data_4ENZ # _model_server_result.job_id FmB3lJymsGmkYg_bhUok0A _model_server_result.datetime_utc '2024-10-19 11:49:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4enz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 4ENZ # _exptl.entry_id 4ENZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ENZ _cell.length_a 210.775 _cell.length_b 210.775 _cell.length_c 84.502 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ENZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 174 A CYS 155 1_555 A SG CYS 200 A CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? disulf ? disulf2 A SG CYS 276 A CYS 257 1_555 A SG CYS 357 A CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf3 A SG CYS 534 A CYS 515 1_555 A SG CYS 560 A CYS 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf4 A SG CYS 637 A CYS 618 1_555 A SG CYS 718 A CYS 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? disulf ? disulf5 A SG CYS 874 A CYS 855 1_555 A SG CYS 900 A CYS 881 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? covale ? covale1 A ND2 ASN 138 A ASN 119 1_555 B C1 NAG . A NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 A ND2 ASN 397 A ASN 378 1_555 L C1 NAG . A NAG 1111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? metalc ? metalc1 A O TYR 55 A TYR 36 1_555 M NA NA . A NA 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc2 A O GLY 64 A GLY 45 1_555 M NA NA . A NA 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc3 A OH TYR 67 A TYR 48 1_555 M NA NA . A NA 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc4 A NE2 HIS 120 A HIS 101 1_555 E CU CU . A CU 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc5 A NE2 HIS 122 A HIS 103 1_555 F CU CU . A CU 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.733 ? metalc ? metalc6 A O LYS 128 A LYS 109 1_555 K CA CA . A CA 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc7 A O GLN 143 A GLN 124 1_555 K CA CA . A CA 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc8 A OD1 ASP 146 A ASP 127 1_555 K CA CA . A CA 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc9 A OD2 ASP 146 A ASP 127 1_555 K CA CA . A CA 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc10 A OD2 ASP 147 A ASP 128 1_555 K CA CA . A CA 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc11 A OD1 ASP 147 A ASP 128 1_555 K CA CA . A CA 1110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc12 A NE2 HIS 180 A HIS 161 1_555 F CU CU . A CU 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc13 A NE2 HIS 182 A HIS 163 1_555 D CU CU . A CU 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc14 A O SER 256 A SER 237 1_555 M NA NA . A NA 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc15 A ND1 HIS 295 A HIS 276 1_555 C CU CU . A CU 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? metalc ? metalc16 A SG CYS 338 A CYS 319 1_555 C CU CU . A CU 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc17 A ND1 HIS 343 A HIS 324 1_555 C CU CU . A CU 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc18 A ND1 HIS 656 A HIS 637 1_555 G CU CU . A CU 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc19 A SG CYS 699 A CYS 680 1_555 G CU CU . A CU 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc20 A ND1 HIS 704 A HIS 685 1_555 G CU CU . A CU 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? metalc ? metalc21 A ND1 HIS 994 A HIS 975 1_555 H CU CU . A CU 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc22 A NE2 HIS 997 A HIS 978 1_555 E CU CU . A CU 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc23 A NE2 HIS 999 A HIS 980 1_555 D CU CU . A CU 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc24 A NE2 HIS 1039 A HIS 1020 1_555 D CU CU . A CU 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc25 A SG CYS 1040 A CYS 1021 1_555 H CU CU . A CU 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc26 A NE2 HIS 1041 A HIS 1022 1_555 F CU CU . A CU 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? metalc ? metalc27 A ND1 HIS 1045 A HIS 1026 1_555 H CU CU . A CU 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc28 D CU CU . A CU 1103 1_555 J O2 OXY . A OXY 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc29 E CU CU . A CU 1104 1_555 J O2 OXY . A OXY 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc30 F CU CU . A CU 1105 1_555 J O1 OXY . A OXY 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc31 K CA CA . A CA 1110 1_555 O O HOH . A HOH 1242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 250 n n C1 O1 NAG sing 251 n n C1 O5 NAG sing 252 n n C1 H1 NAG sing 253 n n C2 C3 NAG sing 254 n n C2 N2 NAG sing 255 n n C2 H2 NAG sing 256 n n C3 C4 NAG sing 257 n n C3 O3 NAG sing 258 n n C3 H3 NAG sing 259 n n C4 C5 NAG sing 260 n n C4 O4 NAG sing 261 n n C4 H4 NAG sing 262 n n C5 C6 NAG sing 263 n n C5 O5 NAG sing 264 n n C5 H5 NAG sing 265 n n C6 O6 NAG sing 266 n n C6 H61 NAG sing 267 n n C6 H62 NAG sing 268 n n C7 C8 NAG sing 269 n n C7 N2 NAG sing 270 n n C7 O7 NAG doub 271 n n C8 H81 NAG sing 272 n n C8 H82 NAG sing 273 n n C8 H83 NAG sing 274 n n N2 HN2 NAG sing 275 n n O1 HO1 NAG sing 276 n n O3 HO3 NAG sing 277 n n O4 HO4 NAG sing 278 n n O6 HO6 NAG sing 279 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4ENZ _atom_sites.fract_transf_matrix[1][1] 0.004744 _atom_sites.fract_transf_matrix[1][2] 0.002739 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011834 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 1101 1119 NAG NAG . C 3 CU A 1 1102 1050 CU CU . D 3 CU A 1 1103 1051 CU CU . E 3 CU A 1 1104 1104 CU CU . F 3 CU A 1 1105 1105 CU CU . G 3 CU A 1 1106 1056 CU CU . H 3 CU A 1 1107 1058 CU CU . I 4 O A 1 1108 2050 O O . J 5 OXY A 1 1109 1254 OXY OXY . K 6 CA A 1 1110 1101 CA CA . L 2 NAG A 1 1111 1378 NAG NAG . M 7 NA A 1 1112 2129 NA NA . N 8 GOL A 1 1113 2057 GOL GOL . O 9 HOH A 1 1201 1 HOH HOH . O 9 HOH A 2 1202 3 HOH HOH . O 9 HOH A 3 1203 4 HOH HOH . O 9 HOH A 4 1204 5 HOH HOH . O 9 HOH A 5 1205 6 HOH HOH . O 9 HOH A 6 1206 7 HOH HOH . O 9 HOH A 7 1207 8 HOH HOH . O 9 HOH A 8 1208 9 HOH HOH . O 9 HOH A 9 1209 13 HOH HOH . O 9 HOH A 10 1210 12 HOH HOH . O 9 HOH A 11 1211 14 HOH HOH . O 9 HOH A 12 1212 15 HOH HOH . O 9 HOH A 13 1213 16 HOH HOH . O 9 HOH A 14 1214 20 HOH HOH . O 9 HOH A 15 1215 21 HOH HOH . O 9 HOH A 16 1216 22 HOH HOH . O 9 HOH A 17 1217 23 HOH HOH . O 9 HOH A 18 1218 24 HOH HOH . O 9 HOH A 19 1219 25 HOH HOH . O 9 HOH A 20 1220 26 HOH HOH . O 9 HOH A 21 1221 27 HOH HOH . O 9 HOH A 22 1222 28 HOH HOH . O 9 HOH A 23 1223 29 HOH HOH . O 9 HOH A 24 1224 30 HOH HOH . O 9 HOH A 25 1225 31 HOH HOH . O 9 HOH A 26 1226 33 HOH HOH . O 9 HOH A 27 1227 37 HOH HOH . O 9 HOH A 28 1228 38 HOH HOH . O 9 HOH A 29 1229 40 HOH HOH . O 9 HOH A 30 1230 42 HOH HOH . O 9 HOH A 31 1231 45 HOH HOH . O 9 HOH A 32 1232 47 HOH HOH . O 9 HOH A 33 1233 51 HOH HOH . O 9 HOH A 34 1234 53 HOH HOH . O 9 HOH A 35 1235 54 HOH HOH . O 9 HOH A 36 1236 57 HOH HOH . O 9 HOH A 37 1237 58 HOH HOH . O 9 HOH A 38 1238 59 HOH HOH . O 9 HOH A 39 1239 60 HOH HOH . O 9 HOH A 40 1240 61 HOH HOH . O 9 HOH A 41 1241 63 HOH HOH . O 9 HOH A 42 1242 64 HOH HOH . O 9 HOH A 43 1243 65 HOH HOH . O 9 HOH A 44 1244 66 HOH HOH . O 9 HOH A 45 1245 67 HOH HOH . O 9 HOH A 46 1246 68 HOH HOH . O 9 HOH A 47 1247 69 HOH HOH . O 9 HOH A 48 1248 70 HOH HOH . O 9 HOH A 49 1249 73 HOH HOH . O 9 HOH A 50 1250 77 HOH HOH . O 9 HOH A 51 1251 78 HOH HOH . O 9 HOH A 52 1252 79 HOH HOH . O 9 HOH A 53 1253 80 HOH HOH . O 9 HOH A 54 1254 81 HOH HOH . O 9 HOH A 55 1255 82 HOH HOH . O 9 HOH A 56 1256 83 HOH HOH . O 9 HOH A 57 1257 84 HOH HOH . O 9 HOH A 58 1258 91 HOH HOH . O 9 HOH A 59 1259 92 HOH HOH . O 9 HOH A 60 1260 93 HOH HOH . O 9 HOH A 61 1261 95 HOH HOH . O 9 HOH A 62 1262 96 HOH HOH . O 9 HOH A 63 1263 97 HOH HOH . O 9 HOH A 64 1264 98 HOH HOH . O 9 HOH A 65 1265 99 HOH HOH . O 9 HOH A 66 1266 110 HOH HOH . O 9 HOH A 67 1267 111 HOH HOH . O 9 HOH A 68 1268 112 HOH HOH . O 9 HOH A 69 1269 113 HOH HOH . O 9 HOH A 70 1270 114 HOH HOH . O 9 HOH A 71 1271 115 HOH HOH . O 9 HOH A 72 1272 116 HOH HOH . O 9 HOH A 73 1273 117 HOH HOH . O 9 HOH A 74 1274 118 HOH HOH . O 9 HOH A 75 1275 119 HOH HOH . O 9 HOH A 76 1276 120 HOH HOH . O 9 HOH A 77 1277 121 HOH HOH . O 9 HOH A 78 1278 122 HOH HOH . O 9 HOH A 79 1279 123 HOH HOH . O 9 HOH A 80 1280 124 HOH HOH . O 9 HOH A 81 1281 125 HOH HOH . O 9 HOH A 82 1282 126 HOH HOH . O 9 HOH A 83 1283 127 HOH HOH . O 9 HOH A 84 1284 128 HOH HOH . O 9 HOH A 85 1285 131 HOH HOH . O 9 HOH A 86 1286 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 38.848 81.56 -3.154 1 78.74 ? C1 NAG 1101 A 1 HETATM 2 C C2 NAG . . . B 2 38.279 82.994 -3.087 1 81.11 ? C2 NAG 1101 A 1 HETATM 3 C C3 NAG . . . B 2 38.288 83.698 -4.467 1 82.27 ? C3 NAG 1101 A 1 HETATM 4 C C4 NAG . . . B 2 39.696 83.613 -5.08 1 83.79 ? C4 NAG 1101 A 1 HETATM 5 C C5 NAG . . . B 2 39.893 82.109 -5.294 1 84.2 ? C5 NAG 1101 A 1 HETATM 6 C C6 NAG . . . B 2 41.11 81.784 -6.158 1 86.59 ? C6 NAG 1101 A 1 HETATM 7 C C7 NAG . . . B 2 36.538 83.874 -1.557 1 76.52 ? C7 NAG 1101 A 1 HETATM 8 C C8 NAG . . . B 2 35.12 83.779 -1.083 1 71.95 ? C8 NAG 1101 A 1 HETATM 9 N N2 NAG . . . B 2 36.926 83.011 -2.524 1 79.02 ? N2 NAG 1101 A 1 HETATM 10 O O3 NAG . . . B 2 37.898 85.035 -4.297 1 80.33 ? O3 NAG 1101 A 1 HETATM 11 O O4 NAG . . . B 2 39.905 84.428 -6.236 1 83.62 ? O4 NAG 1101 A 1 HETATM 12 O O5 NAG . . . B 2 40.004 81.496 -4.009 1 81.74 ? O5 NAG 1101 A 1 HETATM 13 O O6 NAG . . . B 2 42.299 82.146 -5.488 1 88.57 ? O6 NAG 1101 A 1 HETATM 14 O O7 NAG . . . B 2 37.266 84.72 -1.047 1 75.37 ? O7 NAG 1101 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #