data_4EJG # _model_server_result.job_id DCOq8MoxP1CCFfeaRERx6w _model_server_result.datetime_utc '2024-11-27 19:59:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ejg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":500}' # _entry.id 4EJG # _exptl.entry_id 4EJG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 100.62 _cell.angle_beta 101.82 _cell.angle_gamma 93.73 _cell.entry_id 4EJG _cell.length_a 71.657 _cell.length_b 120.324 _cell.length_c 153.731 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EJG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 PISA monomeric 1 author_and_software_defined_assembly 7 PISA monomeric 1 author_and_software_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,I,J,V 1 1 B,K,L,W 2 1 C,M,N,X 3 1 D,O,P,Y 4 1 E,Q,Z 5 1 F,R,AA 6 1 G,S,BA 7 1 H,T,U,CA 8 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 417 A CYS 439 1_555 I FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc2 B SG CYS 417 B CYS 439 1_555 K FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc3 C SG CYS 417 C CYS 439 1_555 M FE HEM . C HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc4 D SG CYS 417 D CYS 439 1_555 O FE HEM . D HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc5 E SG CYS 417 E CYS 439 1_555 Q FE HEM . E HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc6 F SG CYS 417 F CYS 439 1_555 R FE HEM . F HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc7 G SG CYS 417 G CYS 439 1_555 S FE HEM . G HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc8 H SG CYS 417 H CYS 439 1_555 T FE HEM . H HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 142 n n CHA C4D HEM doub 143 n n CHA HHA HEM sing 144 n n CHB C4A HEM sing 145 n n CHB C1B HEM doub 146 n n CHB HHB HEM sing 147 n n CHC C4B HEM sing 148 n n CHC C1C HEM doub 149 n n CHC HHC HEM sing 150 n n CHD C4C HEM doub 151 n n CHD C1D HEM sing 152 n n CHD HHD HEM sing 153 n n C1A C2A HEM doub 154 n y C1A NA HEM sing 155 n y C2A C3A HEM sing 156 n y C2A CAA HEM sing 157 n n C3A C4A HEM doub 158 n y C3A CMA HEM sing 159 n n C4A NA HEM sing 160 n y CMA HMA HEM sing 161 n n CMA HMAA HEM sing 162 n n CMA HMAB HEM sing 163 n n CAA CBA HEM sing 164 n n CAA HAA HEM sing 165 n n CAA HAAA HEM sing 166 n n CBA CGA HEM sing 167 n n CBA HBA HEM sing 168 n n CBA HBAA HEM sing 169 n n CGA O1A HEM doub 170 n n CGA O2A HEM sing 171 n n C1B C2B HEM sing 172 n n C1B NB HEM sing 173 n n C2B C3B HEM doub 174 n n C2B CMB HEM sing 175 n n C3B C4B HEM sing 176 n n C3B CAB HEM sing 177 n n C4B NB HEM doub 178 n n CMB HMB HEM sing 179 n n CMB HMBA HEM sing 180 n n CMB HMBB HEM sing 181 n n CAB CBB HEM doub 182 n n CAB HAB HEM sing 183 n n CBB HBB HEM sing 184 n n CBB HBBA HEM sing 185 n n C1C C2C HEM sing 186 n y C1C NC HEM sing 187 n y C2C C3C HEM doub 188 n y C2C CMC HEM sing 189 n n C3C C4C HEM sing 190 n y C3C CAC HEM sing 191 n n C4C NC HEM sing 192 n y CMC HMC HEM sing 193 n n CMC HMCA HEM sing 194 n n CMC HMCB HEM sing 195 n n CAC CBC HEM doub 196 n n CAC HAC HEM sing 197 n n CBC HBC HEM sing 198 n n CBC HBCA HEM sing 199 n n C1D C2D HEM sing 200 n n C1D ND HEM doub 201 n n C2D C3D HEM doub 202 n n C2D CMD HEM sing 203 n n C3D C4D HEM sing 204 n n C3D CAD HEM sing 205 n n C4D ND HEM sing 206 n n CMD HMD HEM sing 207 n n CMD HMDA HEM sing 208 n n CMD HMDB HEM sing 209 n n CAD CBD HEM sing 210 n n CAD HAD HEM sing 211 n n CAD HADA HEM sing 212 n n CBD CGD HEM sing 213 n n CBD HBD HEM sing 214 n n CBD HBDA HEM sing 215 n n CGD O1D HEM doub 216 n n CGD O2D HEM sing 217 n n O2A H2A HEM sing 218 n n O2D H2D HEM sing 219 n n FE NA HEM sing 220 n n FE NB HEM sing 221 n n FE NC HEM sing 222 n n FE ND HEM sing 223 n n # _atom_sites.entry_id 4EJG _atom_sites.fract_transf_matrix[1][1] 0.013955 _atom_sites.fract_transf_matrix[1][2] 0.00091 _atom_sites.fract_transf_matrix[1][3] 0.00317 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008329 _atom_sites.fract_transf_matrix[2][3] 0.001721 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 HEM A 1 500 500 HEM HEM . J 3 NCT A 1 501 501 NCT NCT . K 2 HEM B 1 500 500 HEM HEM . L 3 NCT B 1 501 501 NCT NCT . M 2 HEM C 1 500 500 HEM HEM . N 3 NCT C 1 501 501 NCT NCT . O 2 HEM D 1 500 500 HEM HEM . P 3 NCT D 1 501 501 NCT NCT . Q 2 HEM E 1 500 500 HEM HEM . R 2 HEM F 1 500 500 HEM HEM . S 2 HEM G 1 500 500 HEM HEM . T 2 HEM H 1 501 500 HEM HEM . U 4 GOL H 1 502 1 GOL GOL . V 5 HOH A 1 601 2 HOH HOH . V 5 HOH A 2 602 3 HOH HOH . V 5 HOH A 3 603 14 HOH HOH . V 5 HOH A 4 604 15 HOH HOH . V 5 HOH A 5 605 16 HOH HOH . V 5 HOH A 6 606 18 HOH HOH . V 5 HOH A 7 607 30 HOH HOH . V 5 HOH A 8 608 36 HOH HOH . V 5 HOH A 9 609 48 HOH HOH . W 5 HOH B 1 601 12 HOH HOH . W 5 HOH B 2 602 13 HOH HOH . W 5 HOH B 3 603 28 HOH HOH . W 5 HOH B 4 604 29 HOH HOH . W 5 HOH B 5 605 49 HOH HOH . X 5 HOH C 1 601 23 HOH HOH . X 5 HOH C 2 602 27 HOH HOH . X 5 HOH C 3 603 34 HOH HOH . X 5 HOH C 4 604 38 HOH HOH . X 5 HOH C 5 605 41 HOH HOH . X 5 HOH C 6 606 51 HOH HOH . Y 5 HOH D 1 601 4 HOH HOH . Y 5 HOH D 2 602 6 HOH HOH . Y 5 HOH D 3 603 8 HOH HOH . Y 5 HOH D 4 604 17 HOH HOH . Y 5 HOH D 5 605 19 HOH HOH . Y 5 HOH D 6 606 21 HOH HOH . Y 5 HOH D 7 607 25 HOH HOH . Y 5 HOH D 8 608 26 HOH HOH . Y 5 HOH D 9 609 32 HOH HOH . Y 5 HOH D 10 610 35 HOH HOH . Y 5 HOH D 11 611 40 HOH HOH . Y 5 HOH D 12 612 43 HOH HOH . Y 5 HOH D 13 613 45 HOH HOH . Y 5 HOH D 14 614 52 HOH HOH . Z 5 HOH E 1 601 7 HOH HOH . Z 5 HOH E 2 602 42 HOH HOH . AA 5 HOH F 1 601 10 HOH HOH . AA 5 HOH F 2 602 50 HOH HOH . BA 5 HOH G 1 601 1 HOH HOH . BA 5 HOH G 2 602 9 HOH HOH . BA 5 HOH G 3 603 20 HOH HOH . BA 5 HOH G 4 604 22 HOH HOH . BA 5 HOH G 5 605 31 HOH HOH . BA 5 HOH G 6 606 33 HOH HOH . BA 5 HOH G 7 607 37 HOH HOH . BA 5 HOH G 8 608 39 HOH HOH . BA 5 HOH G 9 609 47 HOH HOH . CA 5 HOH H 1 601 24 HOH HOH . CA 5 HOH H 2 602 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . I 2 16.504 -11.674 35.723 1 24.57 ? CHA HEM 500 A 1 HETATM 2 C CHB HEM . . . I 2 15.608 -13.41 40.076 1 21.63 ? CHB HEM 500 A 1 HETATM 3 C CHC HEM . . . I 2 17.222 -17.696 38.732 1 25.61 ? CHC HEM 500 A 1 HETATM 4 C CHD HEM . . . I 2 18.595 -15.834 34.457 1 22.01 ? CHD HEM 500 A 1 HETATM 5 C C1A HEM . . . I 2 16.152 -11.763 37.033 1 21.32 ? C1A HEM 500 A 1 HETATM 6 C C2A HEM . . . I 2 15.647 -10.681 37.826 1 21.78 ? C2A HEM 500 A 1 HETATM 7 C C3A HEM . . . I 2 15.405 -11.14 39.048 1 21.86 ? C3A HEM 500 A 1 HETATM 8 C C4A HEM . . . I 2 15.694 -12.555 39.02 1 23 ? C4A HEM 500 A 1 HETATM 9 C CMA HEM . . . I 2 14.841 -10.278 40.236 1 16.62 ? CMA HEM 500 A 1 HETATM 10 C CAA HEM . . . I 2 15.463 -9.189 37.364 1 20.6 ? CAA HEM 500 A 1 HETATM 11 C CBA HEM . . . I 2 14.156 -9.015 36.651 1 23.7 ? CBA HEM 500 A 1 HETATM 12 C CGA HEM . . . I 2 13.872 -7.57 36.364 1 24.57 ? CGA HEM 500 A 1 HETATM 13 O O1A HEM . . . I 2 12.719 -7.087 36.575 1 28.18 ? O1A HEM 500 A 1 HETATM 14 O O2A HEM . . . I 2 14.786 -6.87 35.914 1 25.56 ? O2A HEM 500 A 1 HETATM 15 C C1B HEM . . . I 2 16.022 -14.691 40.151 1 21.85 ? C1B HEM 500 A 1 HETATM 16 C C2B HEM . . . I 2 15.96 -15.565 41.318 1 26.48 ? C2B HEM 500 A 1 HETATM 17 C C3B HEM . . . I 2 16.415 -16.788 40.941 1 24.84 ? C3B HEM 500 A 1 HETATM 18 C C4B HEM . . . I 2 16.749 -16.697 39.549 1 23.03 ? C4B HEM 500 A 1 HETATM 19 C CMB HEM . . . I 2 15.441 -15.104 42.722 1 17.09 ? CMB HEM 500 A 1 HETATM 20 C CAB HEM . . . I 2 16.536 -18.111 41.756 1 25.28 ? CAB HEM 500 A 1 HETATM 21 C CBB HEM . . . I 2 16.898 -18.239 43.034 1 24.74 ? CBB HEM 500 A 1 HETATM 22 C C1C HEM . . . I 2 17.705 -17.59 37.441 1 25.42 ? C1C HEM 500 A 1 HETATM 23 C C2C HEM . . . I 2 18.168 -18.669 36.594 1 26.13 ? C2C HEM 500 A 1 HETATM 24 C C3C HEM . . . I 2 18.54 -18.163 35.425 1 25.47 ? C3C HEM 500 A 1 HETATM 25 C C4C HEM . . . I 2 18.328 -16.737 35.471 1 24.57 ? C4C HEM 500 A 1 HETATM 26 C CMC HEM . . . I 2 18.255 -20.167 36.95 1 23.86 ? CMC HEM 500 A 1 HETATM 27 C CAC HEM . . . I 2 19.163 -19.026 34.293 1 27.62 ? CAC HEM 500 A 1 HETATM 28 C CBC HEM . . . I 2 18.647 -19.192 33.081 1 31.25 ? CBC HEM 500 A 1 HETATM 29 C C1D HEM . . . I 2 18.205 -14.536 34.358 1 19.95 ? C1D HEM 500 A 1 HETATM 30 C C2D HEM . . . I 2 18.406 -13.623 33.268 1 23.24 ? C2D HEM 500 A 1 HETATM 31 C C3D HEM . . . I 2 17.727 -12.337 33.689 1 23.51 ? C3D HEM 500 A 1 HETATM 32 C C4D HEM . . . I 2 17.19 -12.58 34.987 1 24.41 ? C4D HEM 500 A 1 HETATM 33 C CMD HEM . . . I 2 19.13 -13.781 31.929 1 17.23 ? CMD HEM 500 A 1 HETATM 34 C CAD HEM . . . I 2 17.661 -11.08 32.86 1 21.74 ? CAD HEM 500 A 1 HETATM 35 C CBD HEM . . . I 2 16.287 -11.009 32.194 1 20.54 ? CBD HEM 500 A 1 HETATM 36 C CGD HEM . . . I 2 16.181 -9.659 31.465 1 21.94 ? CGD HEM 500 A 1 HETATM 37 O O1D HEM . . . I 2 15.243 -9.407 30.691 1 26.81 ? O1D HEM 500 A 1 HETATM 38 O O2D HEM . . . I 2 17.004 -8.75 31.65 1 22.53 ? O2D HEM 500 A 1 HETATM 39 N NA HEM . . . I 2 16.159 -12.901 37.771 1 25.58 ? NA HEM 500 A 1 HETATM 40 N NB HEM . . . I 2 16.478 -15.419 39.106 1 26.96 ? NB HEM 500 A 1 HETATM 41 N NC HEM . . . I 2 17.785 -16.423 36.714 1 25.9 ? NC HEM 500 A 1 HETATM 42 N ND HEM . . . I 2 17.484 -13.88 35.338 1 27.12 ? ND HEM 500 A 1 HETATM 43 FE FE HEM . . . I 2 16.892 -14.71 37.212 1 24.05 ? FE HEM 500 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #