data_4EID # _model_server_result.job_id M8h6AVTJORScbjP4rB6H6w _model_server_result.datetime_utc '2025-02-27 00:47:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 4EID # _exptl.entry_id 4EID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.16 _cell.angle_gamma 90 _cell.entry_id 4EID _cell.length_a 31.781 _cell.length_b 27.637 _cell.length_c 44.099 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EID _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 14 A CYS 14 1_555 B CAB HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? covale ? covale2 A SG CYS 17 A CYS 17 1_555 B CAC HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc1 A NE2 HIS 18 A HIS 18 1_555 B FE HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc2 A SD MET 65 A MET 65 1_555 B FE HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 4EID _atom_sites.fract_transf_matrix[1][1] 0.031465 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00621 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036183 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 101 94 HEC HEM . C 3 MES A 1 102 1 MES MES . D 4 HOH A 1 201 2 HOH HOH . D 4 HOH A 2 202 3 HOH HOH . D 4 HOH A 3 203 4 HOH HOH . D 4 HOH A 4 204 5 HOH HOH . D 4 HOH A 5 205 6 HOH HOH . D 4 HOH A 6 206 7 HOH HOH . D 4 HOH A 7 207 8 HOH HOH . D 4 HOH A 8 208 9 HOH HOH . D 4 HOH A 9 209 10 HOH HOH . D 4 HOH A 10 210 11 HOH HOH . D 4 HOH A 11 211 12 HOH HOH . D 4 HOH A 12 212 13 HOH HOH . D 4 HOH A 13 213 14 HOH HOH . D 4 HOH A 14 214 15 HOH HOH . D 4 HOH A 15 215 16 HOH HOH . D 4 HOH A 16 216 17 HOH HOH . D 4 HOH A 17 217 18 HOH HOH . D 4 HOH A 18 218 19 HOH HOH . D 4 HOH A 19 219 20 HOH HOH . D 4 HOH A 20 220 21 HOH HOH . D 4 HOH A 21 221 22 HOH HOH . D 4 HOH A 22 222 23 HOH HOH . D 4 HOH A 23 223 24 HOH HOH . D 4 HOH A 24 224 25 HOH HOH . D 4 HOH A 25 225 26 HOH HOH . D 4 HOH A 26 226 27 HOH HOH . D 4 HOH A 27 227 28 HOH HOH . D 4 HOH A 28 228 29 HOH HOH . D 4 HOH A 29 229 30 HOH HOH . D 4 HOH A 30 230 31 HOH HOH . D 4 HOH A 31 231 32 HOH HOH . D 4 HOH A 32 232 33 HOH HOH . D 4 HOH A 33 233 34 HOH HOH . D 4 HOH A 34 234 35 HOH HOH . D 4 HOH A 35 235 36 HOH HOH . D 4 HOH A 36 236 37 HOH HOH . D 4 HOH A 37 237 38 HOH HOH . D 4 HOH A 38 238 39 HOH HOH . D 4 HOH A 39 239 40 HOH HOH . D 4 HOH A 40 240 41 HOH HOH . D 4 HOH A 41 241 42 HOH HOH . D 4 HOH A 42 242 43 HOH HOH . D 4 HOH A 43 243 44 HOH HOH . D 4 HOH A 44 244 45 HOH HOH . D 4 HOH A 45 245 46 HOH HOH . D 4 HOH A 46 246 47 HOH HOH . D 4 HOH A 47 247 48 HOH HOH . D 4 HOH A 48 248 49 HOH HOH . D 4 HOH A 49 249 50 HOH HOH . D 4 HOH A 50 250 51 HOH HOH . D 4 HOH A 51 251 52 HOH HOH . D 4 HOH A 52 252 53 HOH HOH . D 4 HOH A 53 253 54 HOH HOH . D 4 HOH A 54 254 55 HOH HOH . D 4 HOH A 55 255 56 HOH HOH . D 4 HOH A 56 256 57 HOH HOH . D 4 HOH A 57 257 58 HOH HOH . D 4 HOH A 58 258 59 HOH HOH . D 4 HOH A 59 259 60 HOH HOH . D 4 HOH A 60 260 61 HOH HOH . D 4 HOH A 61 261 62 HOH HOH . D 4 HOH A 62 262 63 HOH HOH . D 4 HOH A 63 263 64 HOH HOH . D 4 HOH A 64 264 65 HOH HOH . D 4 HOH A 65 265 66 HOH HOH . D 4 HOH A 66 266 67 HOH HOH . D 4 HOH A 67 267 68 HOH HOH . D 4 HOH A 68 268 69 HOH HOH . D 4 HOH A 69 269 70 HOH HOH . D 4 HOH A 70 270 71 HOH HOH . D 4 HOH A 71 271 72 HOH HOH . D 4 HOH A 72 272 73 HOH HOH . D 4 HOH A 73 273 74 HOH HOH . D 4 HOH A 74 274 75 HOH HOH . D 4 HOH A 75 275 76 HOH HOH . D 4 HOH A 76 276 77 HOH HOH . D 4 HOH A 77 277 78 HOH HOH . D 4 HOH A 78 278 79 HOH HOH . D 4 HOH A 79 279 80 HOH HOH . D 4 HOH A 80 280 81 HOH HOH . D 4 HOH A 81 281 82 HOH HOH . D 4 HOH A 82 282 83 HOH HOH . D 4 HOH A 83 283 84 HOH HOH . D 4 HOH A 84 284 85 HOH HOH . D 4 HOH A 85 285 86 HOH HOH . D 4 HOH A 86 286 87 HOH HOH . D 4 HOH A 87 287 88 HOH HOH . D 4 HOH A 88 288 89 HOH HOH . D 4 HOH A 89 289 90 HOH HOH . D 4 HOH A 90 290 91 HOH HOH . D 4 HOH A 91 291 92 HOH HOH . D 4 HOH A 92 292 93 HOH HOH . D 4 HOH A 93 293 94 HOH HOH . D 4 HOH A 94 294 95 HOH HOH . D 4 HOH A 95 295 96 HOH HOH . D 4 HOH A 96 296 97 HOH HOH . D 4 HOH A 97 297 98 HOH HOH . D 4 HOH A 98 298 99 HOH HOH . D 4 HOH A 99 299 100 HOH HOH . D 4 HOH A 100 300 101 HOH HOH . D 4 HOH A 101 301 102 HOH HOH . D 4 HOH A 102 302 103 HOH HOH . D 4 HOH A 103 303 104 HOH HOH . D 4 HOH A 104 304 105 HOH HOH . D 4 HOH A 105 305 106 HOH HOH . D 4 HOH A 106 306 107 HOH HOH . D 4 HOH A 107 307 108 HOH HOH . D 4 HOH A 108 308 109 HOH HOH . D 4 HOH A 109 309 110 HOH HOH . D 4 HOH A 110 310 111 HOH HOH . D 4 HOH A 111 311 112 HOH HOH . D 4 HOH A 112 312 113 HOH HOH . D 4 HOH A 113 313 114 HOH HOH . D 4 HOH A 114 314 115 HOH HOH . D 4 HOH A 115 315 116 HOH HOH . D 4 HOH A 116 316 117 HOH HOH . D 4 HOH A 117 317 118 HOH HOH . D 4 HOH A 118 318 119 HOH HOH . D 4 HOH A 119 319 120 HOH HOH . D 4 HOH A 120 320 121 HOH HOH . D 4 HOH A 121 321 122 HOH HOH . D 4 HOH A 122 322 123 HOH HOH . D 4 HOH A 123 323 124 HOH HOH . D 4 HOH A 124 324 125 HOH HOH . D 4 HOH A 125 325 126 HOH HOH . D 4 HOH A 126 326 127 HOH HOH . D 4 HOH A 127 327 128 HOH HOH . D 4 HOH A 128 328 129 HOH HOH . D 4 HOH A 129 329 130 HOH HOH . D 4 HOH A 130 330 131 HOH HOH . D 4 HOH A 131 331 132 HOH HOH . D 4 HOH A 132 332 133 HOH HOH . D 4 HOH A 133 333 134 HOH HOH . D 4 HOH A 134 334 135 HOH HOH . D 4 HOH A 135 335 136 HOH HOH . D 4 HOH A 136 336 137 HOH HOH . D 4 HOH A 137 337 138 HOH HOH . D 4 HOH A 138 338 139 HOH HOH . D 4 HOH A 139 339 140 HOH HOH . D 4 HOH A 140 340 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 3.213 2.854 6.322 1 6.26 ? FE HEC 101 A 1 HETATM 2 C CHA HEC . . . B 2 5.912 4.252 7.75 1 6.63 ? CHA HEC 101 A 1 HETATM 3 C CHB HEC . . . B 2 2.648 1.042 9.147 1 5.92 ? CHB HEC 101 A 1 HETATM 4 C CHC HEC . . . B 2 0.198 1.989 5.087 1 6.47 ? CHC HEC 101 A 1 HETATM 5 C CHD HEC . . . B 2 4.088 4.182 3.293 1 7.62 ? CHD HEC 101 A 1 HETATM 6 N NA HEC . . . B 2 4.099 2.678 8.043 1 6.17 ? NA HEC 101 A 1 HETATM 7 C C1A HEC . . . B 2 5.268 3.327 8.476 1 6.98 ? C1A HEC 101 A 1 HETATM 8 C C2A HEC . . . B 2 5.611 2.875 9.818 1 6.44 ? C2A HEC 101 A 1 HETATM 9 C C3A HEC . . . B 2 4.699 2.029 10.227 1 6.54 ? C3A HEC 101 A 1 HETATM 10 C C4A HEC . . . B 2 3.733 1.89 9.135 1 5.92 ? C4A HEC 101 A 1 HETATM 11 C CMA HEC . . . B 2 4.552 1.301 11.56 1 7.63 ? CMA HEC 101 A 1 HETATM 12 C CAA HEC . . . B 2 6.886 3.353 10.515 1 7.35 ? CAA HEC 101 A 1 HETATM 13 C CBA HEC . . . B 2 8.103 2.651 9.936 1 6.22 ? CBA HEC 101 A 1 HETATM 14 C CGA HEC . . . B 2 9.447 3.116 10.483 1 6.28 ? CGA HEC 101 A 1 HETATM 15 O O1A HEC . . . B 2 9.512 4.254 10.952 1 7.87 ? O1A HEC 101 A 1 HETATM 16 O O2A HEC . . . B 2 10.487 2.345 10.361 1 7.28 ? O2A HEC 101 A 1 HETATM 17 N NB HEC . . . B 2 1.724 1.7 6.992 1 5.9 ? NB HEC 101 A 1 HETATM 18 C C1B HEC . . . B 2 1.68 1 8.125 1 6.62 ? C1B HEC 101 A 1 HETATM 19 C C2B HEC . . . B 2 0.469 0.251 8.233 1 6.3 ? C2B HEC 101 A 1 HETATM 20 C C3B HEC . . . B 2 -0.225 0.518 7.085 1 5.94 ? C3B HEC 101 A 1 HETATM 21 C C4B HEC . . . B 2 0.555 1.435 6.321 1 6.11 ? C4B HEC 101 A 1 HETATM 22 C CMB HEC . . . B 2 0.138 -0.713 9.323 1 6.73 ? CMB HEC 101 A 1 HETATM 23 C CAB HEC . . . B 2 -1.653 0.024 6.7 1 6.81 ? CAB HEC 101 A 1 HETATM 24 C CBB HEC . . . B 2 -2.701 0.45 7.581 1 7.59 ? CBB HEC 101 A 1 HETATM 25 N NC HEC . . . B 2 2.318 3.065 4.597 1 6.18 ? NC HEC 101 A 1 HETATM 26 C C1C HEC . . . B 2 1.05 2.617 4.245 1 6.59 ? C1C HEC 101 A 1 HETATM 27 C C2C HEC . . . B 2 0.767 2.915 2.859 1 6.68 ? C2C HEC 101 A 1 HETATM 28 C C3C HEC . . . B 2 1.883 3.432 2.332 1 6.8 ? C3C HEC 101 A 1 HETATM 29 C C4C HEC . . . B 2 2.864 3.576 3.419 1 7.05 ? C4C HEC 101 A 1 HETATM 30 C CMC HEC . . . B 2 -0.556 2.6 2.152 1 8.78 ? CMC HEC 101 A 1 HETATM 31 C CAC HEC . . . B 2 2.178 3.772 0.872 1 8.02 ? CAC HEC 101 A 1 HETATM 32 C CBC HEC . . . B 2 1.399 4.696 0.124 1 9.16 ? CBC HEC 101 A 1 HETATM 33 N ND HEC . . . B 2 4.711 4.021 5.661 1 7.32 ? ND HEC 101 A 1 HETATM 34 C C1D HEC . . . B 2 4.888 4.495 4.386 1 7.4 ? C1D HEC 101 A 1 HETATM 35 C C2D HEC . . . B 2 6 5.394 4.328 1 7.41 ? C2D HEC 101 A 1 HETATM 36 C C3D HEC . . . B 2 6.473 5.466 5.688 1 7.63 ? C3D HEC 101 A 1 HETATM 37 C C4D HEC . . . B 2 5.691 4.579 6.456 1 6.12 ? C4D HEC 101 A 1 HETATM 38 C CMD HEC . . . B 2 6.483 6.177 3.152 1 8.73 ? CMD HEC 101 A 1 HETATM 39 C CAD HEC . . . B 2 7.613 6.324 6.166 1 7.28 ? CAD HEC 101 A 1 HETATM 40 C CBD HEC . . . B 2 7.041 7.527 6.894 1 8.13 ? CBD HEC 101 A 1 HETATM 41 C CGD HEC . . . B 2 8.212 8.46 7.25 1 9.19 ? CGD HEC 101 A 1 HETATM 42 O O1D HEC . . . B 2 8.537 9.322 6.441 1 13.07 ? O1D HEC 101 A 1 HETATM 43 O O2D HEC . . . B 2 8.751 8.3 8.338 1 11.05 ? O2D HEC 101 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #