data_4EN3 # _model_server_result.job_id yTniz7NGwdE0ydYakZCCwg _model_server_result.datetime_utc '2024-10-30 03:22:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4en3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 4EN3 # _exptl.entry_id 4EN3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.31 _cell.angle_gamma 90 _cell.entry_id 4EN3 _cell.length_a 57.112 _cell.length_b 72.573 _cell.length_c 113.747 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EN3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 K N N ? 8 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 C CYS 102 1_555 A SG CYS 167 C CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 207 C CYS 206 1_555 A SG CYS 262 C CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 26 A CYS 22 1_555 B SG CYS 92 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 139 A CYS 135 1_555 B SG CYS 189 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 164 A CYS 160 1_555 C SG CYS 176 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 C SG CYS 26 B CYS 23 1_555 C SG CYS 94 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 C SG CYS 150 B CYS 147 1_555 C SG CYS 215 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 D SG CYS 26 D CYS 25 1_555 D SG CYS 81 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 311 n n C1 C2 GOL sing 312 n n C1 H11 GOL sing 313 n n C1 H12 GOL sing 314 n n O1 HO1 GOL sing 315 n n C2 O2 GOL sing 316 n n C2 C3 GOL sing 317 n n C2 H2 GOL sing 318 n n O2 HO2 GOL sing 319 n n C3 O3 GOL sing 320 n n C3 H31 GOL sing 321 n n C3 H32 GOL sing 322 n n O3 HO3 GOL sing 323 n n # _atom_sites.entry_id 4EN3 _atom_sites.fract_transf_matrix[1][1] 0.017509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004142 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013779 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009034 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG C 1 301 301 NAG NAG . F 5 NAG C 1 302 302 NAG NAG . G 5 NAG C 1 303 303 NAG NAG . H 6 AGH C 1 304 304 AGH AGH . I 7 FUC A 1 301 301 FUC FUC . J 5 NAG A 1 302 302 NAG NAG . K 8 GOL B 1 301 301 GOL GOL . L 5 NAG B 1 302 302 NAG NAG . M 8 GOL B 1 303 303 GOL GOL . N 9 HOH C 1 1101 1101 HOH HOH . N 9 HOH C 2 1102 1102 HOH HOH . N 9 HOH C 3 1103 1103 HOH HOH . N 9 HOH C 4 1104 1104 HOH HOH . N 9 HOH C 5 1105 1105 HOH HOH . N 9 HOH C 6 1106 1106 HOH HOH . N 9 HOH C 7 1107 1107 HOH HOH . N 9 HOH C 8 1108 1108 HOH HOH . N 9 HOH C 9 1109 1109 HOH HOH . N 9 HOH C 10 1110 1110 HOH HOH . N 9 HOH C 11 1111 1111 HOH HOH . N 9 HOH C 12 1112 1112 HOH HOH . N 9 HOH C 13 1113 1113 HOH HOH . N 9 HOH C 14 1114 1114 HOH HOH . N 9 HOH C 15 1115 1115 HOH HOH . N 9 HOH C 16 1116 1116 HOH HOH . N 9 HOH C 17 1117 1117 HOH HOH . N 9 HOH C 18 1118 1118 HOH HOH . N 9 HOH C 19 1119 1119 HOH HOH . N 9 HOH C 20 1120 1120 HOH HOH . N 9 HOH C 21 1121 1121 HOH HOH . N 9 HOH C 22 1122 1122 HOH HOH . N 9 HOH C 23 1123 1123 HOH HOH . N 9 HOH C 24 1124 1124 HOH HOH . N 9 HOH C 25 1125 1125 HOH HOH . N 9 HOH C 26 1126 1126 HOH HOH . N 9 HOH C 27 1127 1127 HOH HOH . N 9 HOH C 28 1128 1128 HOH HOH . N 9 HOH C 29 1129 1129 HOH HOH . N 9 HOH C 30 1130 1130 HOH HOH . N 9 HOH C 31 1131 1131 HOH HOH . N 9 HOH C 32 1132 1132 HOH HOH . N 9 HOH C 33 1133 1133 HOH HOH . O 9 HOH A 1 1101 1101 HOH HOH . O 9 HOH A 2 1102 1102 HOH HOH . O 9 HOH A 3 1103 1103 HOH HOH . O 9 HOH A 4 1104 1104 HOH HOH . O 9 HOH A 5 1105 1105 HOH HOH . O 9 HOH A 6 1106 1106 HOH HOH . O 9 HOH A 7 1107 1107 HOH HOH . O 9 HOH A 8 1108 1108 HOH HOH . O 9 HOH A 9 1109 1109 HOH HOH . O 9 HOH A 10 1110 1110 HOH HOH . O 9 HOH A 11 1111 1111 HOH HOH . O 9 HOH A 12 1112 1112 HOH HOH . O 9 HOH A 13 1113 1113 HOH HOH . O 9 HOH A 14 1114 1114 HOH HOH . O 9 HOH A 15 1115 1115 HOH HOH . O 9 HOH A 16 1116 1116 HOH HOH . O 9 HOH A 17 1117 1117 HOH HOH . O 9 HOH A 18 1118 1118 HOH HOH . O 9 HOH A 19 1119 1119 HOH HOH . O 9 HOH A 20 1120 1120 HOH HOH . P 9 HOH B 1 401 401 HOH HOH . P 9 HOH B 2 402 402 HOH HOH . P 9 HOH B 3 403 403 HOH HOH . P 9 HOH B 4 404 404 HOH HOH . P 9 HOH B 5 405 405 HOH HOH . P 9 HOH B 6 406 406 HOH HOH . P 9 HOH B 7 407 407 HOH HOH . P 9 HOH B 8 408 408 HOH HOH . P 9 HOH B 9 409 409 HOH HOH . P 9 HOH B 10 410 410 HOH HOH . P 9 HOH B 11 411 411 HOH HOH . P 9 HOH B 12 412 412 HOH HOH . P 9 HOH B 13 413 413 HOH HOH . P 9 HOH B 14 414 414 HOH HOH . P 9 HOH B 15 415 415 HOH HOH . P 9 HOH B 16 416 416 HOH HOH . P 9 HOH B 17 417 417 HOH HOH . P 9 HOH B 18 418 418 HOH HOH . P 9 HOH B 19 419 419 HOH HOH . P 9 HOH B 20 420 420 HOH HOH . P 9 HOH B 21 421 421 HOH HOH . P 9 HOH B 22 422 422 HOH HOH . P 9 HOH B 23 423 423 HOH HOH . P 9 HOH B 24 424 424 HOH HOH . P 9 HOH B 25 425 425 HOH HOH . P 9 HOH B 26 426 426 HOH HOH . Q 9 HOH D 1 101 101 HOH HOH . Q 9 HOH D 2 102 102 HOH HOH . Q 9 HOH D 3 103 103 HOH HOH . Q 9 HOH D 4 104 104 HOH HOH . Q 9 HOH D 5 105 105 HOH HOH . Q 9 HOH D 6 106 106 HOH HOH . Q 9 HOH D 7 107 107 HOH HOH . Q 9 HOH D 8 108 108 HOH HOH . Q 9 HOH D 9 109 109 HOH HOH . Q 9 HOH D 10 110 110 HOH HOH . Q 9 HOH D 11 111 111 HOH HOH . Q 9 HOH D 12 112 112 HOH HOH . Q 9 HOH D 13 113 113 HOH HOH . Q 9 HOH D 14 114 114 HOH HOH . Q 9 HOH D 15 115 115 HOH HOH . Q 9 HOH D 16 116 116 HOH HOH . Q 9 HOH D 17 117 117 HOH HOH . Q 9 HOH D 18 118 118 HOH HOH . Q 9 HOH D 19 119 119 HOH HOH . Q 9 HOH D 20 120 120 HOH HOH . Q 9 HOH D 21 121 121 HOH HOH . Q 9 HOH D 22 122 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 8 5.424 8.243 21.094 1 60.52 ? C1 GOL 301 B 1 HETATM 2 O O1 GOL . . . K 8 6.588 8.046 21.866 1 55.29 ? O1 GOL 301 B 1 HETATM 3 C C2 GOL . . . K 8 4.655 6.932 20.995 1 62.8 ? C2 GOL 301 B 1 HETATM 4 O O2 GOL . . . K 8 4.833 6.373 19.712 1 61.01 ? O2 GOL 301 B 1 HETATM 5 C C3 GOL . . . K 8 5.176 5.968 22.055 1 62.22 ? C3 GOL 301 B 1 HETATM 6 O O3 GOL . . . K 8 6.585 5.929 22.004 1 59.42 ? O3 GOL 301 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #