data_4EOL # _model_server_result.job_id qRtJ7U9HryKN9_Z9HW4khQ _model_server_result.datetime_utc '2024-11-24 16:28:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eol # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 4EOL # _exptl.entry_id 4EOL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 108.159 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description MONOTHIOGLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EOL _cell.length_a 73.85 _cell.length_b 133.94 _cell.length_c 173.67 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EOL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,J,K 1 1 C,D,H,I,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 162 A TYR 159 1_555 A N TPO 163 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C TPO 163 A TPO 160 1_555 A N HIS 164 A HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 C C TYR 162 C TYR 159 1_555 C N TPO 163 C TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 C C TPO 163 C TPO 160 1_555 C N HIS 164 C HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 B O MET 26 B MET 200 1_555 G MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc2 B O GLN 29 B GLN 203 1_555 G MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc3 B O ILE 32 B ILE 206 1_555 G MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? # _chem_comp.formula 'C3 H8 O2 S' _chem_comp.formula_weight 108.159 _chem_comp.id SGM _chem_comp.mon_nstd_flag . _chem_comp.name MONOTHIOGLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SGM sing 330 n n C1 S1 SGM sing 331 n n C1 H11 SGM sing 332 n n C1 H12 SGM sing 333 n n C2 O2 SGM sing 334 n n C2 C3 SGM sing 335 n n C2 H2 SGM sing 336 n n O2 HO2 SGM sing 337 n n C3 O3 SGM sing 338 n n C3 H31 SGM sing 339 n n C3 H32 SGM sing 340 n n O3 HO3 SGM sing 341 n n S1 HS1 SGM sing 342 n n # _atom_sites.entry_id 4EOL _atom_sites.fract_transf_matrix[1][1] 0.013541 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007466 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005758 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 1RO A 1 301 1 1RO RO . F 4 SGM B 1 501 4 SGM SGM . G 5 MG B 1 502 1 MG MG . H 3 1RO C 1 301 1 1RO RO . I 4 SGM D 1 501 4 SGM SGM . J 6 HOH A 1 401 2 HOH HOH . J 6 HOH A 2 402 3 HOH HOH . J 6 HOH A 3 403 4 HOH HOH . J 6 HOH A 4 404 7 HOH HOH . J 6 HOH A 5 405 8 HOH HOH . J 6 HOH A 6 406 9 HOH HOH . J 6 HOH A 7 407 10 HOH HOH . J 6 HOH A 8 408 12 HOH HOH . J 6 HOH A 9 409 14 HOH HOH . J 6 HOH A 10 410 17 HOH HOH . J 6 HOH A 11 411 18 HOH HOH . J 6 HOH A 12 412 19 HOH HOH . J 6 HOH A 13 413 23 HOH HOH . J 6 HOH A 14 414 28 HOH HOH . J 6 HOH A 15 415 29 HOH HOH . J 6 HOH A 16 416 30 HOH HOH . J 6 HOH A 17 417 31 HOH HOH . J 6 HOH A 18 418 33 HOH HOH . J 6 HOH A 19 419 36 HOH HOH . J 6 HOH A 20 420 37 HOH HOH . J 6 HOH A 21 421 38 HOH HOH . J 6 HOH A 22 422 39 HOH HOH . J 6 HOH A 23 423 40 HOH HOH . J 6 HOH A 24 424 41 HOH HOH . J 6 HOH A 25 425 42 HOH HOH . J 6 HOH A 26 426 45 HOH HOH . J 6 HOH A 27 427 48 HOH HOH . J 6 HOH A 28 428 49 HOH HOH . J 6 HOH A 29 429 50 HOH HOH . J 6 HOH A 30 430 51 HOH HOH . J 6 HOH A 31 431 52 HOH HOH . J 6 HOH A 32 432 58 HOH HOH . J 6 HOH A 33 433 60 HOH HOH . J 6 HOH A 34 434 61 HOH HOH . J 6 HOH A 35 435 63 HOH HOH . J 6 HOH A 36 436 66 HOH HOH . K 6 HOH B 1 601 1 HOH HOH . K 6 HOH B 2 602 5 HOH HOH . K 6 HOH B 3 603 13 HOH HOH . K 6 HOH B 4 604 16 HOH HOH . K 6 HOH B 5 605 27 HOH HOH . K 6 HOH B 6 606 32 HOH HOH . K 6 HOH B 7 607 43 HOH HOH . K 6 HOH B 8 608 46 HOH HOH . K 6 HOH B 9 609 56 HOH HOH . K 6 HOH B 10 610 57 HOH HOH . K 6 HOH B 11 611 59 HOH HOH . K 6 HOH B 12 612 62 HOH HOH . K 6 HOH B 13 613 65 HOH HOH . K 6 HOH B 14 614 67 HOH HOH . L 6 HOH C 1 401 6 HOH HOH . L 6 HOH C 2 402 11 HOH HOH . L 6 HOH C 3 403 20 HOH HOH . L 6 HOH C 4 404 21 HOH HOH . L 6 HOH C 5 405 22 HOH HOH . L 6 HOH C 6 406 24 HOH HOH . L 6 HOH C 7 407 25 HOH HOH . L 6 HOH C 8 408 26 HOH HOH . L 6 HOH C 9 409 34 HOH HOH . L 6 HOH C 10 410 35 HOH HOH . L 6 HOH C 11 411 47 HOH HOH . L 6 HOH C 12 412 54 HOH HOH . L 6 HOH C 13 413 64 HOH HOH . M 6 HOH D 1 601 44 HOH HOH . M 6 HOH D 2 602 53 HOH HOH . M 6 HOH D 3 603 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SGM . . . F 4 -28.818 -8.164 14.011 1 51.08 ? C1 SGM 501 B 1 HETATM 2 C C2 SGM . . . F 4 -28.748 -9.554 14.632 1 51.57 ? C2 SGM 501 B 1 HETATM 3 O O2 SGM . . . F 4 -28.275 -10.497 13.659 1 50.43 ? O2 SGM 501 B 1 HETATM 4 C C3 SGM . . . F 4 -30.132 -9.943 15.124 1 51.8 ? C3 SGM 501 B 1 HETATM 5 O O3 SGM . . . F 4 -30.064 -11.253 15.695 1 52.55 ? O3 SGM 501 B 1 HETATM 6 S S1 SGM . . . F 4 -27.605 -7.951 12.678 1 49.59 ? S1 SGM 501 B 1 # _model_server_stats.io_time_ms 117 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #