data_4EKD
#
_model_server_result.job_id            IEc7r5RuT0MWqH7VesHL4A 
_model_server_result.datetime_utc      '2025-01-02 16:52:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ekd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":301}' 
#
_entry.id    4EKD 
#
_exptl.entry_id    4EKD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              195.237 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4EKD 
_cell.length_a            60.248 
_cell.length_b            60.248 
_cell.length_c            345.569 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4EKD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 41 A SER 53 1_555 I MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc2 A NE2 HIS 93 A HIS 105 1_555 E CO CO . A CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? 
metalc ? metalc3 A NE2 HIS 97 A HIS 109 1_555 E CO CO . A CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc4 A OG1 THR 174 A THR 186 1_555 I MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc5 A OD1 ASP 307 A ASP 319 1_555 H CO CO . A CO 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc6 A OD1 ASP 309 A ASP 321 1_555 H CO CO . A CO 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc7 C O2B GDP . A GDP 401 1_555 I MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc8 C O3B GDP . A GDP 401 1_555 I MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? 
metalc ? metalc9 I MG MG . A MG 407 1_555 K O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.796 ? 
metalc ? metalc10 I MG MG . A MG 407 1_555 K O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? 
#
_chem_comp.formula           'C6 H13 N O4 S' 
_chem_comp.formula_weight    195.237 
_chem_comp.id                MES 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 MES sing 267 n n 
O1 C6 MES sing 268 n n 
C2 C3 MES sing 269 n n 
C2 H21 MES sing 270 n n 
C2 H22 MES sing 271 n n 
C3 N4 MES sing 272 n n 
C3 H31 MES sing 273 n n 
C3 H32 MES sing 274 n n 
N4 C5 MES sing 275 n n 
N4 C7 MES sing 276 n n 
N4 HN4 MES sing 277 n n 
C5 C6 MES sing 278 n n 
C5 H51 MES sing 279 n n 
C5 H52 MES sing 280 n n 
C6 H61 MES sing 281 n n 
C6 H62 MES sing 282 n n 
C7 C8 MES sing 283 n n 
C7 H71 MES sing 284 n n 
C7 H72 MES sing 285 n n 
C8 S MES sing 286 n n 
C8 H81 MES sing 287 n n 
C8 H82 MES sing 288 n n 
S O1S MES doub 289 n n 
S O2S MES doub 290 n n 
S O3S MES sing 291 n n 
#
_atom_sites.entry_id                     4EKD 
_atom_sites.fract_transf_matrix[1][1]    0.016598 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016598 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002894 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GDP A 1 401 400 GDP GDP . 
D 4 ALF A 1 402 401 ALF ALF . 
E 5 CO A 1 403 500 CO CO . 
F 6 CL A 1 404 501 CL CL . 
G 6 CL A 1 405 502 CL CL . 
H 5 CO A 1 406 600 CO CO . 
I 7 MG A 1 407 402 MG MG . 
J 8 MES B 1 301 1 MES MES . 
K 9 HOH A 1 501 403 HOH HOH . 
K 9 HOH A 2 502 404 HOH HOH . 
K 9 HOH A 3 503 405 HOH HOH . 
K 9 HOH A 4 504 1 HOH HOH . 
K 9 HOH A 5 505 2 HOH HOH . 
K 9 HOH A 6 506 3 HOH HOH . 
K 9 HOH A 7 507 4 HOH HOH . 
K 9 HOH A 8 508 7 HOH HOH . 
K 9 HOH A 9 509 8 HOH HOH . 
K 9 HOH A 10 510 9 HOH HOH . 
K 9 HOH A 11 511 10 HOH HOH . 
K 9 HOH A 12 512 11 HOH HOH . 
K 9 HOH A 13 513 12 HOH HOH . 
K 9 HOH A 14 514 13 HOH HOH . 
K 9 HOH A 15 515 14 HOH HOH . 
L 9 HOH B 1 401 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 MES . . . J 8 -51.971 23.03 -31.894 1 160.39 ? O1 MES 301 B 1 
HETATM 2 C C2 MES . . . J 8 -52.883 23.124 -32.995 1 166.95 ? C2 MES 301 B 1 
HETATM 3 C C3 MES . . . J 8 -53.574 21.785 -33.243 1 167.77 ? C3 MES 301 B 1 
HETATM 4 N N4 MES . . . J 8 -52.569 20.716 -33.421 1 169.97 ? N4 MES 301 B 1 
HETATM 5 C C5 MES . . . J 8 -51.621 20.688 -32.285 1 162.62 ? C5 MES 301 B 1 
HETATM 6 C C6 MES . . . J 8 -50.959 22.05 -32.107 1 158.29 ? C6 MES 301 B 1 
HETATM 7 C C7 MES . . . J 8 -53.248 19.404 -33.529 1 173.22 ? C7 MES 301 B 1 
HETATM 8 C C8 MES . . . J 8 -53.475 19.02 -34.993 1 176.72 ? C8 MES 301 B 1 
HETATM 9 S S MES . . . J 8 -53.233 17.391 -35.245 1 178.14 ? S MES 301 B 1 
HETATM 10 O O1S MES . . . J 8 -52.117 16.876 -34.414 1 172.56 ? O1S MES 301 B 1 
HETATM 11 O O2S MES . . . J 8 -52.886 17.173 -36.669 1 180.56 ? O2S MES 301 B 1 
HETATM 12 O O3S MES . . . J 8 -54.495 16.684 -34.919 1 166.86 ? O3S MES 301 B 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           12 
#