data_4EJX # _model_server_result.job_id sLJxGb9VfL_MBBUtacUR9w _model_server_result.datetime_utc '2024-10-19 14:19:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ejx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1103}' # _entry.id 4EJX # _exptl.entry_id 4EJX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4EJX _cell.length_a 106.249 _cell.length_b 106.249 _cell.length_c 834.619 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EJX _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 C 1 NAG D 2640 NAG 4 n D NAG 2 C 2 NAG D 2641 NAG 4 n D BMA 3 C 3 BMA D 2642 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 174 A CYS 155 1_555 A SG CYS 200 A CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 276 A CYS 257 1_555 A SG CYS 357 A CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 A SG CYS 534 A CYS 515 1_555 A SG CYS 560 A CYS 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 637 A CYS 618 1_555 A SG CYS 718 A CYS 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 A SG CYS 874 A CYS 855 1_555 A SG CYS 900 A CYS 881 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 B SG CYS 3 B CYS 1 1_555 B SG CYS 16 B CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 C SG CYS 3 D CYS 115 1_555 C SG CYS 13 D CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 C SG CYS 7 D CYS 119 1_555 C SG CYS 31 D CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 C SG CYS 109 D CYS 221 1_555 C SG CYS 120 D CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? disulf ? disulf10 C SG CYS 328 D CYS 440 1_555 C SG CYS 385 D CYS 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf11 C SG CYS 426 D CYS 538 1_555 C SG CYS 452 D CYS 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 138 A ASN 119 1_555 L C1 NAG . A NAG 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale2 A ND2 ASN 397 A ASN 378 1_555 M C1 NAG . A NAG 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? covale ? covale3 C ND2 ASN 77 D ASN 189 1_555 O C1 NAG . D NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale4 C ND2 ASN 113 D ASN 225 1_555 P C1 NAG . D NAG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? covale ? covale5 C ND2 ASN 205 D ASN 317 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.535 ? covale ? covale6 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale7 D O4 NAG . C NAG 2 1_555 D C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? metalc ? metalc1 A NE2 HIS 120 A HIS 101 1_555 H CU CU . A CU 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc2 A NE2 HIS 122 A HIS 103 1_555 G CU CU . A CU 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc3 A NE2 HIS 180 A HIS 161 1_555 G CU CU . A CU 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc4 A NE2 HIS 182 A HIS 163 1_555 F CU CU . A CU 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc5 A ND1 HIS 295 A HIS 276 1_555 E CU CU . A CU 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc6 A ND1 HIS 343 A HIS 324 1_555 E CU CU . A CU 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc7 A SG CYS 699 A CYS 680 1_555 I CU CU . A CU 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc8 A ND1 HIS 704 A HIS 685 1_555 I CU CU . A CU 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc9 A NE2 HIS 959 A HIS 940 1_555 K CU CU . A CU 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc10 A ND1 HIS 994 A HIS 975 1_555 J CU CU . A CU 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc11 A NE2 HIS 997 A HIS 978 1_555 H CU CU . A CU 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc12 A NE2 HIS 999 A HIS 980 1_555 F CU CU . A CU 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc13 A NE2 HIS 1039 A HIS 1020 1_555 F CU CU . A CU 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc14 A SG CYS 1040 A CYS 1021 1_555 J CU CU . A CU 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc15 A NE2 HIS 1041 A HIS 1022 1_555 G CU CU . A CU 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc16 A SD MET 1050 A MET 1031 1_555 J CU CU . A CU 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc17 C NE2 HIS 224 D HIS 336 1_555 N FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4EJX _atom_sites.fract_transf_matrix[1][1] 0.009412 _atom_sites.fract_transf_matrix[1][2] 0.005434 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 CU A 1 1101 3046 CU CU . F 5 CU A 1 1102 3047 CU CU . G 5 CU A 1 1103 3048 CU CU . H 5 CU A 1 1104 3049 CU CU . I 5 CU A 1 1105 3051 CU CU . J 5 CU A 1 1106 3052 CU CU . K 5 CU A 1 1107 3053 CU CU . L 6 NAG A 1 1108 3055 NAG NAG . M 6 NAG A 1 1109 3056 NAG NAG . N 7 HEM D 1 601 605 HEM HEM . O 6 NAG D 1 605 2620 NAG NAG . P 6 NAG D 1 606 2630 NAG NAG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 5 _atom_site.Cartn_x -20.791 _atom_site.Cartn_y -8.232 _atom_site.Cartn_z 22.945 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 20 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 1103 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #