data_4EP6 # _model_server_result.job_id RHNAZ16dqUTuECgytjpmhQ _model_server_result.datetime_utc '2024-10-19 12:38:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ep6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4EP6 # _exptl.entry_id 4EP6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EP6 _cell.length_a 136.12 _cell.length_b 136.12 _cell.length_c 75.13 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EP6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 343 A CYS 503 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N1 IMD . A IMD 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 166 n n CHA C4D HEM doub 167 n n CHA HHA HEM sing 168 n n CHB C4A HEM sing 169 n n CHB C1B HEM doub 170 n n CHB HHB HEM sing 171 n n CHC C4B HEM sing 172 n n CHC C1C HEM doub 173 n n CHC HHC HEM sing 174 n n CHD C4C HEM doub 175 n n CHD C1D HEM sing 176 n n CHD HHD HEM sing 177 n n C1A C2A HEM doub 178 n y C1A NA HEM sing 179 n y C2A C3A HEM sing 180 n y C2A CAA HEM sing 181 n n C3A C4A HEM doub 182 n y C3A CMA HEM sing 183 n n C4A NA HEM sing 184 n y CMA HMA HEM sing 185 n n CMA HMAA HEM sing 186 n n CMA HMAB HEM sing 187 n n CAA CBA HEM sing 188 n n CAA HAA HEM sing 189 n n CAA HAAA HEM sing 190 n n CBA CGA HEM sing 191 n n CBA HBA HEM sing 192 n n CBA HBAA HEM sing 193 n n CGA O1A HEM doub 194 n n CGA O2A HEM sing 195 n n C1B C2B HEM sing 196 n n C1B NB HEM sing 197 n n C2B C3B HEM doub 198 n n C2B CMB HEM sing 199 n n C3B C4B HEM sing 200 n n C3B CAB HEM sing 201 n n C4B NB HEM doub 202 n n CMB HMB HEM sing 203 n n CMB HMBA HEM sing 204 n n CMB HMBB HEM sing 205 n n CAB CBB HEM doub 206 n n CAB HAB HEM sing 207 n n CBB HBB HEM sing 208 n n CBB HBBA HEM sing 209 n n C1C C2C HEM sing 210 n y C1C NC HEM sing 211 n y C2C C3C HEM doub 212 n y C2C CMC HEM sing 213 n n C3C C4C HEM sing 214 n y C3C CAC HEM sing 215 n n C4C NC HEM sing 216 n y CMC HMC HEM sing 217 n n CMC HMCA HEM sing 218 n n CMC HMCB HEM sing 219 n n CAC CBC HEM doub 220 n n CAC HAC HEM sing 221 n n CBC HBC HEM sing 222 n n CBC HBCA HEM sing 223 n n C1D C2D HEM sing 224 n n C1D ND HEM doub 225 n n C2D C3D HEM doub 226 n n C2D CMD HEM sing 227 n n C3D C4D HEM sing 228 n n C3D CAD HEM sing 229 n n C4D ND HEM sing 230 n n CMD HMD HEM sing 231 n n CMD HMDA HEM sing 232 n n CMD HMDB HEM sing 233 n n CAD CBD HEM sing 234 n n CAD HAD HEM sing 235 n n CAD HADA HEM sing 236 n n CBD CGD HEM sing 237 n n CBD HBD HEM sing 238 n n CBD HBDA HEM sing 239 n n CGD O1D HEM doub 240 n n CGD O2D HEM sing 241 n n O2A H2A HEM sing 242 n n O2D H2D HEM sing 243 n n FE NA HEM sing 244 n n FE NB HEM sing 245 n n FE NC HEM sing 246 n n FE ND HEM sing 247 n n # _atom_sites.entry_id 4EP6 _atom_sites.fract_transf_matrix[1][1] 0.007346 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 1553 HEM HEM . C 3 IMD A 1 602 160 IMD IMD . D 4 1PE A 1 603 506 1PE 1PE . E 5 HOH A 1 701 2490 HOH HOH . E 5 HOH A 2 702 2543 HOH HOH . E 5 HOH A 3 703 2492 HOH HOH . E 5 HOH A 4 704 2624 HOH HOH . E 5 HOH A 5 705 2627 HOH HOH . E 5 HOH A 6 706 2656 HOH HOH . E 5 HOH A 7 707 2668 HOH HOH . E 5 HOH A 8 708 2678 HOH HOH . E 5 HOH A 9 709 2691 HOH HOH . E 5 HOH A 10 710 2698 HOH HOH . E 5 HOH A 11 711 2056 HOH HOH . E 5 HOH A 12 712 2345 HOH HOH . E 5 HOH A 13 713 2400 HOH HOH . E 5 HOH A 14 714 2491 HOH HOH . E 5 HOH A 15 715 2494 HOH HOH . E 5 HOH A 16 716 2486 HOH HOH . E 5 HOH A 17 717 2417 HOH HOH . E 5 HOH A 18 718 2158 HOH HOH . E 5 HOH A 19 719 2540 HOH HOH . E 5 HOH A 20 720 1 HOH HOH . E 5 HOH A 21 721 2 HOH HOH . E 5 HOH A 22 722 4 HOH HOH . E 5 HOH A 23 723 5 HOH HOH . E 5 HOH A 24 724 6 HOH HOH . E 5 HOH A 25 725 7 HOH HOH . E 5 HOH A 26 726 9 HOH HOH . E 5 HOH A 27 727 10 HOH HOH . E 5 HOH A 28 728 11 HOH HOH . E 5 HOH A 29 729 12 HOH HOH . E 5 HOH A 30 730 13 HOH HOH . E 5 HOH A 31 731 15 HOH HOH . E 5 HOH A 32 732 16 HOH HOH . E 5 HOH A 33 733 17 HOH HOH . E 5 HOH A 34 734 18 HOH HOH . E 5 HOH A 35 735 20 HOH HOH . E 5 HOH A 36 736 21 HOH HOH . E 5 HOH A 37 737 24 HOH HOH . E 5 HOH A 38 738 25 HOH HOH . E 5 HOH A 39 739 26 HOH HOH . E 5 HOH A 40 740 27 HOH HOH . E 5 HOH A 41 741 28 HOH HOH . E 5 HOH A 42 742 29 HOH HOH . E 5 HOH A 43 743 30 HOH HOH . E 5 HOH A 44 744 32 HOH HOH . E 5 HOH A 45 745 33 HOH HOH . E 5 HOH A 46 746 40 HOH HOH . E 5 HOH A 47 747 42 HOH HOH . E 5 HOH A 48 748 44 HOH HOH . E 5 HOH A 49 749 46 HOH HOH . E 5 HOH A 50 750 47 HOH HOH . E 5 HOH A 51 751 48 HOH HOH . E 5 HOH A 52 752 50 HOH HOH . E 5 HOH A 53 753 52 HOH HOH . E 5 HOH A 54 754 53 HOH HOH . E 5 HOH A 55 755 56 HOH HOH . E 5 HOH A 56 756 57 HOH HOH . E 5 HOH A 57 757 59 HOH HOH . E 5 HOH A 58 758 61 HOH HOH . E 5 HOH A 59 759 62 HOH HOH . E 5 HOH A 60 760 64 HOH HOH . E 5 HOH A 61 761 68 HOH HOH . E 5 HOH A 62 762 70 HOH HOH . E 5 HOH A 63 763 71 HOH HOH . E 5 HOH A 64 764 72 HOH HOH . E 5 HOH A 65 765 73 HOH HOH . E 5 HOH A 66 766 75 HOH HOH . E 5 HOH A 67 767 82 HOH HOH . E 5 HOH A 68 768 86 HOH HOH . E 5 HOH A 69 769 88 HOH HOH . E 5 HOH A 70 770 91 HOH HOH . E 5 HOH A 71 771 97 HOH HOH . E 5 HOH A 72 772 103 HOH HOH . E 5 HOH A 73 773 107 HOH HOH . E 5 HOH A 74 774 108 HOH HOH . E 5 HOH A 75 775 110 HOH HOH . E 5 HOH A 76 776 111 HOH HOH . E 5 HOH A 77 777 114 HOH HOH . E 5 HOH A 78 778 115 HOH HOH . E 5 HOH A 79 779 125 HOH HOH . E 5 HOH A 80 780 127 HOH HOH . E 5 HOH A 81 781 133 HOH HOH . E 5 HOH A 82 782 140 HOH HOH . E 5 HOH A 83 783 142 HOH HOH . E 5 HOH A 84 784 143 HOH HOH . E 5 HOH A 85 785 153 HOH HOH . E 5 HOH A 86 786 167 HOH HOH . E 5 HOH A 87 787 177 HOH HOH . E 5 HOH A 88 788 185 HOH HOH . E 5 HOH A 89 789 188 HOH HOH . E 5 HOH A 90 790 199 HOH HOH . E 5 HOH A 91 791 211 HOH HOH . E 5 HOH A 92 792 217 HOH HOH . E 5 HOH A 93 793 218 HOH HOH . E 5 HOH A 94 794 259 HOH HOH . E 5 HOH A 95 795 266 HOH HOH . E 5 HOH A 96 796 269 HOH HOH . E 5 HOH A 97 797 274 HOH HOH . E 5 HOH A 98 798 1 HOH HOH . E 5 HOH A 99 799 3 HOH HOH . E 5 HOH A 100 800 5 HOH HOH . E 5 HOH A 101 801 6 HOH HOH . E 5 HOH A 102 802 7 HOH HOH . E 5 HOH A 103 803 15 HOH HOH . E 5 HOH A 104 804 19 HOH HOH . E 5 HOH A 105 805 30 HOH HOH . E 5 HOH A 106 806 31 HOH HOH . E 5 HOH A 107 807 32 HOH HOH . E 5 HOH A 108 808 36 HOH HOH . E 5 HOH A 109 809 41 HOH HOH . E 5 HOH A 110 810 46 HOH HOH . E 5 HOH A 111 811 50 HOH HOH . E 5 HOH A 112 812 80 HOH HOH . E 5 HOH A 113 813 85 HOH HOH . E 5 HOH A 114 814 96 HOH HOH . E 5 HOH A 115 815 145 HOH HOH . E 5 HOH A 116 816 194 HOH HOH . E 5 HOH A 117 817 195 HOH HOH . E 5 HOH A 118 818 196 HOH HOH . E 5 HOH A 119 819 203 HOH HOH . E 5 HOH A 120 820 204 HOH HOH . E 5 HOH A 121 821 2 HOH HOH . E 5 HOH A 122 822 23 HOH HOH . E 5 HOH A 123 823 212 HOH HOH . E 5 HOH A 124 824 219 HOH HOH . E 5 HOH A 125 825 4 HOH HOH . E 5 HOH A 126 826 34 HOH HOH . E 5 HOH A 127 827 57 HOH HOH . E 5 HOH A 128 828 90 HOH HOH . E 5 HOH A 129 829 149 HOH HOH . E 5 HOH A 130 830 1 HOH HOH . E 5 HOH A 131 831 56 HOH HOH . E 5 HOH A 132 832 1 HOH HOH . E 5 HOH A 133 833 15 HOH HOH . E 5 HOH A 134 834 32 HOH HOH . E 5 HOH A 135 835 39 HOH HOH . E 5 HOH A 136 836 59 HOH HOH . E 5 HOH A 137 837 81 HOH HOH . E 5 HOH A 138 838 189 HOH HOH . E 5 HOH A 139 839 2338 HOH HOH . E 5 HOH A 140 840 2536 HOH HOH . E 5 HOH A 141 841 2576 HOH HOH . E 5 HOH A 142 842 2616 HOH HOH . E 5 HOH A 143 843 2628 HOH HOH . E 5 HOH A 144 844 2673 HOH HOH . E 5 HOH A 145 845 2418 HOH HOH . E 5 HOH A 146 846 2363 HOH HOH . E 5 HOH A 147 847 2127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 3.164 23.39 7.509 1 23.87 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 6.407 20.759 9.638 1 23.28 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 9.066 20.4 5.732 1 23.12 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 5.507 22.536 3.566 1 23.07 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 3.824 22.705 8.446 1 22.74 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 3.382 22.599 9.819 1 26.17 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 4.302 21.832 10.413 1 24.44 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 5.312 21.491 9.384 1 24.14 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 4.438 21.367 11.849 1 23.65 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 2.113 23.277 10.343 1 26.91 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 2.531 24.653 10.918 1 34.27 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 1.421 25.465 11.604 1 37.49 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 0.244 25.269 11.149 1 39.44 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 1.706 26.298 12.552 1 34.56 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 7.361 20.498 8.783 1 23.68 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 8.49 19.744 9.182 1 23.2 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 9.209 19.682 8.108 1 23.09 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 8.564 20.289 6.988 1 23.09 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 8.925 19.128 10.555 1 25.36 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 10.499 18.886 8.131 1 30.28 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 11.58 19.389 7.587 1 35.49 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 8.396 21.065 4.785 1 22.19 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 8.898 21.353 3.465 1 24.82 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 7.821 21.903 2.933 1 24.86 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 6.705 22.008 3.902 1 22.39 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 10.317 21.017 2.817 1 17.74 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 7.617 22.507 1.584 1 27.44 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 8.624 22.531 0.718 1 36.31 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 4.589 22.994 4.317 1 23.62 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 3.453 23.7 3.856 1 21.11 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 2.763 23.962 5.168 1 21.36 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 3.512 23.354 6.194 1 18.8 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 2.931 24.211 2.51 1 23.51 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 1.476 24.761 5.283 1 28.18 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 0.208 24.001 4.948 1 30.28 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 -1.027 24.773 5.395 1 32.17 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 -0.935 25.966 5.808 1 31.82 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 -2.135 24.147 5.35 1 35.59 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 5.017 22.061 8.236 1 22.37 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 7.388 20.816 7.411 1 23.29 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 7.065 21.456 4.981 1 24.3 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 4.623 22.787 5.695 1 23.15 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 6.062 21.788 6.539 1 26.77 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #