data_4EJM # _model_server_result.job_id Cx6o84ahhqx-BzEInU8Bhw _model_server_result.datetime_utc '2024-12-14 12:39:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ejm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4EJM # _exptl.entry_id 4EJM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EJM _cell.length_a 107.62 _cell.length_b 107.62 _cell.length_c 137.741 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EJM _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 107.62 0 0 3 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 107.62 0 0 4 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 22 A SER -1 1_555 A N MSE 23 A MSE 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C MSE 23 A MSE 0 1_555 A N MSE 24 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C MSE 24 A MSE 1 1_555 A N LYS 25 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale4 A C ARG 332 A ARG 309 1_555 A N MSE 333 A MSE 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 A C MSE 333 A MSE 310 1_555 A N ILE 334 A ILE 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A SG CYS 111 A CYS 88 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc2 A SG CYS 114 A CYS 91 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc3 A SG CYS 117 A CYS 94 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc4 A SG CYS 125 A CYS 102 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4EJM _atom_sites.fract_transf_matrix[1][1] 0.009292 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00726 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 NAP A 1 402 1 NAP NAP . D 4 EDO A 1 403 1 EDO EDO . E 4 EDO A 1 404 2 EDO EDO . F 4 EDO A 1 405 3 EDO EDO . G 5 HOH A 1 501 1 HOH HOH . G 5 HOH A 2 502 2 HOH HOH . G 5 HOH A 3 503 3 HOH HOH . G 5 HOH A 4 504 4 HOH HOH . G 5 HOH A 5 505 5 HOH HOH . G 5 HOH A 6 506 6 HOH HOH . G 5 HOH A 7 507 7 HOH HOH . G 5 HOH A 8 508 8 HOH HOH . G 5 HOH A 9 509 9 HOH HOH . G 5 HOH A 10 510 10 HOH HOH . G 5 HOH A 11 511 11 HOH HOH . G 5 HOH A 12 512 12 HOH HOH . G 5 HOH A 13 513 13 HOH HOH . G 5 HOH A 14 514 14 HOH HOH . G 5 HOH A 15 515 15 HOH HOH . G 5 HOH A 16 516 16 HOH HOH . G 5 HOH A 17 517 17 HOH HOH . G 5 HOH A 18 518 18 HOH HOH . G 5 HOH A 19 519 19 HOH HOH . G 5 HOH A 20 520 20 HOH HOH . G 5 HOH A 21 521 21 HOH HOH . G 5 HOH A 22 522 22 HOH HOH . G 5 HOH A 23 523 23 HOH HOH . G 5 HOH A 24 524 24 HOH HOH . G 5 HOH A 25 525 25 HOH HOH . G 5 HOH A 26 526 26 HOH HOH . G 5 HOH A 27 527 27 HOH HOH . G 5 HOH A 28 528 28 HOH HOH . G 5 HOH A 29 529 29 HOH HOH . G 5 HOH A 30 530 30 HOH HOH . G 5 HOH A 31 531 31 HOH HOH . G 5 HOH A 32 532 32 HOH HOH . G 5 HOH A 33 533 33 HOH HOH . G 5 HOH A 34 534 34 HOH HOH . G 5 HOH A 35 535 35 HOH HOH . G 5 HOH A 36 536 36 HOH HOH . G 5 HOH A 37 537 37 HOH HOH . G 5 HOH A 38 538 38 HOH HOH . G 5 HOH A 39 539 39 HOH HOH . G 5 HOH A 40 540 40 HOH HOH . G 5 HOH A 41 541 41 HOH HOH . G 5 HOH A 42 542 42 HOH HOH . G 5 HOH A 43 543 43 HOH HOH . G 5 HOH A 44 544 44 HOH HOH . G 5 HOH A 45 545 45 HOH HOH . G 5 HOH A 46 546 46 HOH HOH . G 5 HOH A 47 547 47 HOH HOH . G 5 HOH A 48 548 48 HOH HOH . G 5 HOH A 49 549 49 HOH HOH . G 5 HOH A 50 550 50 HOH HOH . G 5 HOH A 51 551 51 HOH HOH . G 5 HOH A 52 552 52 HOH HOH . G 5 HOH A 53 553 53 HOH HOH . G 5 HOH A 54 554 54 HOH HOH . G 5 HOH A 55 555 55 HOH HOH . G 5 HOH A 56 556 56 HOH HOH . G 5 HOH A 57 557 57 HOH HOH . G 5 HOH A 58 558 58 HOH HOH . G 5 HOH A 59 559 59 HOH HOH . G 5 HOH A 60 560 60 HOH HOH . G 5 HOH A 61 561 61 HOH HOH . G 5 HOH A 62 562 62 HOH HOH . G 5 HOH A 63 563 63 HOH HOH . G 5 HOH A 64 564 64 HOH HOH . G 5 HOH A 65 565 65 HOH HOH . G 5 HOH A 66 566 66 HOH HOH . G 5 HOH A 67 567 67 HOH HOH . G 5 HOH A 68 568 68 HOH HOH . G 5 HOH A 69 569 69 HOH HOH . G 5 HOH A 70 570 70 HOH HOH . G 5 HOH A 71 571 71 HOH HOH . G 5 HOH A 72 572 72 HOH HOH . G 5 HOH A 73 573 73 HOH HOH . G 5 HOH A 74 574 74 HOH HOH . G 5 HOH A 75 575 75 HOH HOH . G 5 HOH A 76 576 76 HOH HOH . G 5 HOH A 77 577 77 HOH HOH . G 5 HOH A 78 578 78 HOH HOH . G 5 HOH A 79 579 79 HOH HOH . G 5 HOH A 80 580 80 HOH HOH . G 5 HOH A 81 581 81 HOH HOH . G 5 HOH A 82 582 82 HOH HOH . G 5 HOH A 83 583 83 HOH HOH . G 5 HOH A 84 584 84 HOH HOH . G 5 HOH A 85 585 85 HOH HOH . G 5 HOH A 86 586 86 HOH HOH . G 5 HOH A 87 587 87 HOH HOH . G 5 HOH A 88 588 88 HOH HOH . G 5 HOH A 89 589 89 HOH HOH . G 5 HOH A 90 590 90 HOH HOH . G 5 HOH A 91 591 91 HOH HOH . G 5 HOH A 92 592 92 HOH HOH . G 5 HOH A 93 593 93 HOH HOH . G 5 HOH A 94 594 94 HOH HOH . G 5 HOH A 95 595 95 HOH HOH . G 5 HOH A 96 596 96 HOH HOH . G 5 HOH A 97 597 97 HOH HOH . G 5 HOH A 98 598 98 HOH HOH . G 5 HOH A 99 599 99 HOH HOH . G 5 HOH A 100 600 100 HOH HOH . G 5 HOH A 101 601 101 HOH HOH . G 5 HOH A 102 602 102 HOH HOH . G 5 HOH A 103 603 103 HOH HOH . G 5 HOH A 104 604 104 HOH HOH . G 5 HOH A 105 605 105 HOH HOH . G 5 HOH A 106 606 106 HOH HOH . G 5 HOH A 107 607 107 HOH HOH . G 5 HOH A 108 608 108 HOH HOH . G 5 HOH A 109 609 109 HOH HOH . G 5 HOH A 110 610 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 44.393 3.233 6.344 1 55.9 ? C1 EDO 404 A 1 HETATM 2 O O1 EDO . . . E 4 44.825 4.471 6.86 1 47.43 ? O1 EDO 404 A 1 HETATM 3 C C2 EDO . . . E 4 43.349 3.545 5.285 1 55.07 ? C2 EDO 404 A 1 HETATM 4 O O2 EDO . . . E 4 42.377 2.519 5.329 1 60.35 ? O2 EDO 404 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #