data_4EKN
#
_model_server_result.job_id            yCxdl6-tV6aiMEAyaeRUng 
_model_server_result.datetime_utc      '2024-12-21 18:38:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ekn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":406}' 
#
_entry.id    4EKN 
#
_exptl.entry_id    4EKN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4EKN 
_cell.length_a            96.96 
_cell.length_b            96.96 
_cell.length_c            136.439 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4EKN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1,2,3 
A,B,C,D,E,F,G,H 2 1,2,3,4,5,6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 96.96 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 48.48 83.969823 0 
4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 48.48 83.969823 68.2195 
5 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 96.96 0 68.2195 
6 'crystal symmetry operation' 12_555 x,x-y,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 68.2195 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 68 B GLU 68 1_555 F K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
metalc ? metalc2 A OE1 GLU 68 B GLU 68 1_555 F K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     4EKN 
_atom_sites.fract_transf_matrix[1][1]    0.010314 
_atom_sites.fract_transf_matrix[1][2]    0.005955 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011909 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007329 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 B 1 401 1 SO4 SO4 . 
C 2 SO4 B 1 402 2 SO4 SO4 . 
D 2 SO4 B 1 403 3 SO4 SO4 . 
E 2 SO4 B 1 404 4 SO4 SO4 . 
F 3 K B 1 405 5 K K . 
G 4 GOL B 1 406 500 GOL GOL . 
H 5 HOH B 1 501 1 HOH HOH . 
H 5 HOH B 2 502 2 HOH HOH . 
H 5 HOH B 3 503 3 HOH HOH . 
H 5 HOH B 4 504 4 HOH HOH . 
H 5 HOH B 5 505 5 HOH HOH . 
H 5 HOH B 6 506 6 HOH HOH . 
H 5 HOH B 7 507 7 HOH HOH . 
H 5 HOH B 8 508 8 HOH HOH . 
H 5 HOH B 9 509 9 HOH HOH . 
H 5 HOH B 10 510 10 HOH HOH . 
H 5 HOH B 11 511 11 HOH HOH . 
H 5 HOH B 12 512 12 HOH HOH . 
H 5 HOH B 13 513 13 HOH HOH . 
H 5 HOH B 14 514 14 HOH HOH . 
H 5 HOH B 15 515 15 HOH HOH . 
H 5 HOH B 16 516 16 HOH HOH . 
H 5 HOH B 17 517 17 HOH HOH . 
H 5 HOH B 18 518 18 HOH HOH . 
H 5 HOH B 19 519 19 HOH HOH . 
H 5 HOH B 20 520 20 HOH HOH . 
H 5 HOH B 21 521 21 HOH HOH . 
H 5 HOH B 22 522 22 HOH HOH . 
H 5 HOH B 23 523 23 HOH HOH . 
H 5 HOH B 24 524 24 HOH HOH . 
H 5 HOH B 25 525 25 HOH HOH . 
H 5 HOH B 26 526 26 HOH HOH . 
H 5 HOH B 27 527 27 HOH HOH . 
H 5 HOH B 28 528 28 HOH HOH . 
H 5 HOH B 29 529 29 HOH HOH . 
H 5 HOH B 30 530 30 HOH HOH . 
H 5 HOH B 31 531 31 HOH HOH . 
H 5 HOH B 32 532 32 HOH HOH . 
H 5 HOH B 33 533 33 HOH HOH . 
H 5 HOH B 34 534 34 HOH HOH . 
H 5 HOH B 35 535 35 HOH HOH . 
H 5 HOH B 36 536 36 HOH HOH . 
H 5 HOH B 37 537 37 HOH HOH . 
H 5 HOH B 38 538 38 HOH HOH . 
H 5 HOH B 39 539 39 HOH HOH . 
H 5 HOH B 40 540 40 HOH HOH . 
H 5 HOH B 41 541 41 HOH HOH . 
H 5 HOH B 42 542 42 HOH HOH . 
H 5 HOH B 43 543 43 HOH HOH . 
H 5 HOH B 44 544 44 HOH HOH . 
H 5 HOH B 45 545 45 HOH HOH . 
H 5 HOH B 46 546 46 HOH HOH . 
H 5 HOH B 47 547 47 HOH HOH . 
H 5 HOH B 48 548 48 HOH HOH . 
H 5 HOH B 49 549 49 HOH HOH . 
H 5 HOH B 50 550 50 HOH HOH . 
H 5 HOH B 51 551 51 HOH HOH . 
H 5 HOH B 52 552 52 HOH HOH . 
H 5 HOH B 53 553 53 HOH HOH . 
H 5 HOH B 54 554 54 HOH HOH . 
H 5 HOH B 55 555 55 HOH HOH . 
H 5 HOH B 56 556 56 HOH HOH . 
H 5 HOH B 57 557 57 HOH HOH . 
H 5 HOH B 58 558 58 HOH HOH . 
H 5 HOH B 59 559 59 HOH HOH . 
H 5 HOH B 60 560 60 HOH HOH . 
H 5 HOH B 61 561 61 HOH HOH . 
H 5 HOH B 62 562 62 HOH HOH . 
H 5 HOH B 63 563 63 HOH HOH . 
H 5 HOH B 64 564 64 HOH HOH . 
H 5 HOH B 65 565 65 HOH HOH . 
H 5 HOH B 66 566 66 HOH HOH . 
H 5 HOH B 67 567 67 HOH HOH . 
H 5 HOH B 68 568 68 HOH HOH . 
H 5 HOH B 69 569 69 HOH HOH . 
H 5 HOH B 70 570 70 HOH HOH . 
H 5 HOH B 71 571 71 HOH HOH . 
H 5 HOH B 72 572 72 HOH HOH . 
H 5 HOH B 73 573 73 HOH HOH . 
H 5 HOH B 74 574 74 HOH HOH . 
H 5 HOH B 75 575 75 HOH HOH . 
H 5 HOH B 76 576 76 HOH HOH . 
H 5 HOH B 77 577 77 HOH HOH . 
H 5 HOH B 78 578 78 HOH HOH . 
H 5 HOH B 79 579 79 HOH HOH . 
H 5 HOH B 80 580 80 HOH HOH . 
H 5 HOH B 81 581 81 HOH HOH . 
H 5 HOH B 82 582 82 HOH HOH . 
H 5 HOH B 83 583 83 HOH HOH . 
H 5 HOH B 84 584 84 HOH HOH . 
H 5 HOH B 85 585 85 HOH HOH . 
H 5 HOH B 86 586 86 HOH HOH . 
H 5 HOH B 87 587 87 HOH HOH . 
H 5 HOH B 88 588 88 HOH HOH . 
H 5 HOH B 89 589 89 HOH HOH . 
H 5 HOH B 90 590 90 HOH HOH . 
H 5 HOH B 91 591 91 HOH HOH . 
H 5 HOH B 92 592 92 HOH HOH . 
H 5 HOH B 93 593 93 HOH HOH . 
H 5 HOH B 94 594 94 HOH HOH . 
H 5 HOH B 95 595 95 HOH HOH . 
H 5 HOH B 96 596 96 HOH HOH . 
H 5 HOH B 97 597 97 HOH HOH . 
H 5 HOH B 98 598 98 HOH HOH . 
H 5 HOH B 99 599 99 HOH HOH . 
H 5 HOH B 100 600 100 HOH HOH . 
H 5 HOH B 101 601 101 HOH HOH . 
H 5 HOH B 102 602 102 HOH HOH . 
H 5 HOH B 103 603 103 HOH HOH . 
H 5 HOH B 104 604 104 HOH HOH . 
H 5 HOH B 105 605 105 HOH HOH . 
H 5 HOH B 106 606 106 HOH HOH . 
H 5 HOH B 107 607 107 HOH HOH . 
H 5 HOH B 108 608 108 HOH HOH . 
H 5 HOH B 109 609 109 HOH HOH . 
H 5 HOH B 110 610 110 HOH HOH . 
H 5 HOH B 111 611 111 HOH HOH . 
H 5 HOH B 112 612 112 HOH HOH . 
H 5 HOH B 113 613 113 HOH HOH . 
H 5 HOH B 114 614 114 HOH HOH . 
H 5 HOH B 115 615 115 HOH HOH . 
H 5 HOH B 116 616 116 HOH HOH . 
H 5 HOH B 117 617 117 HOH HOH . 
H 5 HOH B 118 618 118 HOH HOH . 
H 5 HOH B 119 619 119 HOH HOH . 
H 5 HOH B 120 620 120 HOH HOH . 
H 5 HOH B 121 621 121 HOH HOH . 
H 5 HOH B 122 622 122 HOH HOH . 
H 5 HOH B 123 623 123 HOH HOH . 
H 5 HOH B 124 624 124 HOH HOH . 
H 5 HOH B 125 625 125 HOH HOH . 
H 5 HOH B 126 626 126 HOH HOH . 
H 5 HOH B 127 627 127 HOH HOH . 
H 5 HOH B 128 628 128 HOH HOH . 
H 5 HOH B 129 629 129 HOH HOH . 
H 5 HOH B 130 630 130 HOH HOH . 
H 5 HOH B 131 631 131 HOH HOH . 
H 5 HOH B 132 632 132 HOH HOH . 
H 5 HOH B 133 633 133 HOH HOH . 
H 5 HOH B 134 634 134 HOH HOH . 
H 5 HOH B 135 635 135 HOH HOH . 
H 5 HOH B 136 636 136 HOH HOH . 
H 5 HOH B 137 637 137 HOH HOH . 
H 5 HOH B 138 638 138 HOH HOH . 
H 5 HOH B 139 639 139 HOH HOH . 
H 5 HOH B 140 640 140 HOH HOH . 
H 5 HOH B 141 641 141 HOH HOH . 
H 5 HOH B 142 642 142 HOH HOH . 
H 5 HOH B 143 643 143 HOH HOH . 
H 5 HOH B 144 644 144 HOH HOH . 
H 5 HOH B 145 645 145 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 4 49.851 27.325 -10.531 0.33 73.45 ? C1 GOL 406 B 1 
HETATM 2 O O1 GOL . . . G 4 50.814 28.325 -10.76 0.33 67.68 ? O1 GOL 406 B 1 
HETATM 3 C C2 GOL . . . G 4 48.543 27.962 -10.068 0.33 74.12 ? C2 GOL 406 B 1 
HETATM 4 O O2 GOL . . . G 4 48.539 29.333 -10.405 0.33 73.97 ? O2 GOL 406 B 1 
HETATM 5 C C3 GOL . . . G 4 47.368 27.266 -10.751 0.33 73.6 ? C3 GOL 406 B 1 
HETATM 6 O O3 GOL . . . G 4 47.396 25.889 -10.463 0.33 67.73 ? O3 GOL 406 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           6 
#