data_4EKK
#
_model_server_result.job_id            mISyExh7fOOPiT96O1Ajvw 
_model_server_result.datetime_utc      '2024-12-28 08:13:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ekk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":502}' 
#
_entry.id    4EKK 
#
_exptl.entry_id    4EKK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.43 
_cell.angle_gamma         90 
_cell.entry_id            4EKK 
_cell.length_a            86.637 
_cell.length_b            55.853 
_cell.length_c            91.402 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4EKK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,K 1 1 
B,D,H,I,J,L,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 168 A LYS 307 1_555 A N TPO 169 A TPO 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C TPO 169 A TPO 308 1_555 A N PHE 170 A PHE 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 B C LYS 168 B LYS 307 1_555 B N TPO 169 B TPO 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 B C TPO 169 B TPO 308 1_555 B N PHE 170 B PHE 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
metalc ? metalc1 A OD1 ASN 140 A ASN 279 1_555 F MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc2 A OD2 ASP 153 A ASP 292 1_555 F MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc3 A OD1 ASP 153 A ASP 292 1_555 G MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc4 A OD2 ASP 153 A ASP 292 1_555 G MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
metalc ? metalc5 E O2A ANP . A ANP 501 1_555 F MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc6 E O1G ANP . A ANP 501 1_555 F MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc7 E O2B ANP . A ANP 501 1_555 G MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc8 E O3G ANP . A ANP 501 1_555 G MN MN . A MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc9 B OD1 ASN 140 B ASN 279 1_555 I MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc10 B OD2 ASP 153 B ASP 292 1_555 J MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? 
metalc ? metalc11 H O2A ANP . B ANP 501 1_555 I MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc12 H N3B ANP . B ANP 501 1_555 I MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
metalc ? metalc13 H O2B ANP . B ANP 501 1_555 J MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4EKK 
_atom_sites.fract_transf_matrix[1][1]    0.011542 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002756 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017904 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011248 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ANP A 1 501 1 ANP ANP . 
F 4 MN A 1 502 1 MN MN . 
G 4 MN A 1 503 2 MN MN . 
H 3 ANP B 1 501 2 ANP ANP . 
I 4 MN B 1 502 3 MN MN . 
J 4 MN B 1 503 4 MN MN . 
K 5 HOH A 1 601 2 HOH HOH . 
K 5 HOH A 2 602 3 HOH HOH . 
K 5 HOH A 3 603 6 HOH HOH . 
K 5 HOH A 4 604 7 HOH HOH . 
K 5 HOH A 5 605 8 HOH HOH . 
K 5 HOH A 6 606 11 HOH HOH . 
K 5 HOH A 7 607 15 HOH HOH . 
K 5 HOH A 8 608 16 HOH HOH . 
K 5 HOH A 9 609 22 HOH HOH . 
K 5 HOH A 10 610 25 HOH HOH . 
K 5 HOH A 11 611 26 HOH HOH . 
K 5 HOH A 12 612 28 HOH HOH . 
K 5 HOH A 13 613 30 HOH HOH . 
K 5 HOH A 14 614 31 HOH HOH . 
K 5 HOH A 15 615 32 HOH HOH . 
K 5 HOH A 16 616 33 HOH HOH . 
K 5 HOH A 17 617 36 HOH HOH . 
K 5 HOH A 18 618 37 HOH HOH . 
K 5 HOH A 19 619 38 HOH HOH . 
K 5 HOH A 20 620 43 HOH HOH . 
K 5 HOH A 21 621 45 HOH HOH . 
K 5 HOH A 22 622 46 HOH HOH . 
K 5 HOH A 23 623 47 HOH HOH . 
K 5 HOH A 24 624 48 HOH HOH . 
K 5 HOH A 25 625 49 HOH HOH . 
K 5 HOH A 26 626 51 HOH HOH . 
K 5 HOH A 27 627 52 HOH HOH . 
K 5 HOH A 28 628 55 HOH HOH . 
K 5 HOH A 29 629 57 HOH HOH . 
K 5 HOH A 30 630 58 HOH HOH . 
K 5 HOH A 31 631 62 HOH HOH . 
K 5 HOH A 32 632 63 HOH HOH . 
K 5 HOH A 33 633 64 HOH HOH . 
K 5 HOH A 34 634 65 HOH HOH . 
K 5 HOH A 35 635 66 HOH HOH . 
K 5 HOH A 36 636 67 HOH HOH . 
K 5 HOH A 37 637 68 HOH HOH . 
K 5 HOH A 38 638 70 HOH HOH . 
K 5 HOH A 39 639 73 HOH HOH . 
K 5 HOH A 40 640 76 HOH HOH . 
K 5 HOH A 41 641 78 HOH HOH . 
K 5 HOH A 42 642 79 HOH HOH . 
K 5 HOH A 43 643 80 HOH HOH . 
K 5 HOH A 44 644 83 HOH HOH . 
K 5 HOH A 45 645 84 HOH HOH . 
K 5 HOH A 46 646 87 HOH HOH . 
K 5 HOH A 47 647 89 HOH HOH . 
K 5 HOH A 48 648 90 HOH HOH . 
K 5 HOH A 49 649 91 HOH HOH . 
K 5 HOH A 50 650 94 HOH HOH . 
K 5 HOH A 51 651 95 HOH HOH . 
L 5 HOH B 1 601 1 HOH HOH . 
L 5 HOH B 2 602 4 HOH HOH . 
L 5 HOH B 3 603 5 HOH HOH . 
L 5 HOH B 4 604 9 HOH HOH . 
L 5 HOH B 5 605 10 HOH HOH . 
L 5 HOH B 6 606 12 HOH HOH . 
L 5 HOH B 7 607 13 HOH HOH . 
L 5 HOH B 8 608 14 HOH HOH . 
L 5 HOH B 9 609 17 HOH HOH . 
L 5 HOH B 10 610 18 HOH HOH . 
L 5 HOH B 11 611 19 HOH HOH . 
L 5 HOH B 12 612 20 HOH HOH . 
L 5 HOH B 13 613 21 HOH HOH . 
L 5 HOH B 14 614 23 HOH HOH . 
L 5 HOH B 15 615 27 HOH HOH . 
L 5 HOH B 16 616 29 HOH HOH . 
L 5 HOH B 17 617 34 HOH HOH . 
L 5 HOH B 18 618 35 HOH HOH . 
L 5 HOH B 19 619 39 HOH HOH . 
L 5 HOH B 20 620 40 HOH HOH . 
L 5 HOH B 21 621 41 HOH HOH . 
L 5 HOH B 22 622 42 HOH HOH . 
L 5 HOH B 23 623 44 HOH HOH . 
L 5 HOH B 24 624 50 HOH HOH . 
L 5 HOH B 25 625 53 HOH HOH . 
L 5 HOH B 26 626 54 HOH HOH . 
L 5 HOH B 27 627 56 HOH HOH . 
L 5 HOH B 28 628 59 HOH HOH . 
L 5 HOH B 29 629 60 HOH HOH . 
L 5 HOH B 30 630 61 HOH HOH . 
L 5 HOH B 31 631 69 HOH HOH . 
L 5 HOH B 32 632 71 HOH HOH . 
L 5 HOH B 33 633 72 HOH HOH . 
L 5 HOH B 34 634 74 HOH HOH . 
L 5 HOH B 35 635 75 HOH HOH . 
L 5 HOH B 36 636 77 HOH HOH . 
L 5 HOH B 37 637 81 HOH HOH . 
L 5 HOH B 38 638 82 HOH HOH . 
L 5 HOH B 39 639 85 HOH HOH . 
L 5 HOH B 40 640 86 HOH HOH . 
L 5 HOH B 41 641 88 HOH HOH . 
L 5 HOH B 42 642 92 HOH HOH . 
L 5 HOH B 43 643 93 HOH HOH . 
L 5 HOH B 44 644 96 HOH HOH . 
L 5 HOH B 45 645 97 HOH HOH . 
L 5 HOH B 46 646 98 HOH HOH . 
L 5 HOH B 47 647 99 HOH HOH . 
L 5 HOH B 48 648 100 HOH HOH . 
M 5 HOH D 1 101 24 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               57.293 
_atom_site.Cartn_y               2.758 
_atom_site.Cartn_z               22.191 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        64.71 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#