data_4EJG # _model_server_result.job_id judjdAxpFmcROImTqreUkw _model_server_result.datetime_utc '2024-11-24 02:29:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ejg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":501}' # _entry.id 4EJG # _exptl.entry_id 4EJG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 100.62 _cell.angle_beta 101.82 _cell.angle_gamma 93.73 _cell.entry_id 4EJG _cell.length_a 71.657 _cell.length_b 120.324 _cell.length_c 153.731 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EJG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 PISA monomeric 1 author_and_software_defined_assembly 7 PISA monomeric 1 author_and_software_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,I,J,V 1 1 B,K,L,W 2 1 C,M,N,X 3 1 D,O,P,Y 4 1 E,Q,Z 5 1 F,R,AA 6 1 G,S,BA 7 1 H,T,U,CA 8 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 417 A CYS 439 1_555 I FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc2 B SG CYS 417 B CYS 439 1_555 K FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc3 C SG CYS 417 C CYS 439 1_555 M FE HEM . C HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc4 D SG CYS 417 D CYS 439 1_555 O FE HEM . D HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc5 E SG CYS 417 E CYS 439 1_555 Q FE HEM . E HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc6 F SG CYS 417 F CYS 439 1_555 R FE HEM . F HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc7 G SG CYS 417 G CYS 439 1_555 S FE HEM . G HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc8 H SG CYS 417 H CYS 439 1_555 T FE HEM . H HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 142 n n CHA C4D HEM doub 143 n n CHA HHA HEM sing 144 n n CHB C4A HEM sing 145 n n CHB C1B HEM doub 146 n n CHB HHB HEM sing 147 n n CHC C4B HEM sing 148 n n CHC C1C HEM doub 149 n n CHC HHC HEM sing 150 n n CHD C4C HEM doub 151 n n CHD C1D HEM sing 152 n n CHD HHD HEM sing 153 n n C1A C2A HEM doub 154 n y C1A NA HEM sing 155 n y C2A C3A HEM sing 156 n y C2A CAA HEM sing 157 n n C3A C4A HEM doub 158 n y C3A CMA HEM sing 159 n n C4A NA HEM sing 160 n y CMA HMA HEM sing 161 n n CMA HMAA HEM sing 162 n n CMA HMAB HEM sing 163 n n CAA CBA HEM sing 164 n n CAA HAA HEM sing 165 n n CAA HAAA HEM sing 166 n n CBA CGA HEM sing 167 n n CBA HBA HEM sing 168 n n CBA HBAA HEM sing 169 n n CGA O1A HEM doub 170 n n CGA O2A HEM sing 171 n n C1B C2B HEM sing 172 n n C1B NB HEM sing 173 n n C2B C3B HEM doub 174 n n C2B CMB HEM sing 175 n n C3B C4B HEM sing 176 n n C3B CAB HEM sing 177 n n C4B NB HEM doub 178 n n CMB HMB HEM sing 179 n n CMB HMBA HEM sing 180 n n CMB HMBB HEM sing 181 n n CAB CBB HEM doub 182 n n CAB HAB HEM sing 183 n n CBB HBB HEM sing 184 n n CBB HBBA HEM sing 185 n n C1C C2C HEM sing 186 n y C1C NC HEM sing 187 n y C2C C3C HEM doub 188 n y C2C CMC HEM sing 189 n n C3C C4C HEM sing 190 n y C3C CAC HEM sing 191 n n C4C NC HEM sing 192 n y CMC HMC HEM sing 193 n n CMC HMCA HEM sing 194 n n CMC HMCB HEM sing 195 n n CAC CBC HEM doub 196 n n CAC HAC HEM sing 197 n n CBC HBC HEM sing 198 n n CBC HBCA HEM sing 199 n n C1D C2D HEM sing 200 n n C1D ND HEM doub 201 n n C2D C3D HEM doub 202 n n C2D CMD HEM sing 203 n n C3D C4D HEM sing 204 n n C3D CAD HEM sing 205 n n C4D ND HEM sing 206 n n CMD HMD HEM sing 207 n n CMD HMDA HEM sing 208 n n CMD HMDB HEM sing 209 n n CAD CBD HEM sing 210 n n CAD HAD HEM sing 211 n n CAD HADA HEM sing 212 n n CBD CGD HEM sing 213 n n CBD HBD HEM sing 214 n n CBD HBDA HEM sing 215 n n CGD O1D HEM doub 216 n n CGD O2D HEM sing 217 n n O2A H2A HEM sing 218 n n O2D H2D HEM sing 219 n n FE NA HEM sing 220 n n FE NB HEM sing 221 n n FE NC HEM sing 222 n n FE ND HEM sing 223 n n # _atom_sites.entry_id 4EJG _atom_sites.fract_transf_matrix[1][1] 0.013955 _atom_sites.fract_transf_matrix[1][2] 0.00091 _atom_sites.fract_transf_matrix[1][3] 0.00317 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008329 _atom_sites.fract_transf_matrix[2][3] 0.001721 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 HEM A 1 500 500 HEM HEM . J 3 NCT A 1 501 501 NCT NCT . K 2 HEM B 1 500 500 HEM HEM . L 3 NCT B 1 501 501 NCT NCT . M 2 HEM C 1 500 500 HEM HEM . N 3 NCT C 1 501 501 NCT NCT . O 2 HEM D 1 500 500 HEM HEM . P 3 NCT D 1 501 501 NCT NCT . Q 2 HEM E 1 500 500 HEM HEM . R 2 HEM F 1 500 500 HEM HEM . S 2 HEM G 1 500 500 HEM HEM . T 2 HEM H 1 501 500 HEM HEM . U 4 GOL H 1 502 1 GOL GOL . V 5 HOH A 1 601 2 HOH HOH . V 5 HOH A 2 602 3 HOH HOH . V 5 HOH A 3 603 14 HOH HOH . V 5 HOH A 4 604 15 HOH HOH . V 5 HOH A 5 605 16 HOH HOH . V 5 HOH A 6 606 18 HOH HOH . V 5 HOH A 7 607 30 HOH HOH . V 5 HOH A 8 608 36 HOH HOH . V 5 HOH A 9 609 48 HOH HOH . W 5 HOH B 1 601 12 HOH HOH . W 5 HOH B 2 602 13 HOH HOH . W 5 HOH B 3 603 28 HOH HOH . W 5 HOH B 4 604 29 HOH HOH . W 5 HOH B 5 605 49 HOH HOH . X 5 HOH C 1 601 23 HOH HOH . X 5 HOH C 2 602 27 HOH HOH . X 5 HOH C 3 603 34 HOH HOH . X 5 HOH C 4 604 38 HOH HOH . X 5 HOH C 5 605 41 HOH HOH . X 5 HOH C 6 606 51 HOH HOH . Y 5 HOH D 1 601 4 HOH HOH . Y 5 HOH D 2 602 6 HOH HOH . Y 5 HOH D 3 603 8 HOH HOH . Y 5 HOH D 4 604 17 HOH HOH . Y 5 HOH D 5 605 19 HOH HOH . Y 5 HOH D 6 606 21 HOH HOH . Y 5 HOH D 7 607 25 HOH HOH . Y 5 HOH D 8 608 26 HOH HOH . Y 5 HOH D 9 609 32 HOH HOH . Y 5 HOH D 10 610 35 HOH HOH . Y 5 HOH D 11 611 40 HOH HOH . Y 5 HOH D 12 612 43 HOH HOH . Y 5 HOH D 13 613 45 HOH HOH . Y 5 HOH D 14 614 52 HOH HOH . Z 5 HOH E 1 601 7 HOH HOH . Z 5 HOH E 2 602 42 HOH HOH . AA 5 HOH F 1 601 10 HOH HOH . AA 5 HOH F 2 602 50 HOH HOH . BA 5 HOH G 1 601 1 HOH HOH . BA 5 HOH G 2 602 9 HOH HOH . BA 5 HOH G 3 603 20 HOH HOH . BA 5 HOH G 4 604 22 HOH HOH . BA 5 HOH G 5 605 31 HOH HOH . BA 5 HOH G 6 606 33 HOH HOH . BA 5 HOH G 7 607 37 HOH HOH . BA 5 HOH G 8 608 39 HOH HOH . BA 5 HOH G 9 609 47 HOH HOH . CA 5 HOH H 1 601 24 HOH HOH . CA 5 HOH H 2 602 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . T 2 47.101 -72.753 58.801 1 63.18 ? CHA HEM 501 H 1 HETATM 2 C CHB HEM . . . T 2 43.497 -71.114 55.994 1 63.32 ? CHB HEM 501 H 1 HETATM 3 C CHC HEM . . . T 2 46.68 -68.031 54.018 1 59.93 ? CHC HEM 501 H 1 HETATM 4 C CHD HEM . . . T 2 49.969 -69.04 57.477 1 60.56 ? CHD HEM 501 H 1 HETATM 5 C C1A HEM . . . T 2 45.863 -72.623 58.214 1 63.26 ? C1A HEM 501 H 1 HETATM 6 C C2A HEM . . . T 2 44.678 -73.394 58.505 1 63.97 ? C2A HEM 501 H 1 HETATM 7 C C3A HEM . . . T 2 43.679 -72.937 57.73 1 63.97 ? C3A HEM 501 H 1 HETATM 8 C C4A HEM . . . T 2 44.205 -71.861 56.919 1 63.83 ? C4A HEM 501 H 1 HETATM 9 C CMA HEM . . . T 2 42.212 -73.433 57.676 1 64.44 ? CMA HEM 501 H 1 HETATM 10 C CAA HEM . . . T 2 44.602 -74.543 59.539 1 66.64 ? CAA HEM 501 H 1 HETATM 11 C CBA HEM . . . T 2 43.872 -74.143 60.83 1 67.88 ? CBA HEM 501 H 1 HETATM 12 C CGA HEM . . . T 2 44.018 -75.305 61.781 1 68 ? CGA HEM 501 H 1 HETATM 13 O O1A HEM . . . T 2 43.682 -75.152 62.979 1 68.59 ? O1A HEM 501 H 1 HETATM 14 O O2A HEM . . . T 2 44.475 -76.389 61.342 1 67.55 ? O2A HEM 501 H 1 HETATM 15 C C1B HEM . . . T 2 44.033 -70.138 55.203 1 60.88 ? C1B HEM 501 H 1 HETATM 16 C C2B HEM . . . T 2 43.269 -69.341 54.274 1 61.71 ? C2B HEM 501 H 1 HETATM 17 C C3B HEM . . . T 2 44.151 -68.514 53.695 1 62.16 ? C3B HEM 501 H 1 HETATM 18 C C4B HEM . . . T 2 45.492 -68.739 54.279 1 61 ? C4B HEM 501 H 1 HETATM 19 C CMB HEM . . . T 2 41.727 -69.443 54.023 1 60.32 ? CMB HEM 501 H 1 HETATM 20 C CAB HEM . . . T 2 43.806 -67.445 52.624 1 63.55 ? CAB HEM 501 H 1 HETATM 21 C CBB HEM . . . T 2 42.889 -67.696 51.637 1 63.15 ? CBB HEM 501 H 1 HETATM 22 C C1C HEM . . . T 2 47.802 -68.047 54.794 1 59.65 ? C1C HEM 501 H 1 HETATM 23 C C2C HEM . . . T 2 48.913 -67.093 54.708 1 59.16 ? C2C HEM 501 H 1 HETATM 24 C C3C HEM . . . T 2 49.821 -67.359 55.675 1 58.9 ? C3C HEM 501 H 1 HETATM 25 C C4C HEM . . . T 2 49.312 -68.479 56.412 1 60.3 ? C4C HEM 501 H 1 HETATM 26 C CMC HEM . . . T 2 49.022 -65.957 53.676 1 58.69 ? CMC HEM 501 H 1 HETATM 27 C CAC HEM . . . T 2 51.169 -66.628 55.984 1 58.97 ? CAC HEM 501 H 1 HETATM 28 C CBC HEM . . . T 2 51.437 -66.128 57.197 1 60.35 ? CBC HEM 501 H 1 HETATM 29 C C1D HEM . . . T 2 49.583 -70.203 58.041 1 60.61 ? C1D HEM 501 H 1 HETATM 30 C C2D HEM . . . T 2 50.426 -71.095 58.788 1 60.65 ? C2D HEM 501 H 1 HETATM 31 C C3D HEM . . . T 2 49.521 -72.246 59.208 1 61.5 ? C3D HEM 501 H 1 HETATM 32 C C4D HEM . . . T 2 48.212 -71.933 58.652 1 62.56 ? C4D HEM 501 H 1 HETATM 33 C CMD HEM . . . T 2 51.913 -70.929 59.104 1 60.75 ? CMD HEM 501 H 1 HETATM 34 C CAD HEM . . . T 2 49.912 -73.479 60.049 1 61.32 ? CAD HEM 501 H 1 HETATM 35 C CBD HEM . . . T 2 49.168 -73.39 61.389 1 62.75 ? CBD HEM 501 H 1 HETATM 36 C CGD HEM . . . T 2 50.003 -73.704 62.614 1 61.93 ? CGD HEM 501 H 1 HETATM 37 O O1D HEM . . . T 2 49.573 -73.311 63.735 1 60.83 ? O1D HEM 501 H 1 HETATM 38 O O2D HEM . . . T 2 51.081 -74.346 62.473 1 61.47 ? O2D HEM 501 H 1 HETATM 39 N NA HEM . . . T 2 45.54 -71.694 57.251 1 63.26 ? NA HEM 501 H 1 HETATM 40 N NB HEM . . . T 2 45.36 -69.731 55.215 1 60.57 ? NB HEM 501 H 1 HETATM 41 N NC HEM . . . T 2 48.085 -68.883 55.867 1 60.88 ? NC HEM 501 H 1 HETATM 42 N ND HEM . . . T 2 48.289 -70.703 57.972 1 62.45 ? ND HEM 501 H 1 HETATM 43 FE FE HEM . . . T 2 46.599 -70.125 56.763 1 61.61 ? FE HEM 501 H 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 57 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #