data_4EJL
#
_model_server_result.job_id            1s1SjUfKbQkBBy2rQC5xeg 
_model_server_result.datetime_utc      '2024-10-11 04:31:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ejl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":104}' 
#
_entry.id    4EJL 
#
_exptl.entry_id    4EJL 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4EJL 
_cell.length_a            28.815 
_cell.length_b            65.91 
_cell.length_c            92.514 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4EJL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 J N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     4EJL 
_atom_sites.fract_transf_matrix[1][1]    0.034704 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015172 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010809 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PEG A 1 101 1 PEG PEG . 
D 3 DMS A 1 102 1 DMS DMS . 
E 4 GOL A 1 103 5 GOL GOL . 
F 4 GOL A 1 104 6 GOL GOL . 
G 4 GOL A 1 105 7 GOL GOL . 
H 5 IOP A 1 106 30 IOP FN1 . 
I 3 DMS B 1 101 2 DMS DMS . 
J 4 GOL B 1 102 3 GOL GOL . 
K 6 HOH A 1 201 1 HOH HOH . 
K 6 HOH A 2 202 14 HOH HOH . 
K 6 HOH A 3 203 16 HOH HOH . 
K 6 HOH A 4 204 18 HOH HOH . 
K 6 HOH A 5 205 24 HOH HOH . 
K 6 HOH A 6 206 26 HOH HOH . 
K 6 HOH A 7 207 33 HOH HOH . 
K 6 HOH A 8 208 34 HOH HOH . 
K 6 HOH A 9 209 35 HOH HOH . 
K 6 HOH A 10 210 36 HOH HOH . 
K 6 HOH A 11 211 37 HOH HOH . 
K 6 HOH A 12 212 38 HOH HOH . 
K 6 HOH A 13 213 39 HOH HOH . 
K 6 HOH A 14 214 42 HOH HOH . 
K 6 HOH A 15 215 46 HOH HOH . 
K 6 HOH A 16 216 50 HOH HOH . 
K 6 HOH A 17 217 52 HOH HOH . 
K 6 HOH A 18 218 53 HOH HOH . 
K 6 HOH A 19 219 56 HOH HOH . 
K 6 HOH A 20 220 61 HOH HOH . 
K 6 HOH A 21 221 64 HOH HOH . 
K 6 HOH A 22 222 68 HOH HOH . 
K 6 HOH A 23 223 70 HOH HOH . 
K 6 HOH A 24 224 72 HOH HOH . 
K 6 HOH A 25 225 73 HOH HOH . 
K 6 HOH A 26 226 76 HOH HOH . 
L 6 HOH B 1 201 10 HOH HOH . 
L 6 HOH B 2 202 11 HOH HOH . 
L 6 HOH B 3 203 12 HOH HOH . 
L 6 HOH B 4 204 17 HOH HOH . 
L 6 HOH B 5 205 21 HOH HOH . 
L 6 HOH B 6 206 22 HOH HOH . 
L 6 HOH B 7 207 31 HOH HOH . 
L 6 HOH B 8 208 40 HOH HOH . 
L 6 HOH B 9 209 41 HOH HOH . 
L 6 HOH B 10 210 44 HOH HOH . 
L 6 HOH B 11 211 45 HOH HOH . 
L 6 HOH B 12 212 48 HOH HOH . 
L 6 HOH B 13 213 51 HOH HOH . 
L 6 HOH B 14 214 57 HOH HOH . 
L 6 HOH B 15 215 58 HOH HOH . 
L 6 HOH B 16 216 65 HOH HOH . 
L 6 HOH B 17 217 67 HOH HOH . 
L 6 HOH B 18 218 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 4 -14.485 8.495 -13.516 1 44.8 ? C1 GOL 104 A 1 
HETATM 2 O O1 GOL . . . F 4 -14.435 8.585 -12.086 1 45.32 ? O1 GOL 104 A 1 
HETATM 3 C C2 GOL . . . F 4 -15.837 7.947 -13.968 1 43.86 ? C2 GOL 104 A 1 
HETATM 4 O O2 GOL . . . F 4 -15.923 8.023 -15.394 1 42.08 ? O2 GOL 104 A 1 
HETATM 5 C C3 GOL . . . F 4 -16.98 8.756 -13.36 1 45.12 ? C3 GOL 104 A 1 
HETATM 6 O O3 GOL . . . F 4 -18.15 7.934 -13.274 1 45.45 ? O3 GOL 104 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           6 
#