data_4EJI # _model_server_result.job_id -LUzdNbeCasKPXisbeqMjA _model_server_result.datetime_utc '2024-10-17 18:27:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eji # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4EJI # _exptl.entry_id 4EJI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EJI _cell.length_a 122.807 _cell.length_b 122.807 _cell.length_c 194.213 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EJI _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 417 A CYS 439 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc2 B FE HEM . A HEM 501 1_555 D N1 0QA . A 0QA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 157 n n CHA C4D HEM doub 158 n n CHA HHA HEM sing 159 n n CHB C4A HEM sing 160 n n CHB C1B HEM doub 161 n n CHB HHB HEM sing 162 n n CHC C4B HEM sing 163 n n CHC C1C HEM doub 164 n n CHC HHC HEM sing 165 n n CHD C4C HEM doub 166 n n CHD C1D HEM sing 167 n n CHD HHD HEM sing 168 n n C1A C2A HEM doub 169 n y C1A NA HEM sing 170 n y C2A C3A HEM sing 171 n y C2A CAA HEM sing 172 n n C3A C4A HEM doub 173 n y C3A CMA HEM sing 174 n n C4A NA HEM sing 175 n y CMA HMA HEM sing 176 n n CMA HMAA HEM sing 177 n n CMA HMAB HEM sing 178 n n CAA CBA HEM sing 179 n n CAA HAA HEM sing 180 n n CAA HAAA HEM sing 181 n n CBA CGA HEM sing 182 n n CBA HBA HEM sing 183 n n CBA HBAA HEM sing 184 n n CGA O1A HEM doub 185 n n CGA O2A HEM sing 186 n n C1B C2B HEM sing 187 n n C1B NB HEM sing 188 n n C2B C3B HEM doub 189 n n C2B CMB HEM sing 190 n n C3B C4B HEM sing 191 n n C3B CAB HEM sing 192 n n C4B NB HEM doub 193 n n CMB HMB HEM sing 194 n n CMB HMBA HEM sing 195 n n CMB HMBB HEM sing 196 n n CAB CBB HEM doub 197 n n CAB HAB HEM sing 198 n n CBB HBB HEM sing 199 n n CBB HBBA HEM sing 200 n n C1C C2C HEM sing 201 n y C1C NC HEM sing 202 n y C2C C3C HEM doub 203 n y C2C CMC HEM sing 204 n n C3C C4C HEM sing 205 n y C3C CAC HEM sing 206 n n C4C NC HEM sing 207 n y CMC HMC HEM sing 208 n n CMC HMCA HEM sing 209 n n CMC HMCB HEM sing 210 n n CAC CBC HEM doub 211 n n CAC HAC HEM sing 212 n n CBC HBC HEM sing 213 n n CBC HBCA HEM sing 214 n n C1D C2D HEM sing 215 n n C1D ND HEM doub 216 n n C2D C3D HEM doub 217 n n C2D CMD HEM sing 218 n n C3D C4D HEM sing 219 n n C3D CAD HEM sing 220 n n C4D ND HEM sing 221 n n CMD HMD HEM sing 222 n n CMD HMDA HEM sing 223 n n CMD HMDB HEM sing 224 n n CAD CBD HEM sing 225 n n CAD HAD HEM sing 226 n n CAD HADA HEM sing 227 n n CBD CGD HEM sing 228 n n CBD HBD HEM sing 229 n n CBD HBDA HEM sing 230 n n CGD O1D HEM doub 231 n n CGD O2D HEM sing 232 n n O2A H2A HEM sing 233 n n O2D H2D HEM sing 234 n n FE NA HEM sing 235 n n FE NB HEM sing 236 n n FE NC HEM sing 237 n n FE ND HEM sing 238 n n # _atom_sites.entry_id 4EJI _atom_sites.fract_transf_matrix[1][1] 0.008143 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 500 HEM HEM . C 3 0QA A 1 502 1 0QA NNK . D 3 0QA A 1 503 2 0QA NNK . E 4 HOH A 1 601 1 HOH HOH . E 4 HOH A 2 602 2 HOH HOH . E 4 HOH A 3 603 5 HOH HOH . E 4 HOH A 4 604 6 HOH HOH . E 4 HOH A 5 605 7 HOH HOH . E 4 HOH A 6 606 8 HOH HOH . E 4 HOH A 7 607 9 HOH HOH . E 4 HOH A 8 608 10 HOH HOH . E 4 HOH A 9 609 11 HOH HOH . E 4 HOH A 10 610 12 HOH HOH . E 4 HOH A 11 611 13 HOH HOH . E 4 HOH A 12 612 14 HOH HOH . E 4 HOH A 13 613 15 HOH HOH . E 4 HOH A 14 614 16 HOH HOH . E 4 HOH A 15 615 17 HOH HOH . E 4 HOH A 16 616 18 HOH HOH . E 4 HOH A 17 617 19 HOH HOH . E 4 HOH A 18 618 20 HOH HOH . E 4 HOH A 19 619 21 HOH HOH . E 4 HOH A 20 620 22 HOH HOH . E 4 HOH A 21 621 23 HOH HOH . E 4 HOH A 22 622 24 HOH HOH . E 4 HOH A 23 623 25 HOH HOH . E 4 HOH A 24 624 26 HOH HOH . E 4 HOH A 25 625 27 HOH HOH . E 4 HOH A 26 626 28 HOH HOH . E 4 HOH A 27 627 29 HOH HOH . E 4 HOH A 28 628 30 HOH HOH . E 4 HOH A 29 629 31 HOH HOH . E 4 HOH A 30 630 32 HOH HOH . E 4 HOH A 31 631 33 HOH HOH . E 4 HOH A 32 632 34 HOH HOH . E 4 HOH A 33 633 35 HOH HOH . E 4 HOH A 34 634 36 HOH HOH . E 4 HOH A 35 635 37 HOH HOH . E 4 HOH A 36 636 38 HOH HOH . E 4 HOH A 37 637 39 HOH HOH . E 4 HOH A 38 638 40 HOH HOH . E 4 HOH A 39 639 41 HOH HOH . E 4 HOH A 40 640 42 HOH HOH . E 4 HOH A 41 641 43 HOH HOH . E 4 HOH A 42 642 44 HOH HOH . E 4 HOH A 43 643 45 HOH HOH . E 4 HOH A 44 644 46 HOH HOH . E 4 HOH A 45 645 47 HOH HOH . E 4 HOH A 46 646 49 HOH HOH . E 4 HOH A 47 647 50 HOH HOH . E 4 HOH A 48 648 51 HOH HOH . E 4 HOH A 49 649 52 HOH HOH . E 4 HOH A 50 650 53 HOH HOH . E 4 HOH A 51 651 54 HOH HOH . E 4 HOH A 52 652 55 HOH HOH . E 4 HOH A 53 653 56 HOH HOH . E 4 HOH A 54 654 57 HOH HOH . E 4 HOH A 55 655 58 HOH HOH . E 4 HOH A 56 656 59 HOH HOH . E 4 HOH A 57 657 60 HOH HOH . E 4 HOH A 58 658 61 HOH HOH . E 4 HOH A 59 659 62 HOH HOH . E 4 HOH A 60 660 63 HOH HOH . E 4 HOH A 61 661 1 HOH HOH . E 4 HOH A 62 662 2 HOH HOH . E 4 HOH A 63 663 3 HOH HOH . E 4 HOH A 64 664 1 HOH HOH . E 4 HOH A 65 665 3 HOH HOH . E 4 HOH A 66 666 4 HOH HOH . E 4 HOH A 67 667 5 HOH HOH . E 4 HOH A 68 668 8 HOH HOH . E 4 HOH A 69 669 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 62 -22.618 23.981 1 31.94 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . B 2 61.772 -25.617 27.737 1 28.79 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . B 2 57.722 -23.373 29.266 1 30.58 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . B 2 57.922 -20.37 25.443 1 28.83 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . B 2 62.282 -23.657 24.836 1 32.39 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . B 2 63.439 -24.538 24.757 1 33.69 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . B 2 63.393 -25.357 25.824 1 29.37 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . B 2 62.198 -25.001 26.589 1 33.02 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . B 2 64.303 -26.511 26.234 1 28.14 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . B 2 64.48 -24.47 23.608 1 31.19 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . B 2 65.381 -23.25 23.757 1 30.84 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . B 2 66.47 -23.425 22.732 1 33.63 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . B 2 67.551 -23.898 23.125 1 30.86 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . B 2 66.235 -23.156 21.531 1 31.58 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . B 2 60.618 -25.358 28.467 1 32.44 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . B 2 60.11 -26.119 29.62 1 30.64 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . B 2 58.977 -25.465 30.005 1 30.37 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . B 2 58.776 -24.285 29.18 1 30.37 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . B 2 60.712 -27.449 30.171 1 30.79 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . B 2 57.988 -25.798 31.109 1 28 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . B 2 58.244 -26.682 32.07 1 31.75 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . B 2 57.422 -22.367 28.377 1 35.01 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . B 2 56.336 -21.412 28.461 1 36.7 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . B 2 56.385 -20.596 27.413 1 37.03 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . B 2 57.531 -20.972 26.622 1 36.12 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . B 2 55.312 -21.354 29.573 1 31.27 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . B 2 55.399 -19.452 27.104 1 36.32 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . B 2 55.8 -18.223 27.375 1 42.58 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . B 2 59.033 -20.669 24.708 1 31.6 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . B 2 59.387 -20.003 23.472 1 31.37 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . B 2 60.658 -20.683 23.014 1 30.51 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . B 2 60.942 -21.723 23.999 1 31.27 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . B 2 58.617 -18.828 22.78 1 32.69 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . B 2 61.466 -20.308 21.775 1 31.87 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . B 2 62.5 -19.237 22.167 1 33.32 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . B 2 63.401 -18.905 20.975 1 35.08 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . B 2 64.279 -17.999 21.076 1 37.93 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . B 2 63.272 -19.548 19.904 1 34.25 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . B 2 61.559 -23.959 25.967 1 28.2 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . B 2 59.774 -24.278 28.261 1 30.56 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . B 2 58.11 -22.062 27.241 1 34.72 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . B 2 59.955 -21.676 24.96 1 31.57 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . B 2 59.836 -23.024 26.59 1 31.05 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #