data_4EJD # _model_server_result.job_id W-1LmL6vHGTA6IBhvlSvlQ _model_server_result.datetime_utc '2024-10-11 04:26:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ejd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":103}' # _entry.id 4EJD # _exptl.entry_id 4EJD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EJD _cell.length_a 28.82 _cell.length_b 65.63 _cell.length_c 92.93 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C IVA 1 C IVA 1 1_555 C N VAL 2 C VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 sing covale ? covale2 C C VAL 3 C VAL 3 1_555 C N STA 4 C STA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 sing covale ? covale3 C C STA 4 C STA 4 1_555 C N ALA 5 C ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 sing covale ? covale4 C C ALA 5 C ALA 5 1_555 C N STA 6 C STA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.179 sing # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4EJD _atom_sites.fract_transf_matrix[1][1] 0.034698 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 BME A 1 101 4 BME BME . E 4 1F1 A 1 102 46 1F1 1F1 . F 5 GOL B 1 101 1 GOL GOL . G 3 BME B 1 102 2 BME BME . H 3 BME B 1 103 3 BME BME . I 6 HOH A 1 201 10 HOH HOH . I 6 HOH A 2 202 11 HOH HOH . I 6 HOH A 3 203 12 HOH HOH . I 6 HOH A 4 204 13 HOH HOH . I 6 HOH A 5 205 16 HOH HOH . I 6 HOH A 6 206 17 HOH HOH . I 6 HOH A 7 207 18 HOH HOH . I 6 HOH A 8 208 19 HOH HOH . I 6 HOH A 9 209 21 HOH HOH . I 6 HOH A 10 210 22 HOH HOH . I 6 HOH A 11 211 23 HOH HOH . I 6 HOH A 12 212 24 HOH HOH . I 6 HOH A 13 213 30 HOH HOH . I 6 HOH A 14 214 31 HOH HOH . I 6 HOH A 15 215 33 HOH HOH . I 6 HOH A 16 216 35 HOH HOH . I 6 HOH A 17 217 38 HOH HOH . I 6 HOH A 18 218 40 HOH HOH . I 6 HOH A 19 219 41 HOH HOH . I 6 HOH A 20 220 42 HOH HOH . I 6 HOH A 21 221 43 HOH HOH . I 6 HOH A 22 222 45 HOH HOH . I 6 HOH A 23 223 48 HOH HOH . I 6 HOH A 24 224 51 HOH HOH . I 6 HOH A 25 225 55 HOH HOH . I 6 HOH A 26 226 58 HOH HOH . I 6 HOH A 27 227 61 HOH HOH . I 6 HOH A 28 228 62 HOH HOH . I 6 HOH A 29 229 63 HOH HOH . I 6 HOH A 30 230 67 HOH HOH . I 6 HOH A 31 231 68 HOH HOH . I 6 HOH A 32 232 71 HOH HOH . I 6 HOH A 33 233 74 HOH HOH . I 6 HOH A 34 234 75 HOH HOH . I 6 HOH A 35 235 76 HOH HOH . I 6 HOH A 36 236 77 HOH HOH . I 6 HOH A 37 237 79 HOH HOH . I 6 HOH A 38 238 81 HOH HOH . I 6 HOH A 39 239 82 HOH HOH . I 6 HOH A 40 240 83 HOH HOH . I 6 HOH A 41 241 90 HOH HOH . I 6 HOH A 42 242 93 HOH HOH . I 6 HOH A 43 243 96 HOH HOH . I 6 HOH A 44 244 97 HOH HOH . I 6 HOH A 45 245 98 HOH HOH . I 6 HOH A 46 246 102 HOH HOH . I 6 HOH A 47 247 104 HOH HOH . I 6 HOH A 48 248 108 HOH HOH . I 6 HOH A 49 249 109 HOH HOH . I 6 HOH A 50 250 111 HOH HOH . I 6 HOH A 51 251 116 HOH HOH . I 6 HOH A 52 252 119 HOH HOH . I 6 HOH A 53 253 120 HOH HOH . I 6 HOH A 54 254 121 HOH HOH . I 6 HOH A 55 255 123 HOH HOH . I 6 HOH A 56 256 125 HOH HOH . I 6 HOH A 57 257 129 HOH HOH . I 6 HOH A 58 258 131 HOH HOH . I 6 HOH A 59 259 134 HOH HOH . I 6 HOH A 60 260 135 HOH HOH . I 6 HOH A 61 261 136 HOH HOH . I 6 HOH A 62 262 138 HOH HOH . I 6 HOH A 63 263 139 HOH HOH . I 6 HOH A 64 264 140 HOH HOH . I 6 HOH A 65 265 141 HOH HOH . I 6 HOH A 66 266 142 HOH HOH . I 6 HOH A 67 267 144 HOH HOH . I 6 HOH A 68 268 146 HOH HOH . I 6 HOH A 69 269 151 HOH HOH . I 6 HOH A 70 270 153 HOH HOH . I 6 HOH A 71 271 154 HOH HOH . I 6 HOH A 72 272 155 HOH HOH . I 6 HOH A 73 273 158 HOH HOH . I 6 HOH A 74 274 159 HOH HOH . I 6 HOH A 75 275 160 HOH HOH . I 6 HOH A 76 276 164 HOH HOH . I 6 HOH A 77 277 166 HOH HOH . I 6 HOH A 78 278 168 HOH HOH . I 6 HOH A 79 279 169 HOH HOH . J 6 HOH B 1 201 5 HOH HOH . J 6 HOH B 2 202 6 HOH HOH . J 6 HOH B 3 203 7 HOH HOH . J 6 HOH B 4 204 8 HOH HOH . J 6 HOH B 5 205 9 HOH HOH . J 6 HOH B 6 206 14 HOH HOH . J 6 HOH B 7 207 15 HOH HOH . J 6 HOH B 8 208 20 HOH HOH . J 6 HOH B 9 209 25 HOH HOH . J 6 HOH B 10 210 26 HOH HOH . J 6 HOH B 11 211 27 HOH HOH . J 6 HOH B 12 212 28 HOH HOH . J 6 HOH B 13 213 29 HOH HOH . J 6 HOH B 14 214 32 HOH HOH . J 6 HOH B 15 215 34 HOH HOH . J 6 HOH B 16 216 37 HOH HOH . J 6 HOH B 17 217 39 HOH HOH . J 6 HOH B 18 218 44 HOH HOH . J 6 HOH B 19 219 47 HOH HOH . J 6 HOH B 20 220 49 HOH HOH . J 6 HOH B 21 221 50 HOH HOH . J 6 HOH B 22 222 53 HOH HOH . J 6 HOH B 23 223 54 HOH HOH . J 6 HOH B 24 224 56 HOH HOH . J 6 HOH B 25 225 57 HOH HOH . J 6 HOH B 26 226 59 HOH HOH . J 6 HOH B 27 227 60 HOH HOH . J 6 HOH B 28 228 64 HOH HOH . J 6 HOH B 29 229 66 HOH HOH . J 6 HOH B 30 230 69 HOH HOH . J 6 HOH B 31 231 70 HOH HOH . J 6 HOH B 32 232 72 HOH HOH . J 6 HOH B 33 233 73 HOH HOH . J 6 HOH B 34 234 78 HOH HOH . J 6 HOH B 35 235 80 HOH HOH . J 6 HOH B 36 236 84 HOH HOH . J 6 HOH B 37 237 85 HOH HOH . J 6 HOH B 38 238 86 HOH HOH . J 6 HOH B 39 239 87 HOH HOH . J 6 HOH B 40 240 88 HOH HOH . J 6 HOH B 41 241 89 HOH HOH . J 6 HOH B 42 242 91 HOH HOH . J 6 HOH B 43 243 92 HOH HOH . J 6 HOH B 44 244 94 HOH HOH . J 6 HOH B 45 245 99 HOH HOH . J 6 HOH B 46 246 100 HOH HOH . J 6 HOH B 47 247 101 HOH HOH . J 6 HOH B 48 248 103 HOH HOH . J 6 HOH B 49 249 105 HOH HOH . J 6 HOH B 50 250 106 HOH HOH . J 6 HOH B 51 251 107 HOH HOH . J 6 HOH B 52 252 110 HOH HOH . J 6 HOH B 53 253 112 HOH HOH . J 6 HOH B 54 254 113 HOH HOH . J 6 HOH B 55 255 114 HOH HOH . J 6 HOH B 56 256 115 HOH HOH . J 6 HOH B 57 257 117 HOH HOH . J 6 HOH B 58 258 118 HOH HOH . J 6 HOH B 59 259 122 HOH HOH . J 6 HOH B 60 260 124 HOH HOH . J 6 HOH B 61 261 126 HOH HOH . J 6 HOH B 62 262 127 HOH HOH . J 6 HOH B 63 263 128 HOH HOH . J 6 HOH B 64 264 130 HOH HOH . J 6 HOH B 65 265 132 HOH HOH . J 6 HOH B 66 266 133 HOH HOH . J 6 HOH B 67 267 137 HOH HOH . J 6 HOH B 68 268 143 HOH HOH . J 6 HOH B 69 269 145 HOH HOH . J 6 HOH B 70 270 147 HOH HOH . J 6 HOH B 71 271 148 HOH HOH . J 6 HOH B 72 272 149 HOH HOH . J 6 HOH B 73 273 150 HOH HOH . J 6 HOH B 74 274 156 HOH HOH . J 6 HOH B 75 275 157 HOH HOH . J 6 HOH B 76 276 161 HOH HOH . J 6 HOH B 77 277 162 HOH HOH . J 6 HOH B 78 278 163 HOH HOH . J 6 HOH B 79 279 165 HOH HOH . J 6 HOH B 80 280 167 HOH HOH . J 6 HOH B 81 281 170 HOH HOH . K 6 HOH C 1 101 65 HOH HOH . K 6 HOH C 2 102 95 HOH HOH . K 6 HOH C 3 103 36 HOH HOH . K 6 HOH C 4 104 52 HOH HOH . K 6 HOH C 5 105 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . H 3 26.867 -7.654 4.679 0.5 23.96 ? C1 BME 103 B 1 HETATM 2 C C2 BME . . . H 3 26.679 -6.748 3.472 0.5 9.74 ? C2 BME 103 B 1 HETATM 3 O O1 BME . . . H 3 28.037 -7.267 5.408 0.5 32.73 ? O1 BME 103 B 1 HETATM 4 S S2 BME . . . H 3 25.47 -7.462 2.379 0.5 22.47 ? S2 BME 103 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #