data_4EOK # _model_server_result.job_id BYOCWMuQ8yd4OKdF9Of68w _model_server_result.datetime_utc '2024-11-27 08:04:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eok # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 4EOK # _exptl.entry_id 4EOK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 108.159 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description MONOTHIOGLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EOK _cell.length_a 74.23 _cell.length_b 136.01 _cell.length_c 171.55 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EOK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 162 A TYR 159 1_555 A N TPO 163 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C TPO 163 A TPO 160 1_555 A N HIS 164 A HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 C C TYR 162 C TYR 159 1_555 C N TPO 163 C TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 C C TPO 163 C TPO 160 1_555 C N HIS 164 C HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C3 H8 O2 S' _chem_comp.formula_weight 108.159 _chem_comp.id SGM _chem_comp.mon_nstd_flag . _chem_comp.name MONOTHIOGLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SGM sing 343 n n C1 S1 SGM sing 344 n n C1 H11 SGM sing 345 n n C1 H12 SGM sing 346 n n C2 O2 SGM sing 347 n n C2 C3 SGM sing 348 n n C2 H2 SGM sing 349 n n O2 HO2 SGM sing 350 n n C3 O3 SGM sing 351 n n C3 H31 SGM sing 352 n n C3 H32 SGM sing 353 n n O3 HO3 SGM sing 354 n n S1 HS1 SGM sing 355 n n # _atom_sites.entry_id 4EOK _atom_sites.fract_transf_matrix[1][1] 0.013472 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007352 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 4SP A 1 301 1298 4SP 4SP . F 4 SGM B 1 501 4 SGM SGM . G 3 4SP C 1 301 1298 4SP 4SP . H 4 SGM D 1 501 4 SGM SGM . I 5 HOH A 1 401 1 HOH HOH . I 5 HOH A 2 402 2 HOH HOH . I 5 HOH A 3 403 3 HOH HOH . I 5 HOH A 4 404 4 HOH HOH . I 5 HOH A 5 405 6 HOH HOH . I 5 HOH A 6 406 7 HOH HOH . I 5 HOH A 7 407 8 HOH HOH . J 5 HOH B 1 601 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SGM . . . F 4 28.067 10.797 14.215 1 68.73 ? C1 SGM 501 B 1 HETATM 2 C C2 SGM . . . F 4 29.313 10.741 15.092 1 68.76 ? C2 SGM 501 B 1 HETATM 3 O O2 SGM . . . F 4 29.511 9.427 15.622 1 68.29 ? O2 SGM 501 B 1 HETATM 4 C C3 SGM . . . F 4 29.144 11.705 16.257 1 69.78 ? C3 SGM 501 B 1 HETATM 5 O O3 SGM . . . F 4 30.425 12.237 16.624 1 70.72 ? O3 SGM 501 B 1 HETATM 6 S S1 SGM . . . F 4 27.693 9.25 13.342 1 68.28 ? S1 SGM 501 B 1 # _model_server_stats.io_time_ms 85 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #