data_4ELM # _model_server_result.job_id 3rZyoBxLf6WW15tcU31TcA _model_server_result.datetime_utc '2024-11-01 15:37:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4elm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":306}' # _entry.id 4ELM # _exptl.entry_id 4ELM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.53 _cell.angle_gamma 90 _cell.entry_id 4ELM _cell.length_a 98.514 _cell.length_b 126.996 _cell.length_c 104.349 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ELM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G,H,I,K,L,M,N 1 1 B,D,E,F,J,O,P,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 N N N ? 9 R N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 6 4 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n I NAG 1 I 1 NAG A 521 NAG 5 n I NAG 2 I 2 NAG A 522 NAG 6 n J NAG 1 J 1 NAG C 521 NAG 6 n J NAG 2 J 2 NAG C 522 NAG 6 n J BMA 3 J 3 BMA C 523 BMA 6 n J FUC 4 J 4 FUC C 525 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf2 A SG CYS 208 A CYS 208 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 104 C CYS 104 1_555 B SG CYS 168 C CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf4 B SG CYS 208 C CYS 208 1_555 B SG CYS 263 C CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 C SG CYS 25 B CYS 25 1_555 C SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 D SG CYS 25 D CYS 25 1_555 D SG CYS 80 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 E SG CYS 24 E CYS 24 1_555 E SG CYS 90 E CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf8 E SG CYS 162 E CYS 162 1_555 F SG CYS 172 F CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 F SG CYS 24 F CYS 23 1_555 F SG CYS 93 F CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 F SG CYS 146 F CYS 145 1_555 F SG CYS 211 F CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf11 G SG CYS 24 G CYS 24 1_555 G SG CYS 90 G CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf12 G SG CYS 137 G CYS 137 1_555 G SG CYS 187 G CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf13 G SG CYS 162 G CYS 162 1_555 H SG CYS 172 H CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf14 H SG CYS 24 H CYS 23 1_555 H SG CYS 93 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf15 H SG CYS 146 H CYS 145 1_555 H SG CYS 211 H CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A ND2 ASN 20 A ASN 20 1_555 K C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 A ND2 ASN 42 A ASN 42 1_555 L C1 NAG . A NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale3 A ND2 ASN 165 A ASN 165 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 B ND2 ASN 20 C ASN 20 1_555 O C1 NAG . C NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale5 B ND2 ASN 42 C ASN 42 1_555 P C1 NAG . C NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 B ND2 ASN 165 C ASN 165 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale7 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale9 J O6 NAG . J NAG 1 1_555 J C1 FUC . J FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale10 J O4 NAG . J NAG 2 1_555 J C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 335 n n C1 O2 PLM doub 336 n n C1 C2 PLM sing 337 n n O1 H PLM sing 338 n n C2 C3 PLM sing 339 n n C2 H21 PLM sing 340 n n C2 H22 PLM sing 341 n n C3 C4 PLM sing 342 n n C3 H31 PLM sing 343 n n C3 H32 PLM sing 344 n n C4 C5 PLM sing 345 n n C4 H41 PLM sing 346 n n C4 H42 PLM sing 347 n n C5 C6 PLM sing 348 n n C5 H51 PLM sing 349 n n C5 H52 PLM sing 350 n n C6 C7 PLM sing 351 n n C6 H61 PLM sing 352 n n C6 H62 PLM sing 353 n n C7 C8 PLM sing 354 n n C7 H71 PLM sing 355 n n C7 H72 PLM sing 356 n n C8 C9 PLM sing 357 n n C8 H81 PLM sing 358 n n C8 H82 PLM sing 359 n n C9 CA PLM sing 360 n n C9 H91 PLM sing 361 n n C9 H92 PLM sing 362 n n CA CB PLM sing 363 n n CA HA1 PLM sing 364 n n CA HA2 PLM sing 365 n n CB CC PLM sing 366 n n CB HB1 PLM sing 367 n n CB HB2 PLM sing 368 n n CC CD PLM sing 369 n n CC HC1 PLM sing 370 n n CC HC2 PLM sing 371 n n CD CE PLM sing 372 n n CD HD1 PLM sing 373 n n CD HD2 PLM sing 374 n n CE CF PLM sing 375 n n CE HE1 PLM sing 376 n n CE HE2 PLM sing 377 n n CF CG PLM sing 378 n n CF HF1 PLM sing 379 n n CF HF2 PLM sing 380 n n CG HG1 PLM sing 381 n n CG HG2 PLM sing 382 n n CG HG3 PLM sing 383 n n # _atom_sites.entry_id 4ELM _atom_sites.fract_transf_matrix[1][1] 0.010151 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003801 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007874 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 7 NAG A 1 303 501 NAG NAG . L 7 NAG A 1 304 511 NAG NAG . M 8 SGF A 1 305 2 SGF CIS . N 9 PLM A 1 306 3 PLM PLM . O 7 NAG C 1 501 501 NAG NAG . P 7 NAG C 1 502 511 NAG NAG . Q 8 SGF C 1 507 1 SGF CIS . R 9 PLM C 1 508 4 PLM PLM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . N 9 38.438 -33.51 -8.094 1 87.18 ? C1 PLM 306 A 1 HETATM 2 O O1 PLM . . . N 9 39.281 -32.713 -7.617 1 87.71 ? O1 PLM 306 A 1 HETATM 3 O O2 PLM . . . N 9 37.958 -33.381 -9.249 1 86.28 ? O2 PLM 306 A 1 HETATM 4 C C2 PLM . . . N 9 37.968 -34.669 -7.233 1 84.49 ? C2 PLM 306 A 1 HETATM 5 C C3 PLM . . . N 9 39.072 -35.702 -6.996 1 83.62 ? C3 PLM 306 A 1 HETATM 6 C C4 PLM . . . N 9 39.103 -36.187 -5.546 1 80.21 ? C4 PLM 306 A 1 HETATM 7 C C5 PLM . . . N 9 39.601 -37.628 -5.433 1 78.66 ? C5 PLM 306 A 1 HETATM 8 C C6 PLM . . . N 9 41.047 -37.7 -4.949 1 73.88 ? C6 PLM 306 A 1 HETATM 9 C C7 PLM . . . N 9 41.703 -39.02 -5.344 1 71.82 ? C7 PLM 306 A 1 HETATM 10 C C8 PLM . . . N 9 42.842 -38.793 -6.336 1 69.23 ? C8 PLM 306 A 1 HETATM 11 C C9 PLM . . . N 9 44.197 -39.178 -5.75 1 64.37 ? C9 PLM 306 A 1 HETATM 12 C CA PLM . . . N 9 45.358 -38.592 -6.55 1 64.77 ? CA PLM 306 A 1 HETATM 13 C CB PLM . . . N 9 45.966 -37.364 -5.87 1 65 ? CB PLM 306 A 1 HETATM 14 C CC PLM . . . N 9 46.515 -36.35 -6.874 1 64.6 ? CC PLM 306 A 1 HETATM 15 C CD PLM . . . N 9 46.115 -34.918 -6.523 1 64.89 ? CD PLM 306 A 1 HETATM 16 C CE PLM . . . N 9 45.386 -34.241 -7.681 1 65.94 ? CE PLM 306 A 1 HETATM 17 C CF PLM . . . N 9 44.496 -33.098 -7.197 1 67.71 ? CF PLM 306 A 1 HETATM 18 C CG PLM . . . N 9 44.018 -32.217 -8.338 1 67.94 ? CG PLM 306 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #