data_4EOM # _model_server_result.job_id NZ6DZtyobZZ2Toeqs1yIeA _model_server_result.datetime_utc '2024-11-05 15:25:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eom # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 4EOM # _exptl.entry_id 4EOM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EOM _cell.length_a 74.02 _cell.length_b 134.04 _cell.length_c 149 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EOM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,J,K 1 1 C,D,G,H,I,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 163 A TYR 159 1_555 A N TPO 164 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C TPO 164 A TPO 160 1_555 A N HIS 165 A HIS 161 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.342 ? covale ? covale3 A C TPO 164 A TPO 160 1_555 A N HIS 165 A HIS 161 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.33 ? covale ? covale4 C C TYR 163 C TYR 159 1_555 C N TPO 164 C TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 C C TPO 164 C TPO 160 1_555 C N HIS 165 C HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 E O3G ATP . A ATP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc2 E O1A ATP . A ATP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc3 A OD1 ASN 136 A ASN 132 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc4 G O2B ATP . C ATP 301 1_555 H MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc5 C OD1 ASN 136 C ASN 132 1_555 H MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc6 A OD2 ASP 149 A ASP 145 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc7 E O1B ATP . A ATP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc8 D O GLN 29 D GLN 203 1_555 I MG MG . D MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc9 G O1A ATP . C ATP 301 1_555 H MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc10 C OD2 ASP 149 C ASP 145 1_555 H MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc11 D O ILE 32 D ILE 206 1_555 I MG MG . D MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc12 D O MET 26 D MET 200 1_555 I MG MG . D MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc13 F MG MG . A MG 302 1_555 J O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4EOM _atom_sites.fract_transf_matrix[1][1] 0.01351 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00746 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ATP A 1 301 1 ATP ATP . F 4 MG A 1 302 1 MG MG . G 3 ATP C 1 301 1 ATP ATP . H 4 MG C 1 302 1 MG MG . I 4 MG D 1 501 1 MG MG . J 5 HOH A 1 401 1 HOH HOH . J 5 HOH A 2 402 5 HOH HOH . J 5 HOH A 3 403 6 HOH HOH . J 5 HOH A 4 404 10 HOH HOH . J 5 HOH A 5 405 11 HOH HOH . J 5 HOH A 6 406 13 HOH HOH . J 5 HOH A 7 407 14 HOH HOH . J 5 HOH A 8 408 16 HOH HOH . J 5 HOH A 9 409 18 HOH HOH . J 5 HOH A 10 410 19 HOH HOH . J 5 HOH A 11 411 20 HOH HOH . J 5 HOH A 12 412 22 HOH HOH . J 5 HOH A 13 413 24 HOH HOH . J 5 HOH A 14 414 26 HOH HOH . J 5 HOH A 15 415 28 HOH HOH . J 5 HOH A 16 416 30 HOH HOH . J 5 HOH A 17 417 33 HOH HOH . J 5 HOH A 18 418 35 HOH HOH . J 5 HOH A 19 419 37 HOH HOH . J 5 HOH A 20 420 39 HOH HOH . J 5 HOH A 21 421 40 HOH HOH . J 5 HOH A 22 422 44 HOH HOH . J 5 HOH A 23 423 46 HOH HOH . J 5 HOH A 24 424 49 HOH HOH . J 5 HOH A 25 425 52 HOH HOH . J 5 HOH A 26 426 56 HOH HOH . J 5 HOH A 27 427 58 HOH HOH . J 5 HOH A 28 428 59 HOH HOH . J 5 HOH A 29 429 61 HOH HOH . J 5 HOH A 30 430 65 HOH HOH . J 5 HOH A 31 431 74 HOH HOH . J 5 HOH A 32 432 75 HOH HOH . J 5 HOH A 33 433 77 HOH HOH . J 5 HOH A 34 434 81 HOH HOH . J 5 HOH A 35 435 82 HOH HOH . J 5 HOH A 36 436 84 HOH HOH . J 5 HOH A 37 437 85 HOH HOH . J 5 HOH A 38 438 88 HOH HOH . J 5 HOH A 39 439 89 HOH HOH . J 5 HOH A 40 440 92 HOH HOH . J 5 HOH A 41 441 94 HOH HOH . J 5 HOH A 42 442 95 HOH HOH . J 5 HOH A 43 443 99 HOH HOH . J 5 HOH A 44 444 103 HOH HOH . J 5 HOH A 45 445 104 HOH HOH . J 5 HOH A 46 446 107 HOH HOH . J 5 HOH A 47 447 110 HOH HOH . J 5 HOH A 48 448 111 HOH HOH . J 5 HOH A 49 449 119 HOH HOH . J 5 HOH A 50 450 124 HOH HOH . J 5 HOH A 51 451 125 HOH HOH . J 5 HOH A 52 452 128 HOH HOH . J 5 HOH A 53 453 133 HOH HOH . J 5 HOH A 54 454 134 HOH HOH . J 5 HOH A 55 455 135 HOH HOH . J 5 HOH A 56 456 136 HOH HOH . J 5 HOH A 57 457 137 HOH HOH . J 5 HOH A 58 458 138 HOH HOH . J 5 HOH A 59 459 140 HOH HOH . J 5 HOH A 60 460 141 HOH HOH . J 5 HOH A 61 461 142 HOH HOH . J 5 HOH A 62 462 143 HOH HOH . J 5 HOH A 63 463 144 HOH HOH . J 5 HOH A 64 464 145 HOH HOH . J 5 HOH A 65 465 146 HOH HOH . K 5 HOH B 1 501 4 HOH HOH . K 5 HOH B 2 502 7 HOH HOH . K 5 HOH B 3 503 9 HOH HOH . K 5 HOH B 4 504 12 HOH HOH . K 5 HOH B 5 505 15 HOH HOH . K 5 HOH B 6 506 17 HOH HOH . K 5 HOH B 7 507 21 HOH HOH . K 5 HOH B 8 508 23 HOH HOH . K 5 HOH B 9 509 25 HOH HOH . K 5 HOH B 10 510 27 HOH HOH . K 5 HOH B 11 511 32 HOH HOH . K 5 HOH B 12 512 47 HOH HOH . K 5 HOH B 13 513 48 HOH HOH . K 5 HOH B 14 514 53 HOH HOH . K 5 HOH B 15 515 55 HOH HOH . K 5 HOH B 16 516 60 HOH HOH . K 5 HOH B 17 517 62 HOH HOH . K 5 HOH B 18 518 64 HOH HOH . K 5 HOH B 19 519 67 HOH HOH . K 5 HOH B 20 520 76 HOH HOH . K 5 HOH B 21 521 79 HOH HOH . K 5 HOH B 22 522 80 HOH HOH . K 5 HOH B 23 523 86 HOH HOH . K 5 HOH B 24 524 87 HOH HOH . K 5 HOH B 25 525 93 HOH HOH . K 5 HOH B 26 526 98 HOH HOH . K 5 HOH B 27 527 100 HOH HOH . K 5 HOH B 28 528 101 HOH HOH . K 5 HOH B 29 529 109 HOH HOH . K 5 HOH B 30 530 112 HOH HOH . K 5 HOH B 31 531 113 HOH HOH . K 5 HOH B 32 532 117 HOH HOH . K 5 HOH B 33 533 118 HOH HOH . K 5 HOH B 34 534 120 HOH HOH . K 5 HOH B 35 535 121 HOH HOH . K 5 HOH B 36 536 122 HOH HOH . K 5 HOH B 37 537 129 HOH HOH . K 5 HOH B 38 538 130 HOH HOH . K 5 HOH B 39 539 131 HOH HOH . K 5 HOH B 40 540 139 HOH HOH . K 5 HOH B 41 541 147 HOH HOH . L 5 HOH C 1 401 3 HOH HOH . L 5 HOH C 2 402 8 HOH HOH . L 5 HOH C 3 403 29 HOH HOH . L 5 HOH C 4 404 31 HOH HOH . L 5 HOH C 5 405 34 HOH HOH . L 5 HOH C 6 406 41 HOH HOH . L 5 HOH C 7 407 43 HOH HOH . L 5 HOH C 8 408 45 HOH HOH . L 5 HOH C 9 409 57 HOH HOH . L 5 HOH C 10 410 63 HOH HOH . L 5 HOH C 11 411 71 HOH HOH . L 5 HOH C 12 412 72 HOH HOH . L 5 HOH C 13 413 78 HOH HOH . L 5 HOH C 14 414 90 HOH HOH . L 5 HOH C 15 415 96 HOH HOH . L 5 HOH C 16 416 116 HOH HOH . M 5 HOH D 1 601 38 HOH HOH . M 5 HOH D 2 602 70 HOH HOH . M 5 HOH D 3 603 73 HOH HOH . M 5 HOH D 4 604 97 HOH HOH . M 5 HOH D 5 605 105 HOH HOH . M 5 HOH D 6 606 123 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 4 _atom_site.Cartn_x 27.735 _atom_site.Cartn_y -30.166 _atom_site.Cartn_z -29.656 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.45 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 501 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #