data_4EKI # _model_server_result.job_id MRHjAwBQadygCfT3CfYRVQ _model_server_result.datetime_utc '2024-11-25 11:35:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4EKI # _exptl.entry_id 4EKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.67 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-{5-[(3-{[(4-tert-butylphenyl)carbamoyl]amino}propyl)(propan-2-yl)amino]-5-deoxy-beta-D-ribofuranosyl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4EKI _cell.length_a 155.053 _cell.length_b 155.053 _cell.length_c 48.452 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H41 N7 O4' _chem_comp.formula_weight 539.67 _chem_comp.id 0QK _chem_comp.mon_nstd_flag . _chem_comp.name 7-{5-[(3-{[(4-tert-butylphenyl)carbamoyl]amino}propyl)(propan-2-yl)amino]-5-deoxy-beta-D-ribofuranosyl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBI CBH 0QK sing 1 n n CBK CBH 0QK sing 2 n n CBH CBJ 0QK sing 3 n n CBH CBE 0QK sing 4 n n CBE CBF 0QK doub 5 n y CBE CBD 0QK sing 6 n y CBF CBG 0QK sing 7 n y CBD CBC 0QK doub 8 n y CBG CBB 0QK doub 9 n y CBC CBB 0QK sing 10 n y CBB NAZ 0QK sing 11 n n NAZ CAY 0QK sing 12 n n CAY OBA 0QK doub 13 n n CAY NAX 0QK sing 14 n n NAX CAW 0QK sing 15 n n CAW CAV 0QK sing 16 n n CAV CAT 0QK sing 17 n n CAU CBM 0QK sing 18 n n CAU CBL 0QK sing 19 n n CAU NAS 0QK sing 20 n n CAT NAS 0QK sing 21 n n NAS CAR 0QK sing 22 n n CAR CAN 0QK sing 23 n n OAO CAN 0QK sing 24 n n OAO CAK 0QK sing 25 n n CAN CAM 0QK sing 26 n n CAK NAG 0QK sing 27 n n CAK CAL 0QK sing 28 n n NAG CAH 0QK sing 29 n y NAG C4 0QK sing 30 n y CAM OAQ 0QK sing 31 n n CAM CAL 0QK sing 32 n n CAH CAI 0QK doub 33 n y N3 C4 0QK doub 34 n y N3 C2 0QK sing 35 n y C4 C5 0QK sing 36 n y C2 N1 0QK doub 37 n y CAI C5 0QK sing 38 n y C5 C6 0QK doub 39 n y N1 C6 0QK sing 40 n y C6 NAJ 0QK sing 41 n n CAL OAP 0QK sing 42 n n C2 H1 0QK sing 43 n n CBI H2 0QK sing 44 n n CBI H3 0QK sing 45 n n CBI H4 0QK sing 46 n n CBJ H5 0QK sing 47 n n CBJ H6 0QK sing 48 n n CBJ H7 0QK sing 49 n n CBK H8 0QK sing 50 n n CBK H9 0QK sing 51 n n CBK H10 0QK sing 52 n n CBF H11 0QK sing 53 n n CBG H12 0QK sing 54 n n CBD H13 0QK sing 55 n n CBC H14 0QK sing 56 n n NAZ H15 0QK sing 57 n n NAX H16 0QK sing 58 n n CAW H17 0QK sing 59 n n CAW H18 0QK sing 60 n n CAV H19 0QK sing 61 n n CAV H20 0QK sing 62 n n CAT H21 0QK sing 63 n n CAT H22 0QK sing 64 n n CAU H24 0QK sing 65 n n CBM H25 0QK sing 66 n n CBM H26 0QK sing 67 n n CBM H27 0QK sing 68 n n CBL H28 0QK sing 69 n n CBL H29 0QK sing 70 n n CBL H30 0QK sing 71 n n CAR H31 0QK sing 72 n n CAR H32 0QK sing 73 n n CAN H33 0QK sing 74 n n CAM H34 0QK sing 75 n n OAQ H35 0QK sing 76 n n CAL H36 0QK sing 77 n n OAP H37 0QK sing 78 n n CAK H38 0QK sing 79 n n CAH H39 0QK sing 80 n n CAI H40 0QK sing 81 n n NAJ H41 0QK sing 82 n n NAJ H42 0QK sing 83 n n # _atom_sites.entry_id 4EKI _atom_sites.fract_transf_matrix[1][1] 0.006449 _atom_sites.fract_transf_matrix[1][2] 0.003724 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007447 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020639 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0QK A 1 501 500 0QK 0QK . C 3 SO4 A 1 502 1 SO4 SO4 . D 3 SO4 A 1 503 2 SO4 SO4 . E 3 SO4 A 1 504 3 SO4 SO4 . F 4 HOH A 1 601 1 HOH HOH . F 4 HOH A 2 602 2 HOH HOH . F 4 HOH A 3 603 3 HOH HOH . F 4 HOH A 4 604 4 HOH HOH . F 4 HOH A 5 605 5 HOH HOH . F 4 HOH A 6 606 6 HOH HOH . F 4 HOH A 7 607 7 HOH HOH . F 4 HOH A 8 608 8 HOH HOH . F 4 HOH A 9 609 9 HOH HOH . F 4 HOH A 10 610 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 0QK . . . B 2 43.267 45.305 13.198 1 83.36 ? C2 0QK 501 A 1 HETATM 2 C C4 0QK . . . B 2 44.663 47.218 13.113 1 83.08 ? C4 0QK 501 A 1 HETATM 3 C C5 0QK . . . B 2 45.752 46.461 13.245 1 81.52 ? C5 0QK 501 A 1 HETATM 4 C C6 0QK . . . B 2 45.621 45.13 13.364 1 85.38 ? C6 0QK 501 A 1 HETATM 5 C CBI 0QK . . . B 2 46.059 53.92 -1.025 1 71.41 ? CBI 0QK 501 A 1 HETATM 6 C CBH 0QK . . . B 2 46.534 52.809 -0.099 1 69.19 ? CBH 0QK 501 A 1 HETATM 7 C CBJ 0QK . . . B 2 47.867 53.233 0.529 1 74.95 ? CBJ 0QK 501 A 1 HETATM 8 C CBK 0QK . . . B 2 46.726 51.592 -0.999 1 65.05 ? CBK 0QK 501 A 1 HETATM 9 C CBE 0QK . . . B 2 45.595 52.578 0.943 1 69.4 ? CBE 0QK 501 A 1 HETATM 10 C CBF 0QK . . . B 2 45.385 51.301 1.487 1 62.58 ? CBF 0QK 501 A 1 HETATM 11 C CBG 0QK . . . B 2 44.446 51.137 2.514 1 64.53 ? CBG 0QK 501 A 1 HETATM 12 C CBD 0QK . . . B 2 44.848 53.66 1.463 1 65.92 ? CBD 0QK 501 A 1 HETATM 13 C CBC 0QK . . . B 2 43.913 53.483 2.49 1 62.12 ? CBC 0QK 501 A 1 HETATM 14 C CBB 0QK . . . B 2 43.7 52.212 3.039 1 62.7 ? CBB 0QK 501 A 1 HETATM 15 N NAZ 0QK . . . B 2 42.784 51.978 4.018 1 58.88 ? NAZ 0QK 501 A 1 HETATM 16 C CAY 0QK . . . B 2 42.641 52.83 5.059 1 62.6 ? CAY 0QK 501 A 1 HETATM 17 O OBA 0QK . . . B 2 43.366 53.838 5.157 1 60.66 ? OBA 0QK 501 A 1 HETATM 18 N NAX 0QK . . . B 2 41.662 52.535 5.982 1 61.84 ? NAX 0QK 501 A 1 HETATM 19 C CAW 0QK . . . B 2 41.509 53.29 7.245 1 57.19 ? CAW 0QK 501 A 1 HETATM 20 C CAV 0QK . . . B 2 43.004 53.502 7.636 1 72.05 ? CAV 0QK 501 A 1 HETATM 21 C CAT 0QK . . . B 2 43.356 53.21 9.083 1 82.2 ? CAT 0QK 501 A 1 HETATM 22 N NAS 0QK . . . B 2 44.38 52.162 9.356 1 79.95 ? NAS 0QK 501 A 1 HETATM 23 C CAU 0QK . . . B 2 45.691 52.155 8.674 1 80.8 ? CAU 0QK 501 A 1 HETATM 24 C CBM 0QK . . . B 2 46.4 50.805 8.939 1 78.4 ? CBM 0QK 501 A 1 HETATM 25 C CBL 0QK . . . B 2 46.645 53.288 9.116 1 66.71 ? CBL 0QK 501 A 1 HETATM 26 C CAR 0QK . . . B 2 44.642 52.265 10.805 1 82.82 ? CAR 0QK 501 A 1 HETATM 27 C CAN 0QK . . . B 2 43.66 51.404 11.595 1 86.49 ? CAN 0QK 501 A 1 HETATM 28 O OAO 0QK . . . B 2 44.209 50.082 11.555 1 87.99 ? OAO 0QK 501 A 1 HETATM 29 C CAM 0QK . . . B 2 43.665 51.85 13.042 1 83.94 ? CAM 0QK 501 A 1 HETATM 30 O OAQ 0QK . . . B 2 42.321 51.998 13.46 1 80.1 ? OAQ 0QK 501 A 1 HETATM 31 C CAL 0QK . . . B 2 44.331 50.699 13.787 1 84.69 ? CAL 0QK 501 A 1 HETATM 32 O OAP 0QK . . . B 2 43.697 50.453 15.048 1 87.52 ? OAP 0QK 501 A 1 HETATM 33 C CAK 0QK . . . B 2 44.059 49.55 12.875 1 83.19 ? CAK 0QK 501 A 1 HETATM 34 N NAG 0QK . . . B 2 45.066 48.488 13.03 1 85.72 ? NAG 0QK 501 A 1 HETATM 35 C CAH 0QK . . . B 2 46.402 48.539 13.094 1 75.33 ? CAH 0QK 501 A 1 HETATM 36 C CAI 0QK . . . B 2 46.818 47.278 13.227 1 79.57 ? CAI 0QK 501 A 1 HETATM 37 N N3 0QK . . . B 2 43.426 46.682 13.094 1 80.58 ? N3 0QK 501 A 1 HETATM 38 N N1 0QK . . . B 2 44.422 44.529 13.334 1 85.54 ? N1 0QK 501 A 1 HETATM 39 N NAJ 0QK . . . B 2 46.739 44.408 13.492 1 87.83 ? NAJ 0QK 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #