data_4EK4 # _model_server_result.job_id 97LPaDjeKxf4tSavzkqpeA _model_server_result.datetime_utc '2024-11-14 17:23:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ek4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 4EK4 # _exptl.entry_id 4EK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EK4 _cell.length_a 53.42 _cell.length_b 71.626 _cell.length_c 72.607 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? metalc ? metalc1 A OD2 ASP 69 A ASP 68 1_555 F NA NA . A NA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc2 A OD1 ASP 69 A ASP 68 1_555 G NA NA . A NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc3 A O VAL 70 A VAL 69 1_555 G NA NA . A NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.08 ? metalc ? metalc4 A OE2 GLU 196 A GLU 195 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc5 A OE2 GLU 209 A GLU 208 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc6 A OD2 ASP 257 A ASP 256 1_555 E NA NA . A NA 304 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc7 A OD2 ASP 257 A ASP 256 1_555 E NA NA . A NA 304 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc8 C NA NA . A NA 302 1_555 H O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.128 ? metalc ? metalc9 C NA NA . A NA 302 1_555 H O HOH . A HOH 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc10 E NA NA . A NA 304 1_555 H O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4EK4 _atom_sites.fract_transf_matrix[1][1] 0.01872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013961 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1CK A 1 301 299 1CK 1CK . C 3 NA A 1 302 300 NA NA . D 3 NA A 1 303 301 NA NA . E 3 NA A 1 304 302 NA NA . F 3 NA A 1 305 303 NA NA . G 3 NA A 1 306 304 NA NA . H 4 HOH A 1 401 305 HOH HOH . H 4 HOH A 2 402 306 HOH HOH . H 4 HOH A 3 403 307 HOH HOH . H 4 HOH A 4 404 308 HOH HOH . H 4 HOH A 5 405 309 HOH HOH . H 4 HOH A 6 406 310 HOH HOH . H 4 HOH A 7 407 311 HOH HOH . H 4 HOH A 8 408 312 HOH HOH . H 4 HOH A 9 409 313 HOH HOH . H 4 HOH A 10 410 314 HOH HOH . H 4 HOH A 11 411 315 HOH HOH . H 4 HOH A 12 412 316 HOH HOH . H 4 HOH A 13 413 318 HOH HOH . H 4 HOH A 14 414 319 HOH HOH . H 4 HOH A 15 415 320 HOH HOH . H 4 HOH A 16 416 321 HOH HOH . H 4 HOH A 17 417 322 HOH HOH . H 4 HOH A 18 418 323 HOH HOH . H 4 HOH A 19 419 324 HOH HOH . H 4 HOH A 20 420 325 HOH HOH . H 4 HOH A 21 421 326 HOH HOH . H 4 HOH A 22 422 327 HOH HOH . H 4 HOH A 23 423 328 HOH HOH . H 4 HOH A 24 424 329 HOH HOH . H 4 HOH A 25 425 330 HOH HOH . H 4 HOH A 26 426 331 HOH HOH . H 4 HOH A 27 427 332 HOH HOH . H 4 HOH A 28 428 333 HOH HOH . H 4 HOH A 29 429 334 HOH HOH . H 4 HOH A 30 430 335 HOH HOH . H 4 HOH A 31 431 336 HOH HOH . H 4 HOH A 32 432 337 HOH HOH . H 4 HOH A 33 433 338 HOH HOH . H 4 HOH A 34 434 339 HOH HOH . H 4 HOH A 35 435 340 HOH HOH . H 4 HOH A 36 436 341 HOH HOH . H 4 HOH A 37 437 342 HOH HOH . H 4 HOH A 38 438 343 HOH HOH . H 4 HOH A 39 439 344 HOH HOH . H 4 HOH A 40 440 345 HOH HOH . H 4 HOH A 41 441 346 HOH HOH . H 4 HOH A 42 442 347 HOH HOH . H 4 HOH A 43 443 348 HOH HOH . H 4 HOH A 44 444 349 HOH HOH . H 4 HOH A 45 445 350 HOH HOH . H 4 HOH A 46 446 351 HOH HOH . H 4 HOH A 47 447 352 HOH HOH . H 4 HOH A 48 448 353 HOH HOH . H 4 HOH A 49 449 354 HOH HOH . H 4 HOH A 50 450 355 HOH HOH . H 4 HOH A 51 451 356 HOH HOH . H 4 HOH A 52 452 357 HOH HOH . H 4 HOH A 53 453 358 HOH HOH . H 4 HOH A 54 454 359 HOH HOH . H 4 HOH A 55 455 360 HOH HOH . H 4 HOH A 56 456 361 HOH HOH . H 4 HOH A 57 457 362 HOH HOH . H 4 HOH A 58 458 363 HOH HOH . H 4 HOH A 59 459 364 HOH HOH . H 4 HOH A 60 460 365 HOH HOH . H 4 HOH A 61 461 366 HOH HOH . H 4 HOH A 62 462 367 HOH HOH . H 4 HOH A 63 463 368 HOH HOH . H 4 HOH A 64 464 369 HOH HOH . H 4 HOH A 65 465 370 HOH HOH . H 4 HOH A 66 466 371 HOH HOH . H 4 HOH A 67 467 372 HOH HOH . H 4 HOH A 68 468 373 HOH HOH . H 4 HOH A 69 469 374 HOH HOH . H 4 HOH A 70 470 375 HOH HOH . H 4 HOH A 71 471 376 HOH HOH . H 4 HOH A 72 472 377 HOH HOH . H 4 HOH A 73 473 378 HOH HOH . H 4 HOH A 74 474 379 HOH HOH . H 4 HOH A 75 475 380 HOH HOH . H 4 HOH A 76 476 381 HOH HOH . H 4 HOH A 77 477 382 HOH HOH . H 4 HOH A 78 478 383 HOH HOH . H 4 HOH A 79 479 384 HOH HOH . H 4 HOH A 80 480 385 HOH HOH . H 4 HOH A 81 481 386 HOH HOH . H 4 HOH A 82 482 387 HOH HOH . H 4 HOH A 83 483 388 HOH HOH . H 4 HOH A 84 484 389 HOH HOH . H 4 HOH A 85 485 390 HOH HOH . H 4 HOH A 86 486 391 HOH HOH . H 4 HOH A 87 487 392 HOH HOH . H 4 HOH A 88 488 393 HOH HOH . H 4 HOH A 89 489 394 HOH HOH . H 4 HOH A 90 490 395 HOH HOH . H 4 HOH A 91 491 396 HOH HOH . H 4 HOH A 92 492 397 HOH HOH . H 4 HOH A 93 493 398 HOH HOH . H 4 HOH A 94 494 399 HOH HOH . H 4 HOH A 95 495 400 HOH HOH . H 4 HOH A 96 496 401 HOH HOH . H 4 HOH A 97 497 402 HOH HOH . H 4 HOH A 98 498 403 HOH HOH . H 4 HOH A 99 499 404 HOH HOH . H 4 HOH A 100 500 405 HOH HOH . H 4 HOH A 101 501 406 HOH HOH . H 4 HOH A 102 502 407 HOH HOH . H 4 HOH A 103 503 408 HOH HOH . H 4 HOH A 104 504 409 HOH HOH . H 4 HOH A 105 505 410 HOH HOH . H 4 HOH A 106 506 411 HOH HOH . H 4 HOH A 107 507 412 HOH HOH . H 4 HOH A 108 508 413 HOH HOH . H 4 HOH A 109 509 414 HOH HOH . H 4 HOH A 110 510 415 HOH HOH . H 4 HOH A 111 511 416 HOH HOH . H 4 HOH A 112 512 417 HOH HOH . H 4 HOH A 113 513 418 HOH HOH . H 4 HOH A 114 514 419 HOH HOH . H 4 HOH A 115 515 420 HOH HOH . H 4 HOH A 116 516 421 HOH HOH . H 4 HOH A 117 517 422 HOH HOH . H 4 HOH A 118 518 423 HOH HOH . H 4 HOH A 119 519 424 HOH HOH . H 4 HOH A 120 520 425 HOH HOH . H 4 HOH A 121 521 426 HOH HOH . H 4 HOH A 122 522 427 HOH HOH . H 4 HOH A 123 523 428 HOH HOH . H 4 HOH A 124 524 429 HOH HOH . H 4 HOH A 125 525 430 HOH HOH . H 4 HOH A 126 526 431 HOH HOH . H 4 HOH A 127 527 432 HOH HOH . H 4 HOH A 128 528 433 HOH HOH . H 4 HOH A 129 529 434 HOH HOH . H 4 HOH A 130 530 435 HOH HOH . H 4 HOH A 131 531 436 HOH HOH . H 4 HOH A 132 532 437 HOH HOH . H 4 HOH A 133 533 438 HOH HOH . H 4 HOH A 134 534 439 HOH HOH . H 4 HOH A 135 535 440 HOH HOH . H 4 HOH A 136 536 441 HOH HOH . H 4 HOH A 137 537 442 HOH HOH . H 4 HOH A 138 538 443 HOH HOH . H 4 HOH A 139 539 444 HOH HOH . H 4 HOH A 140 540 445 HOH HOH . H 4 HOH A 141 541 446 HOH HOH . H 4 HOH A 142 542 447 HOH HOH . H 4 HOH A 143 543 448 HOH HOH . H 4 HOH A 144 544 449 HOH HOH . H 4 HOH A 145 545 450 HOH HOH . H 4 HOH A 146 546 451 HOH HOH . H 4 HOH A 147 547 452 HOH HOH . H 4 HOH A 148 548 453 HOH HOH . H 4 HOH A 149 549 454 HOH HOH . H 4 HOH A 150 550 455 HOH HOH . H 4 HOH A 151 551 456 HOH HOH . H 4 HOH A 152 552 457 HOH HOH . H 4 HOH A 153 553 458 HOH HOH . H 4 HOH A 154 554 459 HOH HOH . H 4 HOH A 155 555 460 HOH HOH . H 4 HOH A 156 556 461 HOH HOH . H 4 HOH A 157 557 462 HOH HOH . H 4 HOH A 158 558 463 HOH HOH . H 4 HOH A 159 559 464 HOH HOH . H 4 HOH A 160 560 465 HOH HOH . H 4 HOH A 161 561 466 HOH HOH . H 4 HOH A 162 562 467 HOH HOH . H 4 HOH A 163 563 468 HOH HOH . H 4 HOH A 164 564 469 HOH HOH . H 4 HOH A 165 565 470 HOH HOH . H 4 HOH A 166 566 471 HOH HOH . H 4 HOH A 167 567 472 HOH HOH . H 4 HOH A 168 568 473 HOH HOH . H 4 HOH A 169 569 474 HOH HOH . H 4 HOH A 170 570 475 HOH HOH . H 4 HOH A 171 571 476 HOH HOH . H 4 HOH A 172 572 477 HOH HOH . H 4 HOH A 173 573 478 HOH HOH . H 4 HOH A 174 574 479 HOH HOH . H 4 HOH A 175 575 480 HOH HOH . H 4 HOH A 176 576 481 HOH HOH . H 4 HOH A 177 577 482 HOH HOH . H 4 HOH A 178 578 483 HOH HOH . H 4 HOH A 179 579 484 HOH HOH . H 4 HOH A 180 580 485 HOH HOH . H 4 HOH A 181 581 486 HOH HOH . H 4 HOH A 182 582 487 HOH HOH . H 4 HOH A 183 583 488 HOH HOH . H 4 HOH A 184 584 489 HOH HOH . H 4 HOH A 185 585 490 HOH HOH . H 4 HOH A 186 586 491 HOH HOH . H 4 HOH A 187 587 492 HOH HOH . H 4 HOH A 188 588 493 HOH HOH . H 4 HOH A 189 589 494 HOH HOH . H 4 HOH A 190 590 495 HOH HOH . H 4 HOH A 191 591 496 HOH HOH . H 4 HOH A 192 592 497 HOH HOH . H 4 HOH A 193 593 498 HOH HOH . H 4 HOH A 194 594 499 HOH HOH . H 4 HOH A 195 595 500 HOH HOH . H 4 HOH A 196 596 501 HOH HOH . H 4 HOH A 197 597 502 HOH HOH . H 4 HOH A 198 598 503 HOH HOH . H 4 HOH A 199 599 504 HOH HOH . H 4 HOH A 200 600 505 HOH HOH . H 4 HOH A 201 601 506 HOH HOH . H 4 HOH A 202 602 507 HOH HOH . H 4 HOH A 203 603 508 HOH HOH . H 4 HOH A 204 604 509 HOH HOH . H 4 HOH A 205 605 510 HOH HOH . H 4 HOH A 206 606 511 HOH HOH . H 4 HOH A 207 607 512 HOH HOH . H 4 HOH A 208 608 513 HOH HOH . H 4 HOH A 209 609 514 HOH HOH . H 4 HOH A 210 610 515 HOH HOH . H 4 HOH A 211 611 516 HOH HOH . H 4 HOH A 212 612 517 HOH HOH . H 4 HOH A 213 613 518 HOH HOH . H 4 HOH A 214 614 519 HOH HOH . H 4 HOH A 215 615 520 HOH HOH . H 4 HOH A 216 616 521 HOH HOH . H 4 HOH A 217 617 522 HOH HOH . H 4 HOH A 218 618 523 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 13.183 _atom_site.Cartn_y 4.613 _atom_site.Cartn_z 31.244 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 57.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 306 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #