data_4EJ8 # _model_server_result.job_id -3snppqgbeTpt4puUcBRZA _model_server_result.datetime_utc '2024-10-11 04:21:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ej8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":104}' # _entry.id 4EJ8 # _exptl.entry_id 4EJ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EJ8 _cell.length_a 28.947 _cell.length_b 66.533 _cell.length_c 91.713 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EJ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 112 n n C1 C2 EDO sing 113 n n C1 H11 EDO sing 114 n n C1 H12 EDO sing 115 n n O1 HO1 EDO sing 116 n n C2 O2 EDO sing 117 n n C2 H21 EDO sing 118 n n C2 H22 EDO sing 119 n n O2 HO2 EDO sing 120 n n # _atom_sites.entry_id 4EJ8 _atom_sites.fract_transf_matrix[1][1] 0.034546 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010904 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 101 1 DMS DMS . D 2 DMS A 1 102 4 DMS DMS . E 2 DMS A 1 103 5 DMS DMS . F 3 EDO A 1 104 2 EDO EDO . G 3 EDO A 1 105 4 EDO EDO . H 4 1F1 A 1 106 1 1F1 1F1 . I 2 DMS B 1 101 2 DMS DMS . J 2 DMS B 1 102 3 DMS DMS . K 3 EDO B 1 103 1 EDO EDO . L 3 EDO B 1 104 3 EDO EDO . M 5 HOH A 1 201 3 HOH HOH . M 5 HOH A 2 202 6 HOH HOH . M 5 HOH A 3 203 8 HOH HOH . M 5 HOH A 4 204 10 HOH HOH . M 5 HOH A 5 205 11 HOH HOH . M 5 HOH A 6 206 16 HOH HOH . M 5 HOH A 7 207 18 HOH HOH . M 5 HOH A 8 208 19 HOH HOH . M 5 HOH A 9 209 22 HOH HOH . M 5 HOH A 10 210 23 HOH HOH . M 5 HOH A 11 211 24 HOH HOH . M 5 HOH A 12 212 29 HOH HOH . M 5 HOH A 13 213 31 HOH HOH . M 5 HOH A 14 214 32 HOH HOH . M 5 HOH A 15 215 33 HOH HOH . M 5 HOH A 16 216 34 HOH HOH . M 5 HOH A 17 217 36 HOH HOH . M 5 HOH A 18 218 37 HOH HOH . M 5 HOH A 19 219 38 HOH HOH . M 5 HOH A 20 220 40 HOH HOH . M 5 HOH A 21 221 45 HOH HOH . M 5 HOH A 22 222 47 HOH HOH . M 5 HOH A 23 223 48 HOH HOH . M 5 HOH A 24 224 49 HOH HOH . M 5 HOH A 25 225 50 HOH HOH . M 5 HOH A 26 226 51 HOH HOH . M 5 HOH A 27 227 52 HOH HOH . M 5 HOH A 28 228 53 HOH HOH . M 5 HOH A 29 229 54 HOH HOH . M 5 HOH A 30 230 57 HOH HOH . M 5 HOH A 31 231 58 HOH HOH . M 5 HOH A 32 232 64 HOH HOH . M 5 HOH A 33 233 65 HOH HOH . M 5 HOH A 34 234 66 HOH HOH . M 5 HOH A 35 235 67 HOH HOH . M 5 HOH A 36 236 68 HOH HOH . M 5 HOH A 37 237 69 HOH HOH . M 5 HOH A 38 238 70 HOH HOH . M 5 HOH A 39 239 71 HOH HOH . M 5 HOH A 40 240 72 HOH HOH . M 5 HOH A 41 241 73 HOH HOH . M 5 HOH A 42 242 76 HOH HOH . M 5 HOH A 43 243 77 HOH HOH . M 5 HOH A 44 244 78 HOH HOH . M 5 HOH A 45 245 80 HOH HOH . M 5 HOH A 46 246 81 HOH HOH . M 5 HOH A 47 247 83 HOH HOH . M 5 HOH A 48 248 84 HOH HOH . M 5 HOH A 49 249 87 HOH HOH . M 5 HOH A 50 250 91 HOH HOH . M 5 HOH A 51 251 92 HOH HOH . M 5 HOH A 52 252 93 HOH HOH . M 5 HOH A 53 253 95 HOH HOH . M 5 HOH A 54 254 99 HOH HOH . M 5 HOH A 55 255 100 HOH HOH . M 5 HOH A 56 256 101 HOH HOH . M 5 HOH A 57 257 106 HOH HOH . M 5 HOH A 58 258 107 HOH HOH . M 5 HOH A 59 259 108 HOH HOH . M 5 HOH A 60 260 109 HOH HOH . M 5 HOH A 61 261 110 HOH HOH . M 5 HOH A 62 262 111 HOH HOH . M 5 HOH A 63 263 115 HOH HOH . M 5 HOH A 64 264 116 HOH HOH . M 5 HOH A 65 265 120 HOH HOH . N 5 HOH B 1 201 1 HOH HOH . N 5 HOH B 2 202 2 HOH HOH . N 5 HOH B 3 203 4 HOH HOH . N 5 HOH B 4 204 5 HOH HOH . N 5 HOH B 5 205 7 HOH HOH . N 5 HOH B 6 206 9 HOH HOH . N 5 HOH B 7 207 12 HOH HOH . N 5 HOH B 8 208 13 HOH HOH . N 5 HOH B 9 209 14 HOH HOH . N 5 HOH B 10 210 15 HOH HOH . N 5 HOH B 11 211 17 HOH HOH . N 5 HOH B 12 212 20 HOH HOH . N 5 HOH B 13 213 21 HOH HOH . N 5 HOH B 14 214 25 HOH HOH . N 5 HOH B 15 215 26 HOH HOH . N 5 HOH B 16 216 27 HOH HOH . N 5 HOH B 17 217 28 HOH HOH . N 5 HOH B 18 218 30 HOH HOH . N 5 HOH B 19 219 35 HOH HOH . N 5 HOH B 20 220 39 HOH HOH . N 5 HOH B 21 221 41 HOH HOH . N 5 HOH B 22 222 42 HOH HOH . N 5 HOH B 23 223 43 HOH HOH . N 5 HOH B 24 224 44 HOH HOH . N 5 HOH B 25 225 46 HOH HOH . N 5 HOH B 26 226 55 HOH HOH . N 5 HOH B 27 227 56 HOH HOH . N 5 HOH B 28 228 59 HOH HOH . N 5 HOH B 29 229 60 HOH HOH . N 5 HOH B 30 230 61 HOH HOH . N 5 HOH B 31 231 62 HOH HOH . N 5 HOH B 32 232 63 HOH HOH . N 5 HOH B 33 233 74 HOH HOH . N 5 HOH B 34 234 75 HOH HOH . N 5 HOH B 35 235 79 HOH HOH . N 5 HOH B 36 236 82 HOH HOH . N 5 HOH B 37 237 85 HOH HOH . N 5 HOH B 38 238 86 HOH HOH . N 5 HOH B 39 239 88 HOH HOH . N 5 HOH B 40 240 89 HOH HOH . N 5 HOH B 41 241 90 HOH HOH . N 5 HOH B 42 242 94 HOH HOH . N 5 HOH B 43 243 96 HOH HOH . N 5 HOH B 44 244 97 HOH HOH . N 5 HOH B 45 245 98 HOH HOH . N 5 HOH B 46 246 102 HOH HOH . N 5 HOH B 47 247 103 HOH HOH . N 5 HOH B 48 248 104 HOH HOH . N 5 HOH B 49 249 105 HOH HOH . N 5 HOH B 50 250 112 HOH HOH . N 5 HOH B 51 251 113 HOH HOH . N 5 HOH B 52 252 114 HOH HOH . N 5 HOH B 53 253 117 HOH HOH . N 5 HOH B 54 254 118 HOH HOH . N 5 HOH B 55 255 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 2.638 15.425 14.729 1 26.77 ? C1 EDO 104 A 1 HETATM 2 O O1 EDO . . . F 3 2.927 15.931 16.044 1 28.23 ? O1 EDO 104 A 1 HETATM 3 C C2 EDO . . . F 3 2.862 16.512 13.678 1 25.01 ? C2 EDO 104 A 1 HETATM 4 O O2 EDO . . . F 3 1.677 16.698 12.9 1 24.86 ? O2 EDO 104 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #