data_4EJJ
#
_model_server_result.job_id            OJ0jP3g07upbLSAg5mH7uQ 
_model_server_result.datetime_utc      '2024-11-24 03:30:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ejj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    4EJJ 
#
_exptl.entry_id    4EJJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              162.232 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (S)-3-(1-METHYLPYRROLIDIN-2-YL)PYRIDINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.7 
_cell.angle_gamma         90 
_cell.entry_id            4EJJ 
_cell.length_a            71.214 
_cell.length_b            194.038 
_cell.length_c            90.266 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4EJJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 417 A CYS 439 1_555 E FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc2 B SG CYS 417 B CYS 439 1_555 G FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc3 C SG CYS 417 C CYS 439 1_555 I FE HEM . C HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc4 D SG CYS 417 D CYS 439 1_555 L FE HEM . D HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
#
_chem_comp.formula           'C10 H14 N2' 
_chem_comp.formula_weight    162.232 
_chem_comp.id                NCT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (S)-3-(1-METHYLPYRROLIDIN-2-YL)PYRIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(S)-(-)-NICOTINE;3-[(2S)-1-METHYL-2-PYRROLIDINYL] PYRIDINE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C1 NCT doub 319 n y 
N1 C5 NCT sing 320 n y 
C1 C2 NCT sing 321 n y 
C1 HC1 NCT sing 322 n n 
C2 C3 NCT doub 323 n y 
C2 C6 NCT sing 324 n n 
C3 C4 NCT sing 325 n y 
C3 HC3 NCT sing 326 n n 
C4 C5 NCT doub 327 n y 
C4 HC4 NCT sing 328 n n 
C5 HC5 NCT sing 329 n n 
N2 C6 NCT sing 330 n n 
N2 C9 NCT sing 331 n n 
N2 C10 NCT sing 332 n n 
C6 C7 NCT sing 333 n n 
C6 HC6 NCT sing 334 n n 
C7 C8 NCT sing 335 n n 
C7 HC71 NCT sing 336 n n 
C7 HC72 NCT sing 337 n n 
C8 C9 NCT sing 338 n n 
C8 HC81 NCT sing 339 n n 
C8 HC82 NCT sing 340 n n 
C9 HC91 NCT sing 341 n n 
C9 HC92 NCT sing 342 n n 
C10 H101 NCT sing 343 n n 
C10 H102 NCT sing 344 n n 
C10 H103 NCT sing 345 n n 
#
_atom_sites.entry_id                     4EJJ 
_atom_sites.fract_transf_matrix[1][1]    0.014042 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003165 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005154 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011356 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 500 500 HEM HEM . 
F 3 NCT A 1 501 501 NCT NCT . 
G 2 HEM B 1 500 500 HEM HEM . 
H 3 NCT B 1 501 501 NCT NCT . 
I 2 HEM C 1 500 500 HEM HEM . 
J 3 NCT C 1 501 501 NCT NCT . 
K 3 NCT D 1 501 501 NCT NCT . 
L 2 HEM D 1 502 500 HEM HEM . 
M 4 HOH A 1 601 1 HOH HOH . 
M 4 HOH A 2 602 4 HOH HOH . 
M 4 HOH A 3 603 9 HOH HOH . 
M 4 HOH A 4 604 11 HOH HOH . 
M 4 HOH A 5 605 13 HOH HOH . 
M 4 HOH A 6 606 14 HOH HOH . 
M 4 HOH A 7 607 17 HOH HOH . 
M 4 HOH A 8 608 18 HOH HOH . 
M 4 HOH A 9 609 19 HOH HOH . 
M 4 HOH A 10 610 20 HOH HOH . 
M 4 HOH A 11 611 22 HOH HOH . 
M 4 HOH A 12 612 24 HOH HOH . 
M 4 HOH A 13 613 25 HOH HOH . 
M 4 HOH A 14 614 27 HOH HOH . 
M 4 HOH A 15 615 28 HOH HOH . 
M 4 HOH A 16 616 29 HOH HOH . 
M 4 HOH A 17 617 30 HOH HOH . 
M 4 HOH A 18 618 32 HOH HOH . 
M 4 HOH A 19 619 33 HOH HOH . 
M 4 HOH A 20 620 37 HOH HOH . 
M 4 HOH A 21 621 38 HOH HOH . 
M 4 HOH A 22 622 40 HOH HOH . 
M 4 HOH A 23 623 41 HOH HOH . 
M 4 HOH A 24 624 46 HOH HOH . 
M 4 HOH A 25 625 50 HOH HOH . 
M 4 HOH A 26 626 57 HOH HOH . 
M 4 HOH A 27 627 62 HOH HOH . 
M 4 HOH A 28 628 66 HOH HOH . 
M 4 HOH A 29 629 67 HOH HOH . 
M 4 HOH A 30 630 68 HOH HOH . 
M 4 HOH A 31 631 69 HOH HOH . 
M 4 HOH A 32 632 70 HOH HOH . 
M 4 HOH A 33 633 71 HOH HOH . 
M 4 HOH A 34 634 72 HOH HOH . 
M 4 HOH A 35 635 74 HOH HOH . 
M 4 HOH A 36 636 75 HOH HOH . 
M 4 HOH A 37 637 80 HOH HOH . 
M 4 HOH A 38 638 81 HOH HOH . 
M 4 HOH A 39 639 82 HOH HOH . 
M 4 HOH A 40 640 84 HOH HOH . 
M 4 HOH A 41 641 87 HOH HOH . 
M 4 HOH A 42 642 89 HOH HOH . 
M 4 HOH A 43 643 92 HOH HOH . 
M 4 HOH A 44 644 100 HOH HOH . 
M 4 HOH A 45 645 102 HOH HOH . 
M 4 HOH A 46 646 104 HOH HOH . 
M 4 HOH A 47 647 106 HOH HOH . 
M 4 HOH A 48 648 110 HOH HOH . 
M 4 HOH A 49 649 114 HOH HOH . 
M 4 HOH A 50 650 134 HOH HOH . 
M 4 HOH A 51 651 135 HOH HOH . 
N 4 HOH B 1 601 2 HOH HOH . 
N 4 HOH B 2 602 7 HOH HOH . 
N 4 HOH B 3 603 8 HOH HOH . 
N 4 HOH B 4 604 15 HOH HOH . 
N 4 HOH B 5 605 16 HOH HOH . 
N 4 HOH B 6 606 21 HOH HOH . 
N 4 HOH B 7 607 26 HOH HOH . 
N 4 HOH B 8 608 43 HOH HOH . 
N 4 HOH B 9 609 56 HOH HOH . 
N 4 HOH B 10 610 63 HOH HOH . 
N 4 HOH B 11 611 78 HOH HOH . 
N 4 HOH B 12 612 86 HOH HOH . 
N 4 HOH B 13 613 88 HOH HOH . 
N 4 HOH B 14 614 90 HOH HOH . 
N 4 HOH B 15 615 97 HOH HOH . 
N 4 HOH B 16 616 98 HOH HOH . 
N 4 HOH B 17 617 99 HOH HOH . 
N 4 HOH B 18 618 108 HOH HOH . 
N 4 HOH B 19 619 111 HOH HOH . 
N 4 HOH B 20 620 112 HOH HOH . 
N 4 HOH B 21 621 116 HOH HOH . 
N 4 HOH B 22 622 120 HOH HOH . 
N 4 HOH B 23 623 121 HOH HOH . 
N 4 HOH B 24 624 123 HOH HOH . 
N 4 HOH B 25 625 125 HOH HOH . 
N 4 HOH B 26 626 127 HOH HOH . 
N 4 HOH B 27 627 128 HOH HOH . 
N 4 HOH B 28 628 133 HOH HOH . 
N 4 HOH B 29 629 139 HOH HOH . 
O 4 HOH C 1 601 6 HOH HOH . 
O 4 HOH C 2 602 23 HOH HOH . 
O 4 HOH C 3 603 36 HOH HOH . 
O 4 HOH C 4 604 39 HOH HOH . 
O 4 HOH C 5 605 48 HOH HOH . 
O 4 HOH C 6 606 49 HOH HOH . 
O 4 HOH C 7 607 54 HOH HOH . 
O 4 HOH C 8 608 61 HOH HOH . 
O 4 HOH C 9 609 76 HOH HOH . 
O 4 HOH C 10 610 77 HOH HOH . 
O 4 HOH C 11 611 85 HOH HOH . 
O 4 HOH C 12 612 93 HOH HOH . 
O 4 HOH C 13 613 96 HOH HOH . 
O 4 HOH C 14 614 105 HOH HOH . 
O 4 HOH C 15 615 107 HOH HOH . 
O 4 HOH C 16 616 117 HOH HOH . 
O 4 HOH C 17 617 118 HOH HOH . 
O 4 HOH C 18 618 119 HOH HOH . 
O 4 HOH C 19 619 124 HOH HOH . 
O 4 HOH C 20 620 126 HOH HOH . 
O 4 HOH C 21 621 130 HOH HOH . 
O 4 HOH C 22 622 136 HOH HOH . 
O 4 HOH C 23 623 137 HOH HOH . 
P 4 HOH D 1 601 3 HOH HOH . 
P 4 HOH D 2 602 5 HOH HOH . 
P 4 HOH D 3 603 10 HOH HOH . 
P 4 HOH D 4 604 12 HOH HOH . 
P 4 HOH D 5 605 31 HOH HOH . 
P 4 HOH D 6 606 34 HOH HOH . 
P 4 HOH D 7 607 35 HOH HOH . 
P 4 HOH D 8 608 42 HOH HOH . 
P 4 HOH D 9 609 44 HOH HOH . 
P 4 HOH D 10 610 45 HOH HOH . 
P 4 HOH D 11 611 47 HOH HOH . 
P 4 HOH D 12 612 51 HOH HOH . 
P 4 HOH D 13 613 52 HOH HOH . 
P 4 HOH D 14 614 53 HOH HOH . 
P 4 HOH D 15 615 55 HOH HOH . 
P 4 HOH D 16 616 58 HOH HOH . 
P 4 HOH D 17 617 59 HOH HOH . 
P 4 HOH D 18 618 64 HOH HOH . 
P 4 HOH D 19 619 65 HOH HOH . 
P 4 HOH D 20 620 73 HOH HOH . 
P 4 HOH D 21 621 79 HOH HOH . 
P 4 HOH D 22 622 83 HOH HOH . 
P 4 HOH D 23 623 91 HOH HOH . 
P 4 HOH D 24 624 94 HOH HOH . 
P 4 HOH D 25 625 95 HOH HOH . 
P 4 HOH D 26 626 101 HOH HOH . 
P 4 HOH D 27 627 103 HOH HOH . 
P 4 HOH D 28 628 109 HOH HOH . 
P 4 HOH D 29 629 113 HOH HOH . 
P 4 HOH D 30 630 115 HOH HOH . 
P 4 HOH D 31 631 122 HOH HOH . 
P 4 HOH D 32 632 129 HOH HOH . 
P 4 HOH D 33 633 131 HOH HOH . 
P 4 HOH D 34 634 132 HOH HOH . 
P 4 HOH D 35 635 138 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 NCT . . . F 3 -16.084 -12.177 -6.33 1 48.71 ? N1 NCT 501 A 1 
HETATM 2 C C1 NCT . . . F 3 -15.052 -13.008 -6.143 1 46.21 ? C1 NCT 501 A 1 
HETATM 3 C C2 NCT . . . F 3 -14.205 -13.274 -7.214 1 49.5 ? C2 NCT 501 A 1 
HETATM 4 C C3 NCT . . . F 3 -14.392 -12.687 -8.468 1 48.43 ? C3 NCT 501 A 1 
HETATM 5 C C4 NCT . . . F 3 -15.466 -11.831 -8.614 1 49.2 ? C4 NCT 501 A 1 
HETATM 6 C C5 NCT . . . F 3 -16.302 -11.586 -7.519 1 49.18 ? C5 NCT 501 A 1 
HETATM 7 N N2 NCT . . . F 3 -12.756 -15.08 -8.028 1 48.54 ? N2 NCT 501 A 1 
HETATM 8 C C6 NCT . . . F 3 -13.135 -14.235 -6.938 1 48.66 ? C6 NCT 501 A 1 
HETATM 9 C C7 NCT . . . F 3 -11.762 -13.704 -6.652 1 49.1 ? C7 NCT 501 A 1 
HETATM 10 C C8 NCT . . . F 3 -10.954 -14.991 -6.653 1 45.88 ? C8 NCT 501 A 1 
HETATM 11 C C9 NCT . . . F 3 -11.636 -15.926 -7.616 1 49.39 ? C9 NCT 501 A 1 
HETATM 12 C C10 NCT . . . F 3 -13.33 -15.1 -9.345 1 49.91 ? C10 NCT 501 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           12 
#