data_4EJG
#
_model_server_result.job_id            7dzQVNLBCON9-Tj4XOmFTA 
_model_server_result.datetime_utc      '2024-11-24 02:28:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ejg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":500}' 
#
_entry.id    4EJG 
#
_exptl.entry_id    4EJG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         100.62 
_cell.angle_beta          101.82 
_cell.angle_gamma         93.73 
_cell.entry_id            4EJG 
_cell.length_a            71.657 
_cell.length_b            120.324 
_cell.length_c            153.731 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4EJG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
PISA monomeric 1 author_and_software_defined_assembly 7 
PISA monomeric 1 author_and_software_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I,J,V 1 1 
B,K,L,W 2 1 
C,M,N,X 3 1 
D,O,P,Y 4 1 
E,Q,Z 5 1 
F,R,AA 6 1 
G,S,BA 7 1 
H,T,U,CA 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 417 A CYS 439 1_555 I FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc2 B SG CYS 417 B CYS 439 1_555 K FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc3 C SG CYS 417 C CYS 439 1_555 M FE HEM . C HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc4 D SG CYS 417 D CYS 439 1_555 O FE HEM . D HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc5 E SG CYS 417 E CYS 439 1_555 Q FE HEM . E HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc6 F SG CYS 417 F CYS 439 1_555 R FE HEM . F HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc7 G SG CYS 417 G CYS 439 1_555 S FE HEM . G HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc8 H SG CYS 417 H CYS 439 1_555 T FE HEM . H HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 142 n n 
CHA C4D HEM doub 143 n n 
CHA HHA HEM sing 144 n n 
CHB C4A HEM sing 145 n n 
CHB C1B HEM doub 146 n n 
CHB HHB HEM sing 147 n n 
CHC C4B HEM sing 148 n n 
CHC C1C HEM doub 149 n n 
CHC HHC HEM sing 150 n n 
CHD C4C HEM doub 151 n n 
CHD C1D HEM sing 152 n n 
CHD HHD HEM sing 153 n n 
C1A C2A HEM doub 154 n y 
C1A NA HEM sing 155 n y 
C2A C3A HEM sing 156 n y 
C2A CAA HEM sing 157 n n 
C3A C4A HEM doub 158 n y 
C3A CMA HEM sing 159 n n 
C4A NA HEM sing 160 n y 
CMA HMA HEM sing 161 n n 
CMA HMAA HEM sing 162 n n 
CMA HMAB HEM sing 163 n n 
CAA CBA HEM sing 164 n n 
CAA HAA HEM sing 165 n n 
CAA HAAA HEM sing 166 n n 
CBA CGA HEM sing 167 n n 
CBA HBA HEM sing 168 n n 
CBA HBAA HEM sing 169 n n 
CGA O1A HEM doub 170 n n 
CGA O2A HEM sing 171 n n 
C1B C2B HEM sing 172 n n 
C1B NB HEM sing 173 n n 
C2B C3B HEM doub 174 n n 
C2B CMB HEM sing 175 n n 
C3B C4B HEM sing 176 n n 
C3B CAB HEM sing 177 n n 
C4B NB HEM doub 178 n n 
CMB HMB HEM sing 179 n n 
CMB HMBA HEM sing 180 n n 
CMB HMBB HEM sing 181 n n 
CAB CBB HEM doub 182 n n 
CAB HAB HEM sing 183 n n 
CBB HBB HEM sing 184 n n 
CBB HBBA HEM sing 185 n n 
C1C C2C HEM sing 186 n y 
C1C NC HEM sing 187 n y 
C2C C3C HEM doub 188 n y 
C2C CMC HEM sing 189 n n 
C3C C4C HEM sing 190 n y 
C3C CAC HEM sing 191 n n 
C4C NC HEM sing 192 n y 
CMC HMC HEM sing 193 n n 
CMC HMCA HEM sing 194 n n 
CMC HMCB HEM sing 195 n n 
CAC CBC HEM doub 196 n n 
CAC HAC HEM sing 197 n n 
CBC HBC HEM sing 198 n n 
CBC HBCA HEM sing 199 n n 
C1D C2D HEM sing 200 n n 
C1D ND HEM doub 201 n n 
C2D C3D HEM doub 202 n n 
C2D CMD HEM sing 203 n n 
C3D C4D HEM sing 204 n n 
C3D CAD HEM sing 205 n n 
C4D ND HEM sing 206 n n 
CMD HMD HEM sing 207 n n 
CMD HMDA HEM sing 208 n n 
CMD HMDB HEM sing 209 n n 
CAD CBD HEM sing 210 n n 
CAD HAD HEM sing 211 n n 
CAD HADA HEM sing 212 n n 
CBD CGD HEM sing 213 n n 
CBD HBD HEM sing 214 n n 
CBD HBDA HEM sing 215 n n 
CGD O1D HEM doub 216 n n 
CGD O2D HEM sing 217 n n 
O2A H2A HEM sing 218 n n 
O2D H2D HEM sing 219 n n 
FE NA HEM sing 220 n n 
FE NB HEM sing 221 n n 
FE NC HEM sing 222 n n 
FE ND HEM sing 223 n n 
#
_atom_sites.entry_id                     4EJG 
_atom_sites.fract_transf_matrix[1][1]    0.013955 
_atom_sites.fract_transf_matrix[1][2]    0.00091 
_atom_sites.fract_transf_matrix[1][3]    0.00317 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008329 
_atom_sites.fract_transf_matrix[2][3]    0.001721 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006786 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 HEM A 1 500 500 HEM HEM . 
J 3 NCT A 1 501 501 NCT NCT . 
K 2 HEM B 1 500 500 HEM HEM . 
L 3 NCT B 1 501 501 NCT NCT . 
M 2 HEM C 1 500 500 HEM HEM . 
N 3 NCT C 1 501 501 NCT NCT . 
O 2 HEM D 1 500 500 HEM HEM . 
P 3 NCT D 1 501 501 NCT NCT . 
Q 2 HEM E 1 500 500 HEM HEM . 
R 2 HEM F 1 500 500 HEM HEM . 
S 2 HEM G 1 500 500 HEM HEM . 
T 2 HEM H 1 501 500 HEM HEM . 
U 4 GOL H 1 502 1 GOL GOL . 
V 5 HOH A 1 601 2 HOH HOH . 
V 5 HOH A 2 602 3 HOH HOH . 
V 5 HOH A 3 603 14 HOH HOH . 
V 5 HOH A 4 604 15 HOH HOH . 
V 5 HOH A 5 605 16 HOH HOH . 
V 5 HOH A 6 606 18 HOH HOH . 
V 5 HOH A 7 607 30 HOH HOH . 
V 5 HOH A 8 608 36 HOH HOH . 
V 5 HOH A 9 609 48 HOH HOH . 
W 5 HOH B 1 601 12 HOH HOH . 
W 5 HOH B 2 602 13 HOH HOH . 
W 5 HOH B 3 603 28 HOH HOH . 
W 5 HOH B 4 604 29 HOH HOH . 
W 5 HOH B 5 605 49 HOH HOH . 
X 5 HOH C 1 601 23 HOH HOH . 
X 5 HOH C 2 602 27 HOH HOH . 
X 5 HOH C 3 603 34 HOH HOH . 
X 5 HOH C 4 604 38 HOH HOH . 
X 5 HOH C 5 605 41 HOH HOH . 
X 5 HOH C 6 606 51 HOH HOH . 
Y 5 HOH D 1 601 4 HOH HOH . 
Y 5 HOH D 2 602 6 HOH HOH . 
Y 5 HOH D 3 603 8 HOH HOH . 
Y 5 HOH D 4 604 17 HOH HOH . 
Y 5 HOH D 5 605 19 HOH HOH . 
Y 5 HOH D 6 606 21 HOH HOH . 
Y 5 HOH D 7 607 25 HOH HOH . 
Y 5 HOH D 8 608 26 HOH HOH . 
Y 5 HOH D 9 609 32 HOH HOH . 
Y 5 HOH D 10 610 35 HOH HOH . 
Y 5 HOH D 11 611 40 HOH HOH . 
Y 5 HOH D 12 612 43 HOH HOH . 
Y 5 HOH D 13 613 45 HOH HOH . 
Y 5 HOH D 14 614 52 HOH HOH . 
Z 5 HOH E 1 601 7 HOH HOH . 
Z 5 HOH E 2 602 42 HOH HOH . 
AA 5 HOH F 1 601 10 HOH HOH . 
AA 5 HOH F 2 602 50 HOH HOH . 
BA 5 HOH G 1 601 1 HOH HOH . 
BA 5 HOH G 2 602 9 HOH HOH . 
BA 5 HOH G 3 603 20 HOH HOH . 
BA 5 HOH G 4 604 22 HOH HOH . 
BA 5 HOH G 5 605 31 HOH HOH . 
BA 5 HOH G 6 606 33 HOH HOH . 
BA 5 HOH G 7 607 37 HOH HOH . 
BA 5 HOH G 8 608 39 HOH HOH . 
BA 5 HOH G 9 609 47 HOH HOH . 
CA 5 HOH H 1 601 24 HOH HOH . 
CA 5 HOH H 2 602 44 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . O 2 30.505 -75.365 -71.505 1 27.6 ? CHA HEM 500 D 1 
HETATM 2 C CHB HEM . . . O 2 31.381 -80.049 -71.547 1 27.45 ? CHB HEM 500 D 1 
HETATM 3 C CHC HEM . . . O 2 29.59 -80.611 -67.105 1 26.65 ? CHC HEM 500 D 1 
HETATM 4 C CHD HEM . . . O 2 28.272 -76 -67.233 1 22.71 ? CHD HEM 500 D 1 
HETATM 5 C C1A HEM . . . O 2 30.91 -76.604 -71.928 1 28.29 ? C1A HEM 500 D 1 
HETATM 6 C C2A HEM . . . O 2 31.514 -76.916 -73.202 1 27.38 ? C2A HEM 500 D 1 
HETATM 7 C C3A HEM . . . O 2 31.759 -78.205 -73.225 1 28.34 ? C3A HEM 500 D 1 
HETATM 8 C C4A HEM . . . O 2 31.338 -78.741 -71.94 1 27.67 ? C4A HEM 500 D 1 
HETATM 9 C CMA HEM . . . O 2 32.384 -79.009 -74.392 1 25.57 ? CMA HEM 500 D 1 
HETATM 10 C CAA HEM . . . O 2 31.773 -75.902 -74.321 1 25.62 ? CAA HEM 500 D 1 
HETATM 11 C CBA HEM . . . O 2 32.986 -75.092 -73.947 1 26.11 ? CBA HEM 500 D 1 
HETATM 12 C CGA HEM . . . O 2 33.337 -74.237 -75.149 1 27.2 ? CGA HEM 500 D 1 
HETATM 13 O O1A HEM . . . O 2 34.462 -74.391 -75.703 1 27 ? O1A HEM 500 D 1 
HETATM 14 O O2A HEM . . . O 2 32.505 -73.385 -75.534 1 25.78 ? O2A HEM 500 D 1 
HETATM 15 C C1B HEM . . . O 2 30.97 -80.609 -70.359 1 25.23 ? C1B HEM 500 D 1 
HETATM 16 C C2B HEM . . . O 2 31.124 -82.006 -70.003 1 24.45 ? C2B HEM 500 D 1 
HETATM 17 C C3B HEM . . . O 2 30.633 -82.152 -68.76 1 24.42 ? C3B HEM 500 D 1 
HETATM 18 C C4B HEM . . . O 2 30.168 -80.865 -68.323 1 26.58 ? C4B HEM 500 D 1 
HETATM 19 C CMB HEM . . . O 2 31.769 -83.105 -70.927 1 24.41 ? CMB HEM 500 D 1 
HETATM 20 C CAB HEM . . . O 2 30.514 -83.422 -67.862 1 22.02 ? CAB HEM 500 D 1 
HETATM 21 C CBB HEM . . . O 2 30.745 -84.673 -68.227 1 16.66 ? CBB HEM 500 D 1 
HETATM 22 C C1C HEM . . . O 2 29.083 -79.396 -66.726 1 24.83 ? C1C HEM 500 D 1 
HETATM 23 C C2C HEM . . . O 2 28.567 -79.044 -65.456 1 27.25 ? C2C HEM 500 D 1 
HETATM 24 C C3C HEM . . . O 2 28.209 -77.758 -65.502 1 26.62 ? C3C HEM 500 D 1 
HETATM 25 C C4C HEM . . . O 2 28.509 -77.256 -66.785 1 22.54 ? C4C HEM 500 D 1 
HETATM 26 C CMC HEM . . . O 2 28.451 -80 -64.227 1 25.54 ? CMC HEM 500 D 1 
HETATM 27 C CAC HEM . . . O 2 27.59 -76.937 -64.333 1 27.22 ? CAC HEM 500 D 1 
HETATM 28 C CBC HEM . . . O 2 28.469 -76.413 -63.463 1 28 ? CBC HEM 500 D 1 
HETATM 29 C C1D HEM . . . O 2 28.71 -75.433 -68.407 1 25.15 ? C1D HEM 500 D 1 
HETATM 30 C C2D HEM . . . O 2 28.423 -74.075 -68.803 1 22.92 ? C2D HEM 500 D 1 
HETATM 31 C C3D HEM . . . O 2 29.108 -73.862 -70.12 1 22.64 ? C3D HEM 500 D 1 
HETATM 32 C C4D HEM . . . O 2 29.778 -75.111 -70.383 1 26.07 ? C4D HEM 500 D 1 
HETATM 33 C CMD HEM . . . O 2 27.57 -73.029 -68.089 1 20.96 ? CMD HEM 500 D 1 
HETATM 34 C CAD HEM . . . O 2 29.092 -72.57 -70.939 1 22.71 ? CAD HEM 500 D 1 
HETATM 35 C CBD HEM . . . O 2 30.481 -71.937 -70.923 1 25.53 ? CBD HEM 500 D 1 
HETATM 36 C CGD HEM . . . O 2 30.562 -70.529 -71.467 1 25.31 ? CGD HEM 500 D 1 
HETATM 37 O O1D HEM . . . O 2 31.469 -69.764 -71.027 1 26.93 ? O1D HEM 500 D 1 
HETATM 38 O O2D HEM . . . O 2 29.718 -70.147 -72.306 1 26.91 ? O2D HEM 500 D 1 
HETATM 39 N NA HEM . . . O 2 30.835 -77.734 -71.176 1 28.86 ? NA HEM 500 D 1 
HETATM 40 N NB HEM . . . O 2 30.386 -79.925 -69.323 1 26.74 ? NB HEM 500 D 1 
HETATM 41 N NC HEM . . . O 2 29.043 -78.28 -67.495 1 27.35 ? NC HEM 500 D 1 
HETATM 42 N ND HEM . . . O 2 29.519 -76.035 -69.383 1 26.81 ? ND HEM 500 D 1 
HETATM 43 FE FE HEM . . . O 2 29.989 -78.005 -69.339 1 26.78 ? FE HEM 500 D 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           43 
#