data_4EOM
#
_model_server_result.job_id            doTS5SUj6tyQLCpNp_5rgA 
_model_server_result.datetime_utc      '2024-11-05 15:36:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4eom 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":301}' 
#
_entry.id    4EOM 
#
_exptl.entry_id    4EOM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4EOM 
_cell.length_a            74.02 
_cell.length_b            134.04 
_cell.length_c            149 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4EOM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,J,K 1 1 
C,D,G,H,I,L,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TYR 163 A TYR 159 1_555 A N TPO 164 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 A C TPO 164 A TPO 160 1_555 A N HIS 165 A HIS 161 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.342 ? 
covale ? covale3 A C TPO 164 A TPO 160 1_555 A N HIS 165 A HIS 161 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 C C TYR 163 C TYR 159 1_555 C N TPO 164 C TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 C C TPO 164 C TPO 160 1_555 C N HIS 165 C HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
metalc ? metalc1 E O3G ATP . A ATP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc2 E O1A ATP . A ATP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc3 A OD1 ASN 136 A ASN 132 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc4 G O2B ATP . C ATP 301 1_555 H MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc5 C OD1 ASN 136 C ASN 132 1_555 H MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc6 A OD2 ASP 149 A ASP 145 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc7 E O1B ATP . A ATP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc8 D O GLN 29 D GLN 203 1_555 I MG MG . D MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc9 G O1A ATP . C ATP 301 1_555 H MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc10 C OD2 ASP 149 C ASP 145 1_555 H MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc11 D O ILE 32 D ILE 206 1_555 I MG MG . D MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
metalc ? metalc12 D O MET 26 D MET 200 1_555 I MG MG . D MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc13 F MG MG . A MG 302 1_555 J O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4EOM 
_atom_sites.fract_transf_matrix[1][1]    0.01351 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00746 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006711 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ATP A 1 301 1 ATP ATP . 
F 4 MG A 1 302 1 MG MG . 
G 3 ATP C 1 301 1 ATP ATP . 
H 4 MG C 1 302 1 MG MG . 
I 4 MG D 1 501 1 MG MG . 
J 5 HOH A 1 401 1 HOH HOH . 
J 5 HOH A 2 402 5 HOH HOH . 
J 5 HOH A 3 403 6 HOH HOH . 
J 5 HOH A 4 404 10 HOH HOH . 
J 5 HOH A 5 405 11 HOH HOH . 
J 5 HOH A 6 406 13 HOH HOH . 
J 5 HOH A 7 407 14 HOH HOH . 
J 5 HOH A 8 408 16 HOH HOH . 
J 5 HOH A 9 409 18 HOH HOH . 
J 5 HOH A 10 410 19 HOH HOH . 
J 5 HOH A 11 411 20 HOH HOH . 
J 5 HOH A 12 412 22 HOH HOH . 
J 5 HOH A 13 413 24 HOH HOH . 
J 5 HOH A 14 414 26 HOH HOH . 
J 5 HOH A 15 415 28 HOH HOH . 
J 5 HOH A 16 416 30 HOH HOH . 
J 5 HOH A 17 417 33 HOH HOH . 
J 5 HOH A 18 418 35 HOH HOH . 
J 5 HOH A 19 419 37 HOH HOH . 
J 5 HOH A 20 420 39 HOH HOH . 
J 5 HOH A 21 421 40 HOH HOH . 
J 5 HOH A 22 422 44 HOH HOH . 
J 5 HOH A 23 423 46 HOH HOH . 
J 5 HOH A 24 424 49 HOH HOH . 
J 5 HOH A 25 425 52 HOH HOH . 
J 5 HOH A 26 426 56 HOH HOH . 
J 5 HOH A 27 427 58 HOH HOH . 
J 5 HOH A 28 428 59 HOH HOH . 
J 5 HOH A 29 429 61 HOH HOH . 
J 5 HOH A 30 430 65 HOH HOH . 
J 5 HOH A 31 431 74 HOH HOH . 
J 5 HOH A 32 432 75 HOH HOH . 
J 5 HOH A 33 433 77 HOH HOH . 
J 5 HOH A 34 434 81 HOH HOH . 
J 5 HOH A 35 435 82 HOH HOH . 
J 5 HOH A 36 436 84 HOH HOH . 
J 5 HOH A 37 437 85 HOH HOH . 
J 5 HOH A 38 438 88 HOH HOH . 
J 5 HOH A 39 439 89 HOH HOH . 
J 5 HOH A 40 440 92 HOH HOH . 
J 5 HOH A 41 441 94 HOH HOH . 
J 5 HOH A 42 442 95 HOH HOH . 
J 5 HOH A 43 443 99 HOH HOH . 
J 5 HOH A 44 444 103 HOH HOH . 
J 5 HOH A 45 445 104 HOH HOH . 
J 5 HOH A 46 446 107 HOH HOH . 
J 5 HOH A 47 447 110 HOH HOH . 
J 5 HOH A 48 448 111 HOH HOH . 
J 5 HOH A 49 449 119 HOH HOH . 
J 5 HOH A 50 450 124 HOH HOH . 
J 5 HOH A 51 451 125 HOH HOH . 
J 5 HOH A 52 452 128 HOH HOH . 
J 5 HOH A 53 453 133 HOH HOH . 
J 5 HOH A 54 454 134 HOH HOH . 
J 5 HOH A 55 455 135 HOH HOH . 
J 5 HOH A 56 456 136 HOH HOH . 
J 5 HOH A 57 457 137 HOH HOH . 
J 5 HOH A 58 458 138 HOH HOH . 
J 5 HOH A 59 459 140 HOH HOH . 
J 5 HOH A 60 460 141 HOH HOH . 
J 5 HOH A 61 461 142 HOH HOH . 
J 5 HOH A 62 462 143 HOH HOH . 
J 5 HOH A 63 463 144 HOH HOH . 
J 5 HOH A 64 464 145 HOH HOH . 
J 5 HOH A 65 465 146 HOH HOH . 
K 5 HOH B 1 501 4 HOH HOH . 
K 5 HOH B 2 502 7 HOH HOH . 
K 5 HOH B 3 503 9 HOH HOH . 
K 5 HOH B 4 504 12 HOH HOH . 
K 5 HOH B 5 505 15 HOH HOH . 
K 5 HOH B 6 506 17 HOH HOH . 
K 5 HOH B 7 507 21 HOH HOH . 
K 5 HOH B 8 508 23 HOH HOH . 
K 5 HOH B 9 509 25 HOH HOH . 
K 5 HOH B 10 510 27 HOH HOH . 
K 5 HOH B 11 511 32 HOH HOH . 
K 5 HOH B 12 512 47 HOH HOH . 
K 5 HOH B 13 513 48 HOH HOH . 
K 5 HOH B 14 514 53 HOH HOH . 
K 5 HOH B 15 515 55 HOH HOH . 
K 5 HOH B 16 516 60 HOH HOH . 
K 5 HOH B 17 517 62 HOH HOH . 
K 5 HOH B 18 518 64 HOH HOH . 
K 5 HOH B 19 519 67 HOH HOH . 
K 5 HOH B 20 520 76 HOH HOH . 
K 5 HOH B 21 521 79 HOH HOH . 
K 5 HOH B 22 522 80 HOH HOH . 
K 5 HOH B 23 523 86 HOH HOH . 
K 5 HOH B 24 524 87 HOH HOH . 
K 5 HOH B 25 525 93 HOH HOH . 
K 5 HOH B 26 526 98 HOH HOH . 
K 5 HOH B 27 527 100 HOH HOH . 
K 5 HOH B 28 528 101 HOH HOH . 
K 5 HOH B 29 529 109 HOH HOH . 
K 5 HOH B 30 530 112 HOH HOH . 
K 5 HOH B 31 531 113 HOH HOH . 
K 5 HOH B 32 532 117 HOH HOH . 
K 5 HOH B 33 533 118 HOH HOH . 
K 5 HOH B 34 534 120 HOH HOH . 
K 5 HOH B 35 535 121 HOH HOH . 
K 5 HOH B 36 536 122 HOH HOH . 
K 5 HOH B 37 537 129 HOH HOH . 
K 5 HOH B 38 538 130 HOH HOH . 
K 5 HOH B 39 539 131 HOH HOH . 
K 5 HOH B 40 540 139 HOH HOH . 
K 5 HOH B 41 541 147 HOH HOH . 
L 5 HOH C 1 401 3 HOH HOH . 
L 5 HOH C 2 402 8 HOH HOH . 
L 5 HOH C 3 403 29 HOH HOH . 
L 5 HOH C 4 404 31 HOH HOH . 
L 5 HOH C 5 405 34 HOH HOH . 
L 5 HOH C 6 406 41 HOH HOH . 
L 5 HOH C 7 407 43 HOH HOH . 
L 5 HOH C 8 408 45 HOH HOH . 
L 5 HOH C 9 409 57 HOH HOH . 
L 5 HOH C 10 410 63 HOH HOH . 
L 5 HOH C 11 411 71 HOH HOH . 
L 5 HOH C 12 412 72 HOH HOH . 
L 5 HOH C 13 413 78 HOH HOH . 
L 5 HOH C 14 414 90 HOH HOH . 
L 5 HOH C 15 415 96 HOH HOH . 
L 5 HOH C 16 416 116 HOH HOH . 
M 5 HOH D 1 601 38 HOH HOH . 
M 5 HOH D 2 602 70 HOH HOH . 
M 5 HOH D 3 603 73 HOH HOH . 
M 5 HOH D 4 604 97 HOH HOH . 
M 5 HOH D 5 605 105 HOH HOH . 
M 5 HOH D 6 606 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . G 3 36.207 11.111 -38.612 0.3 66.71 ? PG ATP 301 C 1 
HETATM 2 O O1G ATP . . . G 3 35.791 10.518 -37.288 0.3 66.48 ? O1G ATP 301 C 1 
HETATM 3 O O2G ATP . . . G 3 37.659 11.512 -38.702 0.3 66.47 ? O2G ATP 301 C 1 
HETATM 4 O O3G ATP . . . G 3 35.697 10.346 -39.813 0.3 66.52 ? O3G ATP 301 C 1 
HETATM 5 P PB ATP . . . G 3 35.627 13.823 -37.837 1 67.87 ? PB ATP 301 C 1 
HETATM 6 O O1B ATP . . . G 3 34.597 14.813 -38.346 1 68.41 ? O1B ATP 301 C 1 
HETATM 7 O O2B ATP . . . G 3 37.094 14.185 -37.913 1 67.76 ? O2B ATP 301 C 1 
HETATM 8 O O3B ATP . . . G 3 35.381 12.487 -38.718 1 66.65 ? O3B ATP 301 C 1 
HETATM 9 P PA ATP . . . G 3 35.606 14.307 -34.973 1 62.95 ? PA ATP 301 C 1 
HETATM 10 O O1A ATP . . . G 3 36.981 14.937 -35.055 1 63.41 ? O1A ATP 301 C 1 
HETATM 11 O O2A ATP . . . G 3 35.28 13.446 -33.773 1 62.94 ? O2A ATP 301 C 1 
HETATM 12 O O3A ATP . . . G 3 35.236 13.439 -36.303 1 65.17 ? O3A ATP 301 C 1 
HETATM 13 O O5' ATP . . . G 3 34.568 15.538 -35.017 1 61.12 ? O5' ATP 301 C 1 
HETATM 14 C C5' ATP . . . G 3 34.946 16.74 -35.68 1 58.87 ? C5' ATP 301 C 1 
HETATM 15 C C4' ATP . . . G 3 34.598 17.97 -34.853 1 57.28 ? C4' ATP 301 C 1 
HETATM 16 O O4' ATP . . . G 3 33.38 17.795 -34.106 1 55.77 ? O4' ATP 301 C 1 
HETATM 17 C C3' ATP . . . G 3 35.695 18.317 -33.851 1 56.13 ? C3' ATP 301 C 1 
HETATM 18 O O3' ATP . . . G 3 36.678 19.201 -34.4 1 56.52 ? O3' ATP 301 C 1 
HETATM 19 C C2' ATP . . . G 3 34.924 18.99 -32.741 1 55.11 ? C2' ATP 301 C 1 
HETATM 20 O O2' ATP . . . G 3 34.796 20.394 -33.001 1 54.01 ? O2' ATP 301 C 1 
HETATM 21 C C1' ATP . . . G 3 33.553 18.323 -32.786 1 54.05 ? C1' ATP 301 C 1 
HETATM 22 N N9 ATP . . . G 3 33.505 17.227 -31.78 1 52.15 ? N9 ATP 301 C 1 
HETATM 23 C C8 ATP . . . G 3 33.782 15.915 -31.985 1 50.79 ? C8 ATP 301 C 1 
HETATM 24 N N7 ATP . . . G 3 33.629 15.19 -30.844 1 49.25 ? N7 ATP 301 C 1 
HETATM 25 C C5 ATP . . . G 3 33.237 16.048 -29.884 1 49.05 ? C5 ATP 301 C 1 
HETATM 26 C C6 ATP . . . G 3 32.903 15.949 -28.443 1 47.76 ? C6 ATP 301 C 1 
HETATM 27 N N6 ATP . . . G 3 32.965 14.754 -27.808 1 45.79 ? N6 ATP 301 C 1 
HETATM 28 N N1 ATP . . . G 3 32.545 17.082 -27.796 1 48.12 ? N1 ATP 301 C 1 
HETATM 29 C C2 ATP . . . G 3 32.49 18.278 -28.429 1 49.66 ? C2 ATP 301 C 1 
HETATM 30 N N3 ATP . . . G 3 32.784 18.454 -29.737 1 49.95 ? N3 ATP 301 C 1 
HETATM 31 C C4 ATP . . . G 3 33.158 17.39 -30.501 1 50.66 ? C4 ATP 301 C 1 
HETATM 32 H H8 ATP . . . G 3 34.055 15.54 -32.839 1 50.79 ? H8 ATP 301 C 1 
HETATM 33 H HN61 ATP . . . G 3 33.21 14.006 -28.268 1 45.79 ? HN61 ATP 301 C 1 
HETATM 34 H HN62 ATP . . . G 3 32.759 14.698 -26.921 1 45.79 ? HN62 ATP 301 C 1 
HETATM 35 H H2 ATP . . . G 3 32.223 19.058 -27.911 1 49.66 ? H2 ATP 301 C 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           35 
#