 172 D CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 D SG CYS 24 D CYS 23 1_555 D SG CYS 93 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 D SG CYS 146 D CYS 145 1_555 D SG CYS 211 D CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 E SG CYS 104 E CYS 104 1_555 E SG CYS 168 E CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf10 E SG CYS 208 E CYS 208 1_555 E SG CYS 263 E CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf11 F SG CYS 25 F CYS 25 1_555 F SG CYS 80 F CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 G SG CYS 24 G CYS 23 1_555 G SG CYS 90 G CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf13 G SG CYS 162 G CYS 161 1_555 H SG CYS 172 H CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf14 H SG CYS 24 H CYS 23 1_555 H SG CYS 93 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf15 H SG CYS 146 H CYS 145 1_555 H SG CYS 211 H CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 20 A ASN 20 1_555 M C1 NAG . A NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 A ND2 ASN 42 A ASN 42 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 A ND2 ASN 165 A ASN 165 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale4 E ND2 ASN 20 E ASN 20 1_555 P C1 NAG . E NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 E ND2 ASN 42 E ASN 42 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale6 E ND2 ASN 165 E ASN 165 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale7 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale8 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale9 I O3 BMA . I BMA 3 1_555 I C1 MAN . I MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale10 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale11 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? covale ? covale12 K O4 NAG . K NAG 2 1_555 K C1 BMA . K BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale13 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CA FLC sing 259 n n CAC OA1 FLC doub 260 n n CAC OA2 FLC sing 261 n n CA CB FLC sing 262 n n CA HA1 FLC sing 263 n n CA HA2 FLC sing 264 n n CB CBC FLC sing 265 n n CB CG FLC sing 266 n n CB OHB FLC sing 267 n n CBC OB1 FLC doub 268 n n CBC OB2 FLC sing 269 n n CG CGC FLC sing 270 n n CG HG1 FLC sing 271 n n CG HG2 FLC sing 272 n n CGC OG1 FLC doub 273 n n CGC OG2 FLC sing 274 n n OHB HOB FLC sing 275 n n # _atom_sites.entry_id 4EI5 _atom_sites.fract_transf_matrix[1][1] 0.009733 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 8 NAG A 1 405 309 NAG NAG . N 9 FLC A 1 408 1 FLC FLC . O 10 CIS A 1 409 1001 CIS CIS . P 8 NAG E 1 404 309 NAG NAG . Q 10 CIS E 1 407 1002 CIS CIS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . N 9 37.079 -8.959 32.042 1 70.73 ? CAC FLC 408 A 1 HETATM 2 C CA FLC . . . N 9 36.741 -9.066 33.526 1 64.81 ? CA FLC 408 A 1 HETATM 3 C CB FLC . . . N 9 37.395 -10.257 34.234 1 57.85 ? CB FLC 408 A 1 HETATM 4 C CBC FLC . . . N 9 37.22 -11.482 33.316 1 42.35 ? CBC FLC 408 A 1 HETATM 5 C CG FLC . . . N 9 36.784 -10.523 35.617 1 59.35 ? CG FLC 408 A 1 HETATM 6 C CGC FLC . . . N 9 37.531 -11.571 36.435 1 63.2 ? CGC FLC 408 A 1 HETATM 7 O OA1 FLC . . . N 9 37.625 -9.946 31.459 1 64.22 ? OA1 FLC 408 A 1 HETATM 8 O OA2 FLC . . . N 9 36.757 -7.894 31.462 1 77.74 ? OA2 FLC 408 A 1 HETATM 9 O OB1 FLC . . . N 9 36.109 -11.72 32.893 1 35.05 ? OB1 FLC 408 A 1 HETATM 10 O OB2 FLC . . . N 9 38.235 -12.026 32.949 1 39.93 ? OB2 FLC 408 A 1 HETATM 11 O OG1 FLC . . . N 9 38.744 -11.385 36.666 1 66.36 ? OG1 FLC 408 A 1 HETATM 12 O OG2 FLC . . . N 9 36.909 -12.583 36.815 1 64.07 ? OG2 FLC 408 A 1 HETATM 13 O OHB FLC . . . N 9 38.795 -10.013 34.377 1 64 ? OHB FLC 408 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 13 #