data_4EOM # _model_server_result.job_id VpgKC2Rnc4pZnQU09zyRQA _model_server_result.datetime_utc '2024-11-27 08:11:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eom # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 4EOM # _exptl.entry_id 4EOM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EOM _cell.length_a 74.02 _cell.length_b 134.04 _cell.length_c 149 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EOM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,J,K 1 1 C,D,G,H,I,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 163 A TYR 159 1_555 A N TPO 164 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C TPO 164 A TPO 160 1_555 A N HIS 165 A HIS 161 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.342 ? covale ? covale3 A C TPO 164 A TPO 160 1_555 A N HIS 165 A HIS 161 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.33 ? covale ? covale4 C C TYR 163 C TYR 159 1_555 C N TPO 164 C TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 C C TPO 164 C TPO 160 1_555 C N HIS 165 C HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OD1 ASN 136 A ASN 132 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc2 A OD2 ASP 149 A ASP 145 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc3 E O3G ATP . A ATP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc4 E O1A ATP . A ATP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc5 E O1B ATP . A ATP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc6 F MG MG . A MG 302 1_555 J O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc7 C OD1 ASN 136 C ASN 132 1_555 H MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc8 C OD2 ASP 149 C ASP 145 1_555 H MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc9 G O2B ATP . C ATP 301 1_555 H MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc10 G O1A ATP . C ATP 301 1_555 H MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc11 D O MET 26 D MET 200 1_555 I MG MG . D MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc12 D O GLN 29 D GLN 203 1_555 I MG MG . D MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc13 D O ILE 32 D ILE 206 1_555 I MG MG . D MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4EOM _atom_sites.fract_transf_matrix[1][1] 0.01351 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00746 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ATP A 1 301 1 ATP ATP . F 4 MG A 1 302 1 MG MG . G 3 ATP C 1 301 1 ATP ATP . H 4 MG C 1 302 1 MG MG . I 4 MG D 1 501 1 MG MG . J 5 HOH A 1 401 1 HOH HOH . J 5 HOH A 2 402 5 HOH HOH . J 5 HOH A 3 403 6 HOH HOH . J 5 HOH A 4 404 10 HOH HOH . J 5 HOH A 5 405 11 HOH HOH . J 5 HOH A 6 406 13 HOH HOH . J 5 HOH A 7 407 14 HOH HOH . J 5 HOH A 8 408 16 HOH HOH . J 5 HOH A 9 409 18 HOH HOH . J 5 HOH A 10 410 19 HOH HOH . J 5 HOH A 11 411 20 HOH HOH . J 5 HOH A 12 412 22 HOH HOH . J 5 HOH A 13 413 24 HOH HOH . J 5 HOH A 14 414 26 HOH HOH . J 5 HOH A 15 415 28 HOH HOH . J 5 HOH A 16 416 30 HOH HOH . J 5 HOH A 17 417 33 HOH HOH . J 5 HOH A 18 418 35 HOH HOH . J 5 HOH A 19 419 37 HOH HOH . J 5 HOH A 20 420 39 HOH HOH . J 5 HOH A 21 421 40 HOH HOH . J 5 HOH A 22 422 44 HOH HOH . J 5 HOH A 23 423 46 HOH HOH . J 5 HOH A 24 424 49 HOH HOH . J 5 HOH A 25 425 52 HOH HOH . J 5 HOH A 26 426 56 HOH HOH . J 5 HOH A 27 427 58 HOH HOH . J 5 HOH A 28 428 59 HOH HOH . J 5 HOH A 29 429 61 HOH HOH . J 5 HOH A 30 430 65 HOH HOH . J 5 HOH A 31 431 74 HOH HOH . J 5 HOH A 32 432 75 HOH HOH . J 5 HOH A 33 433 77 HOH HOH . J 5 HOH A 34 434 81 HOH HOH . J 5 HOH A 35 435 82 HOH HOH . J 5 HOH A 36 436 84 HOH HOH . J 5 HOH A 37 437 85 HOH HOH . J 5 HOH A 38 438 88 HOH HOH . J 5 HOH A 39 439 89 HOH HOH . J 5 HOH A 40 440 92 HOH HOH . J 5 HOH A 41 441 94 HOH HOH . J 5 HOH A 42 442 95 HOH HOH . J 5 HOH A 43 443 99 HOH HOH . J 5 HOH A 44 444 103 HOH HOH . J 5 HOH A 45 445 104 HOH HOH . J 5 HOH A 46 446 107 HOH HOH . J 5 HOH A 47 447 110 HOH HOH . J 5 HOH A 48 448 111 HOH HOH . J 5 HOH A 49 449 119 HOH HOH . J 5 HOH A 50 450 124 HOH HOH . J 5 HOH A 51 451 125 HOH HOH . J 5 HOH A 52 452 128 HOH HOH . J 5 HOH A 53 453 133 HOH HOH . J 5 HOH A 54 454 134 HOH HOH . J 5 HOH A 55 455 135 HOH HOH . J 5 HOH A 56 456 136 HOH HOH . J 5 HOH A 57 457 137 HOH HOH . J 5 HOH A 58 458 138 HOH HOH . J 5 HOH A 59 459 140 HOH HOH . J 5 HOH A 60 460 141 HOH HOH . J 5 HOH A 61 461 142 HOH HOH . J 5 HOH A 62 462 143 HOH HOH . J 5 HOH A 63 463 144 HOH HOH . J 5 HOH A 64 464 145 HOH HOH . J 5 HOH A 65 465 146 HOH HOH . K 5 HOH B 1 501 4 HOH HOH . K 5 HOH B 2 502 7 HOH HOH . K 5 HOH B 3 503 9 HOH HOH . K 5 HOH B 4 504 12 HOH HOH . K 5 HOH B 5 505 15 HOH HOH . K 5 HOH B 6 506 17 HOH HOH . K 5 HOH B 7 507 21 HOH HOH . K 5 HOH B 8 508 23 HOH HOH . K 5 HOH B 9 509 25 HOH HOH . K 5 HOH B 10 510 27 HOH HOH . K 5 HOH B 11 511 32 HOH HOH . K 5 HOH B 12 512 47 HOH HOH . K 5 HOH B 13 513 48 HOH HOH . K 5 HOH B 14 514 53 HOH HOH . K 5 HOH B 15 515 55 HOH HOH . K 5 HOH B 16 516 60 HOH HOH . K 5 HOH B 17 517 62 HOH HOH . K 5 HOH B 18 518 64 HOH HOH . K 5 HOH B 19 519 67 HOH HOH . K 5 HOH B 20 520 76 HOH HOH . K 5 HOH B 21 521 79 HOH HOH . K 5 HOH B 22 522 80 HOH HOH . K 5 HOH B 23 523 86 HOH HOH . K 5 HOH B 24 524 87 HOH HOH . K 5 HOH B 25 525 93 HOH HOH . K 5 HOH B 26 526 98 HOH HOH . K 5 HOH B 27 527 100 HOH HOH . K 5 HOH B 28 528 101 HOH HOH . K 5 HOH B 29 529 109 HOH HOH . K 5 HOH B 30 530 112 HOH HOH . K 5 HOH B 31 531 113 HOH HOH . K 5 HOH B 32 532 117 HOH HOH . K 5 HOH B 33 533 118 HOH HOH . K 5 HOH B 34 534 120 HOH HOH . K 5 HOH B 35 535 121 HOH HOH . K 5 HOH B 36 536 122 HOH HOH . K 5 HOH B 37 537 129 HOH HOH . K 5 HOH B 38 538 130 HOH HOH . K 5 HOH B 39 539 131 HOH HOH . K 5 HOH B 40 540 139 HOH HOH . K 5 HOH B 41 541 147 HOH HOH . L 5 HOH C 1 401 3 HOH HOH . L 5 HOH C 2 402 8 HOH HOH . L 5 HOH C 3 403 29 HOH HOH . L 5 HOH C 4 404 31 HOH HOH . L 5 HOH C 5 405 34 HOH HOH . L 5 HOH C 6 406 41 HOH HOH . L 5 HOH C 7 407 43 HOH HOH . L 5 HOH C 8 408 45 HOH HOH . L 5 HOH C 9 409 57 HOH HOH . L 5 HOH C 10 410 63 HOH HOH . L 5 HOH C 11 411 71 HOH HOH . L 5 HOH C 12 412 72 HOH HOH . L 5 HOH C 13 413 78 HOH HOH . L 5 HOH C 14 414 90 HOH HOH . L 5 HOH C 15 415 96 HOH HOH . L 5 HOH C 16 416 116 HOH HOH . M 5 HOH D 1 601 38 HOH HOH . M 5 HOH D 2 602 70 HOH HOH . M 5 HOH D 3 603 73 HOH HOH . M 5 HOH D 4 604 97 HOH HOH . M 5 HOH D 5 605 105 HOH HOH . M 5 HOH D 6 606 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 3 36.207 11.111 -38.612 0.3 66.71 ? PG ATP 301 C 1 HETATM 2 O O1G ATP . . . G 3 35.791 10.518 -37.288 0.3 66.48 ? O1G ATP 301 C 1 HETATM 3 O O2G ATP . . . G 3 37.659 11.512 -38.702 0.3 66.47 ? O2G ATP 301 C 1 HETATM 4 O O3G ATP . . . G 3 35.697 10.346 -39.813 0.3 66.52 ? O3G ATP 301 C 1 HETATM 5 P PB ATP . . . G 3 35.627 13.823 -37.837 1 67.87 ? PB ATP 301 C 1 HETATM 6 O O1B ATP . . . G 3 34.597 14.813 -38.346 1 68.41 ? O1B ATP 301 C 1 HETATM 7 O O2B ATP . . . G 3 37.094 14.185 -37.913 1 67.76 ? O2B ATP 301 C 1 HETATM 8 O O3B ATP . . . G 3 35.381 12.487 -38.718 1 66.65 ? O3B ATP 301 C 1 HETATM 9 P PA ATP . . . G 3 35.606 14.307 -34.973 1 62.95 ? PA ATP 301 C 1 HETATM 10 O O1A ATP . . . G 3 36.981 14.937 -35.055 1 63.41 ? O1A ATP 301 C 1 HETATM 11 O O2A ATP . . . G 3 35.28 13.446 -33.773 1 62.94 ? O2A ATP 301 C 1 HETATM 12 O O3A ATP . . . G 3 35.236 13.439 -36.303 1 65.17 ? O3A ATP 301 C 1 HETATM 13 O O5' ATP . . . G 3 34.568 15.538 -35.017 1 61.12 ? O5' ATP 301 C 1 HETATM 14 C C5' ATP . . . G 3 34.946 16.74 -35.68 1 58.87 ? C5' ATP 301 C 1 HETATM 15 C C4' ATP . . . G 3 34.598 17.97 -34.853 1 57.28 ? C4' ATP 301 C 1 HETATM 16 O O4' ATP . . . G 3 33.38 17.795 -34.106 1 55.77 ? O4' ATP 301 C 1 HETATM 17 C C3' ATP . . . G 3 35.695 18.317 -33.851 1 56.13 ? C3' ATP 301 C 1 HETATM 18 O O3' ATP . . . G 3 36.678 19.201 -34.4 1 56.52 ? O3' ATP 301 C 1 HETATM 19 C C2' ATP . . . G 3 34.924 18.99 -32.741 1 55.11 ? C2' ATP 301 C 1 HETATM 20 O O2' ATP . . . G 3 34.796 20.394 -33.001 1 54.01 ? O2' ATP 301 C 1 HETATM 21 C C1' ATP . . . G 3 33.553 18.323 -32.786 1 54.05 ? C1' ATP 301 C 1 HETATM 22 N N9 ATP . . . G 3 33.505 17.227 -31.78 1 52.15 ? N9 ATP 301 C 1 HETATM 23 C C8 ATP . . . G 3 33.782 15.915 -31.985 1 50.79 ? C8 ATP 301 C 1 HETATM 24 N N7 ATP . . . G 3 33.629 15.19 -30.844 1 49.25 ? N7 ATP 301 C 1 HETATM 25 C C5 ATP . . . G 3 33.237 16.048 -29.884 1 49.05 ? C5 ATP 301 C 1 HETATM 26 C C6 ATP . . . G 3 32.903 15.949 -28.443 1 47.76 ? C6 ATP 301 C 1 HETATM 27 N N6 ATP . . . G 3 32.965 14.754 -27.808 1 45.79 ? N6 ATP 301 C 1 HETATM 28 N N1 ATP . . . G 3 32.545 17.082 -27.796 1 48.12 ? N1 ATP 301 C 1 HETATM 29 C C2 ATP . . . G 3 32.49 18.278 -28.429 1 49.66 ? C2 ATP 301 C 1 HETATM 30 N N3 ATP . . . G 3 32.784 18.454 -29.737 1 49.95 ? N3 ATP 301 C 1 HETATM 31 C C4 ATP . . . G 3 33.158 17.39 -30.501 1 50.66 ? C4 ATP 301 C 1 HETATM 32 H H8 ATP . . . G 3 34.055 15.54 -32.839 1 50.79 ? H8 ATP 301 C 1 HETATM 33 H HN61 ATP . . . G 3 33.21 14.006 -28.268 1 45.79 ? HN61 ATP 301 C 1 HETATM 34 H HN62 ATP . . . G 3 32.759 14.698 -26.921 1 45.79 ? HN62 ATP 301 C 1 HETATM 35 H H2 ATP . . . G 3 32.223 19.058 -27.911 1 49.66 ? H2 ATP 301 C 1 # _model_server_stats.io_time_ms 132 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #