data_4EJI # _model_server_result.job_id s-SjD9t7VzcxCM_KXvra7w _model_server_result.datetime_utc '2024-11-27 18:20:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eji # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 4EJI # _exptl.entry_id 4EJI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 207.229 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[methyl(nitroso)amino]-1-(pyridin-3-yl)butan-1-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EJI _cell.length_a 122.807 _cell.length_b 122.807 _cell.length_c 194.213 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EJI _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 417 A CYS 439 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc2 B FE HEM . A HEM 501 1_555 D N1 0QA . A 0QA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C10 H13 N3 O2' _chem_comp.formula_weight 207.229 _chem_comp.id 0QA _chem_comp.mon_nstd_flag . _chem_comp.name 4-[methyl(nitroso)amino]-1-(pyridin-3-yl)butan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 0QA doub 1 n y C2 C3 0QA sing 2 n y C1 C5 0QA sing 3 n y C3 N1 0QA doub 4 n y O1 C6 0QA doub 5 n n C5 C6 0QA sing 6 n n C5 C4 0QA doub 7 n y C6 C7 0QA sing 8 n n N1 C4 0QA sing 9 n y C7 C8 0QA sing 10 n n C9 C8 0QA sing 11 n n C9 N2 0QA sing 12 n n N2 C10 0QA sing 13 n n N2 N3 0QA sing 14 n n N3 O2 0QA doub 15 n n C10 H1 0QA sing 16 n n C10 H2 0QA sing 17 n n C10 H3 0QA sing 18 n n C9 H4 0QA sing 19 n n C9 H5 0QA sing 20 n n C8 H6 0QA sing 21 n n C8 H7 0QA sing 22 n n C7 H8 0QA sing 23 n n C7 H9 0QA sing 24 n n C1 H10 0QA sing 25 n n C2 H11 0QA sing 26 n n C3 H12 0QA sing 27 n n C4 H13 0QA sing 28 n n # _atom_sites.entry_id 4EJI _atom_sites.fract_transf_matrix[1][1] 0.008143 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 500 HEM HEM . C 3 0QA A 1 502 1 0QA NNK . D 3 0QA A 1 503 2 0QA NNK . E 4 HOH A 1 601 1 HOH HOH . E 4 HOH A 2 602 2 HOH HOH . E 4 HOH A 3 603 5 HOH HOH . E 4 HOH A 4 604 6 HOH HOH . E 4 HOH A 5 605 7 HOH HOH . E 4 HOH A 6 606 8 HOH HOH . E 4 HOH A 7 607 9 HOH HOH . E 4 HOH A 8 608 10 HOH HOH . E 4 HOH A 9 609 11 HOH HOH . E 4 HOH A 10 610 12 HOH HOH . E 4 HOH A 11 611 13 HOH HOH . E 4 HOH A 12 612 14 HOH HOH . E 4 HOH A 13 613 15 HOH HOH . E 4 HOH A 14 614 16 HOH HOH . E 4 HOH A 15 615 17 HOH HOH . E 4 HOH A 16 616 18 HOH HOH . E 4 HOH A 17 617 19 HOH HOH . E 4 HOH A 18 618 20 HOH HOH . E 4 HOH A 19 619 21 HOH HOH . E 4 HOH A 20 620 22 HOH HOH . E 4 HOH A 21 621 23 HOH HOH . E 4 HOH A 22 622 24 HOH HOH . E 4 HOH A 23 623 25 HOH HOH . E 4 HOH A 24 624 26 HOH HOH . E 4 HOH A 25 625 27 HOH HOH . E 4 HOH A 26 626 28 HOH HOH . E 4 HOH A 27 627 29 HOH HOH . E 4 HOH A 28 628 30 HOH HOH . E 4 HOH A 29 629 31 HOH HOH . E 4 HOH A 30 630 32 HOH HOH . E 4 HOH A 31 631 33 HOH HOH . E 4 HOH A 32 632 34 HOH HOH . E 4 HOH A 33 633 35 HOH HOH . E 4 HOH A 34 634 36 HOH HOH . E 4 HOH A 35 635 37 HOH HOH . E 4 HOH A 36 636 38 HOH HOH . E 4 HOH A 37 637 39 HOH HOH . E 4 HOH A 38 638 40 HOH HOH . E 4 HOH A 39 639 41 HOH HOH . E 4 HOH A 40 640 42 HOH HOH . E 4 HOH A 41 641 43 HOH HOH . E 4 HOH A 42 642 44 HOH HOH . E 4 HOH A 43 643 45 HOH HOH . E 4 HOH A 44 644 46 HOH HOH . E 4 HOH A 45 645 47 HOH HOH . E 4 HOH A 46 646 49 HOH HOH . E 4 HOH A 47 647 50 HOH HOH . E 4 HOH A 48 648 51 HOH HOH . E 4 HOH A 49 649 52 HOH HOH . E 4 HOH A 50 650 53 HOH HOH . E 4 HOH A 51 651 54 HOH HOH . E 4 HOH A 52 652 55 HOH HOH . E 4 HOH A 53 653 56 HOH HOH . E 4 HOH A 54 654 57 HOH HOH . E 4 HOH A 55 655 58 HOH HOH . E 4 HOH A 56 656 59 HOH HOH . E 4 HOH A 57 657 60 HOH HOH . E 4 HOH A 58 658 61 HOH HOH . E 4 HOH A 59 659 62 HOH HOH . E 4 HOH A 60 660 63 HOH HOH . E 4 HOH A 61 661 1 HOH HOH . E 4 HOH A 62 662 2 HOH HOH . E 4 HOH A 63 663 3 HOH HOH . E 4 HOH A 64 664 1 HOH HOH . E 4 HOH A 65 665 3 HOH HOH . E 4 HOH A 66 666 4 HOH HOH . E 4 HOH A 67 667 5 HOH HOH . E 4 HOH A 68 668 8 HOH HOH . E 4 HOH A 69 669 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 0QA . . . D 3 53.923 -23.792 18.407 1 47.3 ? O2 0QA 503 A 1 HETATM 2 N N3 0QA . . . D 3 54.896 -24.381 18.815 1 44.25 ? N3 0QA 503 A 1 HETATM 3 N N2 0QA . . . D 3 54.858 -25.715 18.864 1 47.56 ? N2 0QA 503 A 1 HETATM 4 C C10 0QA . . . D 3 53.906 -26.357 17.923 1 45.2 ? C10 0QA 503 A 1 HETATM 5 C C9 0QA . . . D 3 56.215 -26.225 18.576 1 49.97 ? C9 0QA 503 A 1 HETATM 6 C C8 0QA . . . D 3 57.304 -25.688 19.516 1 51.8 ? C8 0QA 503 A 1 HETATM 7 C C7 0QA . . . D 3 56.839 -25.232 20.912 1 52.36 ? C7 0QA 503 A 1 HETATM 8 C C6 0QA . . . D 3 58.07 -24.887 21.738 1 51.91 ? C6 0QA 503 A 1 HETATM 9 O O1 0QA . . . D 3 59.058 -24.377 21.255 1 52.68 ? O1 0QA 503 A 1 HETATM 10 C C5 0QA . . . D 3 58.096 -25.113 23.191 1 48.25 ? C5 0QA 503 A 1 HETATM 11 C C1 0QA . . . D 3 57.44 -26.18 23.765 1 49.52 ? C1 0QA 503 A 1 HETATM 12 C C2 0QA . . . D 3 57.526 -26.242 25.155 1 49.95 ? C2 0QA 503 A 1 HETATM 13 C C3 0QA . . . D 3 58.236 -25.282 25.87 1 46.98 ? C3 0QA 503 A 1 HETATM 14 N N1 0QA . . . D 3 58.823 -24.235 25.286 1 42.87 ? N1 0QA 503 A 1 HETATM 15 C C4 0QA . . . D 3 58.756 -24.176 23.966 1 46.4 ? C4 0QA 503 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #