data_4EK8 # _model_server_result.job_id 60qPWxiwfG-tYtDUxp6kLg _model_server_result.datetime_utc '2024-11-17 19:34:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ek8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4EK8 # _exptl.entry_id 4EK8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 327.361 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(2,4-dimethyl-1,3-thiazol-5-yl)-N-(3-nitrophenyl)pyrimidin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EK8 _cell.length_a 53.42 _cell.length_b 71.879 _cell.length_c 72.417 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EK8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id ACE _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ACE _struct_conn.ptnr1_auth_seq_id 0 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id MET _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MET _struct_conn.ptnr2_auth_seq_id 1 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.335 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C15 H13 N5 O2 S' _chem_comp.formula_weight 327.361 _chem_comp.id 16K _chem_comp.mon_nstd_flag . _chem_comp.name 4-(2,4-dimethyl-1,3-thiazol-5-yl)-N-(3-nitrophenyl)pyrimidin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S C13 16K sing 1 n y C1 S 16K sing 2 n y C1 C12 16K doub 3 n y N1 C2 16K sing 4 n y C2 C1 16K sing 5 n y N2 C3 16K sing 6 n y N2 C4 16K doub 7 n y C3 N1 16K doub 8 n y N3 C3 16K sing 9 n n N3 C6 16K sing 10 n n N3 HN3 16K sing 11 n n C4 C5 16K sing 12 n y C4 H4 16K sing 13 n n N4 O1 16K doub 14 n n N4 O2 16K sing 15 n n C5 C2 16K doub 16 n y C5 H5 16K sing 17 n n N5 C13 16K doub 18 n y C6 C7 16K sing 19 n y C7 C8 16K doub 20 n y C7 H7 16K sing 21 n n C8 N4 16K sing 22 n n C9 C8 16K sing 23 n y C9 H9 16K sing 24 n n C10 C9 16K doub 25 n y C10 H10 16K sing 26 n n C11 C6 16K doub 27 n y C11 C10 16K sing 28 n y C11 H11 16K sing 29 n n C12 N5 16K sing 30 n y C13 C14 16K sing 31 n n C14 H14 16K sing 32 n n C14 H14A 16K sing 33 n n C14 H14B 16K sing 34 n n C15 C12 16K sing 35 n n C15 H15 16K sing 36 n n C15 H15A 16K sing 37 n n C15 H15B 16K sing 38 n n # _atom_sites.entry_id 4EK8 _atom_sites.fract_transf_matrix[1][1] 0.01872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 16K A 1 301 299 16K 16K . C 3 HOH A 1 401 300 HOH HOH . C 3 HOH A 2 402 301 HOH HOH . C 3 HOH A 3 403 302 HOH HOH . C 3 HOH A 4 404 303 HOH HOH . C 3 HOH A 5 405 304 HOH HOH . C 3 HOH A 6 406 305 HOH HOH . C 3 HOH A 7 407 306 HOH HOH . C 3 HOH A 8 408 307 HOH HOH . C 3 HOH A 9 409 308 HOH HOH . C 3 HOH A 10 410 309 HOH HOH . C 3 HOH A 11 411 310 HOH HOH . C 3 HOH A 12 412 311 HOH HOH . C 3 HOH A 13 413 312 HOH HOH . C 3 HOH A 14 414 313 HOH HOH . C 3 HOH A 15 415 314 HOH HOH . C 3 HOH A 16 416 315 HOH HOH . C 3 HOH A 17 417 316 HOH HOH . C 3 HOH A 18 418 317 HOH HOH . C 3 HOH A 19 419 318 HOH HOH . C 3 HOH A 20 420 319 HOH HOH . C 3 HOH A 21 421 320 HOH HOH . C 3 HOH A 22 422 321 HOH HOH . C 3 HOH A 23 423 322 HOH HOH . C 3 HOH A 24 424 323 HOH HOH . C 3 HOH A 25 425 324 HOH HOH . C 3 HOH A 26 426 325 HOH HOH . C 3 HOH A 27 427 326 HOH HOH . C 3 HOH A 28 428 327 HOH HOH . C 3 HOH A 29 429 328 HOH HOH . C 3 HOH A 30 430 329 HOH HOH . C 3 HOH A 31 431 330 HOH HOH . C 3 HOH A 32 432 331 HOH HOH . C 3 HOH A 33 433 332 HOH HOH . C 3 HOH A 34 434 333 HOH HOH . C 3 HOH A 35 435 334 HOH HOH . C 3 HOH A 36 436 335 HOH HOH . C 3 HOH A 37 437 336 HOH HOH . C 3 HOH A 38 438 337 HOH HOH . C 3 HOH A 39 439 338 HOH HOH . C 3 HOH A 40 440 339 HOH HOH . C 3 HOH A 41 441 340 HOH HOH . C 3 HOH A 42 442 341 HOH HOH . C 3 HOH A 43 443 342 HOH HOH . C 3 HOH A 44 444 343 HOH HOH . C 3 HOH A 45 445 344 HOH HOH . C 3 HOH A 46 446 345 HOH HOH . C 3 HOH A 47 447 346 HOH HOH . C 3 HOH A 48 448 347 HOH HOH . C 3 HOH A 49 449 348 HOH HOH . C 3 HOH A 50 450 349 HOH HOH . C 3 HOH A 51 451 350 HOH HOH . C 3 HOH A 52 452 351 HOH HOH . C 3 HOH A 53 453 352 HOH HOH . C 3 HOH A 54 454 353 HOH HOH . C 3 HOH A 55 455 354 HOH HOH . C 3 HOH A 56 456 355 HOH HOH . C 3 HOH A 57 457 356 HOH HOH . C 3 HOH A 58 458 357 HOH HOH . C 3 HOH A 59 459 358 HOH HOH . C 3 HOH A 60 460 359 HOH HOH . C 3 HOH A 61 461 360 HOH HOH . C 3 HOH A 62 462 361 HOH HOH . C 3 HOH A 63 463 362 HOH HOH . C 3 HOH A 64 464 363 HOH HOH . C 3 HOH A 65 465 364 HOH HOH . C 3 HOH A 66 466 365 HOH HOH . C 3 HOH A 67 467 366 HOH HOH . C 3 HOH A 68 468 367 HOH HOH . C 3 HOH A 69 469 368 HOH HOH . C 3 HOH A 70 470 369 HOH HOH . C 3 HOH A 71 471 370 HOH HOH . C 3 HOH A 72 472 371 HOH HOH . C 3 HOH A 73 473 372 HOH HOH . C 3 HOH A 74 474 373 HOH HOH . C 3 HOH A 75 475 374 HOH HOH . C 3 HOH A 76 476 375 HOH HOH . C 3 HOH A 77 477 376 HOH HOH . C 3 HOH A 78 478 377 HOH HOH . C 3 HOH A 79 479 378 HOH HOH . C 3 HOH A 80 480 379 HOH HOH . C 3 HOH A 81 481 380 HOH HOH . C 3 HOH A 82 482 381 HOH HOH . C 3 HOH A 83 483 382 HOH HOH . C 3 HOH A 84 484 383 HOH HOH . C 3 HOH A 85 485 384 HOH HOH . C 3 HOH A 86 486 385 HOH HOH . C 3 HOH A 87 487 386 HOH HOH . C 3 HOH A 88 488 387 HOH HOH . C 3 HOH A 89 489 388 HOH HOH . C 3 HOH A 90 490 389 HOH HOH . C 3 HOH A 91 491 390 HOH HOH . C 3 HOH A 92 492 391 HOH HOH . C 3 HOH A 93 493 392 HOH HOH . C 3 HOH A 94 494 393 HOH HOH . C 3 HOH A 95 495 394 HOH HOH . C 3 HOH A 96 496 395 HOH HOH . C 3 HOH A 97 497 396 HOH HOH . C 3 HOH A 98 498 397 HOH HOH . C 3 HOH A 99 499 398 HOH HOH . C 3 HOH A 100 500 399 HOH HOH . C 3 HOH A 101 501 400 HOH HOH . C 3 HOH A 102 502 401 HOH HOH . C 3 HOH A 103 503 402 HOH HOH . C 3 HOH A 104 504 403 HOH HOH . C 3 HOH A 105 505 404 HOH HOH . C 3 HOH A 106 506 405 HOH HOH . C 3 HOH A 107 507 406 HOH HOH . C 3 HOH A 108 508 407 HOH HOH . C 3 HOH A 109 509 408 HOH HOH . C 3 HOH A 110 510 409 HOH HOH . C 3 HOH A 111 511 410 HOH HOH . C 3 HOH A 112 512 411 HOH HOH . C 3 HOH A 113 513 412 HOH HOH . C 3 HOH A 114 514 413 HOH HOH . C 3 HOH A 115 515 414 HOH HOH . C 3 HOH A 116 516 415 HOH HOH . C 3 HOH A 117 517 416 HOH HOH . C 3 HOH A 118 518 417 HOH HOH . C 3 HOH A 119 519 418 HOH HOH . C 3 HOH A 120 520 419 HOH HOH . C 3 HOH A 121 521 420 HOH HOH . C 3 HOH A 122 522 421 HOH HOH . C 3 HOH A 123 523 422 HOH HOH . C 3 HOH A 124 524 423 HOH HOH . C 3 HOH A 125 525 424 HOH HOH . C 3 HOH A 126 526 425 HOH HOH . C 3 HOH A 127 527 426 HOH HOH . C 3 HOH A 128 528 427 HOH HOH . C 3 HOH A 129 529 428 HOH HOH . C 3 HOH A 130 530 429 HOH HOH . C 3 HOH A 131 531 430 HOH HOH . C 3 HOH A 132 532 431 HOH HOH . C 3 HOH A 133 533 432 HOH HOH . C 3 HOH A 134 534 433 HOH HOH . C 3 HOH A 135 535 434 HOH HOH . C 3 HOH A 136 536 435 HOH HOH . C 3 HOH A 137 537 436 HOH HOH . C 3 HOH A 138 538 437 HOH HOH . C 3 HOH A 139 539 438 HOH HOH . C 3 HOH A 140 540 439 HOH HOH . C 3 HOH A 141 541 440 HOH HOH . C 3 HOH A 142 542 441 HOH HOH . C 3 HOH A 143 543 442 HOH HOH . C 3 HOH A 144 544 443 HOH HOH . C 3 HOH A 145 545 444 HOH HOH . C 3 HOH A 146 546 445 HOH HOH . C 3 HOH A 147 547 446 HOH HOH . C 3 HOH A 148 548 447 HOH HOH . C 3 HOH A 149 549 448 HOH HOH . C 3 HOH A 150 550 449 HOH HOH . C 3 HOH A 151 551 450 HOH HOH . C 3 HOH A 152 552 451 HOH HOH . C 3 HOH A 153 553 452 HOH HOH . C 3 HOH A 154 554 453 HOH HOH . C 3 HOH A 155 555 454 HOH HOH . C 3 HOH A 156 556 455 HOH HOH . C 3 HOH A 157 557 456 HOH HOH . C 3 HOH A 158 558 457 HOH HOH . C 3 HOH A 159 559 458 HOH HOH . C 3 HOH A 160 560 459 HOH HOH . C 3 HOH A 161 561 460 HOH HOH . C 3 HOH A 162 562 461 HOH HOH . C 3 HOH A 163 563 462 HOH HOH . C 3 HOH A 164 564 463 HOH HOH . C 3 HOH A 165 565 464 HOH HOH . C 3 HOH A 166 566 465 HOH HOH . C 3 HOH A 167 567 466 HOH HOH . C 3 HOH A 168 568 467 HOH HOH . C 3 HOH A 169 569 468 HOH HOH . C 3 HOH A 170 570 469 HOH HOH . C 3 HOH A 171 571 470 HOH HOH . C 3 HOH A 172 572 471 HOH HOH . C 3 HOH A 173 573 472 HOH HOH . C 3 HOH A 174 574 473 HOH HOH . C 3 HOH A 175 575 474 HOH HOH . C 3 HOH A 176 576 475 HOH HOH . C 3 HOH A 177 577 476 HOH HOH . C 3 HOH A 178 578 477 HOH HOH . C 3 HOH A 179 579 478 HOH HOH . C 3 HOH A 180 580 479 HOH HOH . C 3 HOH A 181 581 480 HOH HOH . C 3 HOH A 182 582 481 HOH HOH . C 3 HOH A 183 583 482 HOH HOH . C 3 HOH A 184 584 483 HOH HOH . C 3 HOH A 185 585 484 HOH HOH . C 3 HOH A 186 586 485 HOH HOH . C 3 HOH A 187 587 486 HOH HOH . C 3 HOH A 188 588 487 HOH HOH . C 3 HOH A 189 589 488 HOH HOH . C 3 HOH A 190 590 489 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S 16K . . . B 2 0.039 -7.327 -25.438 1 30.91 ? S 16K 301 A 1 HETATM 2 C C1 16K . . . B 2 -0.673 -5.903 -26.116 1 26.8 ? C1 16K 301 A 1 HETATM 3 N N1 16K . . . B 2 1.14 -5.917 -27.626 1 22.5 ? N1 16K 301 A 1 HETATM 4 O O1 16K . A . B 2 1.045 -10.391 -27.398 0.51 35.99 ? O1 16K 301 A 1 HETATM 5 O O1 16K . B . B 2 6.061 -8.821 -32.162 0.49 35.57 ? O1 16K 301 A 1 HETATM 6 C C2 16K . . . B 2 0.155 -5.135 -27.038 1 24.5 ? C2 16K 301 A 1 HETATM 7 N N2 16K . . . B 2 1.854 -3.964 -28.946 1 23.68 ? N2 16K 301 A 1 HETATM 8 O O2 16K . A . B 2 2.756 -11.561 -26.95 0.51 40.36 ? O2 16K 301 A 1 HETATM 9 O O2 16K . B . B 2 7.131 -10.058 -30.791 0.49 35.23 ? O2 16K 301 A 1 HETATM 10 C C3 16K . . . B 2 1.968 -5.307 -28.56 1 26.24 ? C3 16K 301 A 1 HETATM 11 N N3 16K . . . B 2 3.052 -5.957 -29.174 1 26.61 ? N3 16K 301 A 1 HETATM 12 C C4 16K . . . B 2 0.858 -3.242 -28.346 1 21.79 ? C4 16K 301 A 1 HETATM 13 N N4 16K . A . B 2 2.24 -10.593 -27.465 0.51 37.63 ? N4 16K 301 A 1 HETATM 14 N N4 16K . B . B 2 6.217 -9.291 -31.046 0.49 33.82 ? N4 16K 301 A 1 HETATM 15 C C5 16K . . . B 2 -0.032 -3.782 -27.376 1 23.57 ? C5 16K 301 A 1 HETATM 16 N N5 16K . . . B 2 -2.302 -6.609 -24.591 1 29.65 ? N5 16K 301 A 1 HETATM 17 C C6 16K . A . B 2 3.449 -7.308 -28.975 0.51 29.91 ? C6 16K 301 A 1 HETATM 18 C C6 16K . B . B 2 3.671 -7.232 -29.098 0.49 28.85 ? C6 16K 301 A 1 HETATM 19 C C7 16K . A . B 2 2.685 -8.264 -28.24 0.51 33 ? C7 16K 301 A 1 HETATM 20 C C7 16K . B . B 2 4.573 -7.65 -30.106 0.49 29.95 ? C7 16K 301 A 1 HETATM 21 C C8 16K . A . B 2 3.1 -9.6 -28.21 0.51 35.17 ? C8 16K 301 A 1 HETATM 22 C C8 16K . B . B 2 5.259 -8.87 -29.953 0.49 32.34 ? C8 16K 301 A 1 HETATM 23 C C9 16K . A . B 2 4.269 -10.035 -28.869 0.51 33.96 ? C9 16K 301 A 1 HETATM 24 C C9 16K . B . B 2 5.073 -9.699 -28.819 0.49 32.71 ? C9 16K 301 A 1 HETATM 25 C C10 16K . A . B 2 5.042 -9.075 -29.576 0.51 33.34 ? C10 16K 301 A 1 HETATM 26 C C10 16K . B . B 2 4.157 -9.285 -27.824 0.49 32.33 ? C10 16K 301 A 1 HETATM 27 C C11 16K . A . B 2 4.648 -7.728 -29.636 0.51 31.31 ? C11 16K 301 A 1 HETATM 28 C C11 16K . B . B 2 3.458 -8.074 -27.955 0.49 30.58 ? C11 16K 301 A 1 HETATM 29 C C12 16K . . . B 2 -1.914 -5.663 -25.544 1 30.94 ? C12 16K 301 A 1 HETATM 30 C C13 16K . . . B 2 -1.343 -7.52 -24.456 1 30.9 ? C13 16K 301 A 1 HETATM 31 C C14 16K . . . B 2 -1.437 -8.647 -23.485 1 33.83 ? C14 16K 301 A 1 HETATM 32 C C15 16K . . . B 2 -2.882 -4.559 -25.731 1 33.82 ? C15 16K 301 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #