data_4EP6 # _model_server_result.job_id c30nkOh1Kb-zhtqrFFHxDg _model_server_result.datetime_utc '2024-10-19 12:23:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ep6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 4EP6 # _exptl.entry_id 4EP6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EP6 _cell.length_a 136.12 _cell.length_b 136.12 _cell.length_c 75.13 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EP6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 343 A CYS 503 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N1 IMD . A IMD 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 4EP6 _atom_sites.fract_transf_matrix[1][1] 0.007346 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 1553 HEM HEM . C 3 IMD A 1 602 160 IMD IMD . D 4 1PE A 1 603 506 1PE 1PE . E 5 HOH A 1 701 2490 HOH HOH . E 5 HOH A 2 702 2543 HOH HOH . E 5 HOH A 3 703 2492 HOH HOH . E 5 HOH A 4 704 2624 HOH HOH . E 5 HOH A 5 705 2627 HOH HOH . E 5 HOH A 6 706 2656 HOH HOH . E 5 HOH A 7 707 2668 HOH HOH . E 5 HOH A 8 708 2678 HOH HOH . E 5 HOH A 9 709 2691 HOH HOH . E 5 HOH A 10 710 2698 HOH HOH . E 5 HOH A 11 711 2056 HOH HOH . E 5 HOH A 12 712 2345 HOH HOH . E 5 HOH A 13 713 2400 HOH HOH . E 5 HOH A 14 714 2491 HOH HOH . E 5 HOH A 15 715 2494 HOH HOH . E 5 HOH A 16 716 2486 HOH HOH . E 5 HOH A 17 717 2417 HOH HOH . E 5 HOH A 18 718 2158 HOH HOH . E 5 HOH A 19 719 2540 HOH HOH . E 5 HOH A 20 720 1 HOH HOH . E 5 HOH A 21 721 2 HOH HOH . E 5 HOH A 22 722 4 HOH HOH . E 5 HOH A 23 723 5 HOH HOH . E 5 HOH A 24 724 6 HOH HOH . E 5 HOH A 25 725 7 HOH HOH . E 5 HOH A 26 726 9 HOH HOH . E 5 HOH A 27 727 10 HOH HOH . E 5 HOH A 28 728 11 HOH HOH . E 5 HOH A 29 729 12 HOH HOH . E 5 HOH A 30 730 13 HOH HOH . E 5 HOH A 31 731 15 HOH HOH . E 5 HOH A 32 732 16 HOH HOH . E 5 HOH A 33 733 17 HOH HOH . E 5 HOH A 34 734 18 HOH HOH . E 5 HOH A 35 735 20 HOH HOH . E 5 HOH A 36 736 21 HOH HOH . E 5 HOH A 37 737 24 HOH HOH . E 5 HOH A 38 738 25 HOH HOH . E 5 HOH A 39 739 26 HOH HOH . E 5 HOH A 40 740 27 HOH HOH . E 5 HOH A 41 741 28 HOH HOH . E 5 HOH A 42 742 29 HOH HOH . E 5 HOH A 43 743 30 HOH HOH . E 5 HOH A 44 744 32 HOH HOH . E 5 HOH A 45 745 33 HOH HOH . E 5 HOH A 46 746 40 HOH HOH . E 5 HOH A 47 747 42 HOH HOH . E 5 HOH A 48 748 44 HOH HOH . E 5 HOH A 49 749 46 HOH HOH . E 5 HOH A 50 750 47 HOH HOH . E 5 HOH A 51 751 48 HOH HOH . E 5 HOH A 52 752 50 HOH HOH . E 5 HOH A 53 753 52 HOH HOH . E 5 HOH A 54 754 53 HOH HOH . E 5 HOH A 55 755 56 HOH HOH . E 5 HOH A 56 756 57 HOH HOH . E 5 HOH A 57 757 59 HOH HOH . E 5 HOH A 58 758 61 HOH HOH . E 5 HOH A 59 759 62 HOH HOH . E 5 HOH A 60 760 64 HOH HOH . E 5 HOH A 61 761 68 HOH HOH . E 5 HOH A 62 762 70 HOH HOH . E 5 HOH A 63 763 71 HOH HOH . E 5 HOH A 64 764 72 HOH HOH . E 5 HOH A 65 765 73 HOH HOH . E 5 HOH A 66 766 75 HOH HOH . E 5 HOH A 67 767 82 HOH HOH . E 5 HOH A 68 768 86 HOH HOH . E 5 HOH A 69 769 88 HOH HOH . E 5 HOH A 70 770 91 HOH HOH . E 5 HOH A 71 771 97 HOH HOH . E 5 HOH A 72 772 103 HOH HOH . E 5 HOH A 73 773 107 HOH HOH . E 5 HOH A 74 774 108 HOH HOH . E 5 HOH A 75 775 110 HOH HOH . E 5 HOH A 76 776 111 HOH HOH . E 5 HOH A 77 777 114 HOH HOH . E 5 HOH A 78 778 115 HOH HOH . E 5 HOH A 79 779 125 HOH HOH . E 5 HOH A 80 780 127 HOH HOH . E 5 HOH A 81 781 133 HOH HOH . E 5 HOH A 82 782 140 HOH HOH . E 5 HOH A 83 783 142 HOH HOH . E 5 HOH A 84 784 143 HOH HOH . E 5 HOH A 85 785 153 HOH HOH . E 5 HOH A 86 786 167 HOH HOH . E 5 HOH A 87 787 177 HOH HOH . E 5 HOH A 88 788 185 HOH HOH . E 5 HOH A 89 789 188 HOH HOH . E 5 HOH A 90 790 199 HOH HOH . E 5 HOH A 91 791 211 HOH HOH . E 5 HOH A 92 792 217 HOH HOH . E 5 HOH A 93 793 218 HOH HOH . E 5 HOH A 94 794 259 HOH HOH . E 5 HOH A 95 795 266 HOH HOH . E 5 HOH A 96 796 269 HOH HOH . E 5 HOH A 97 797 274 HOH HOH . E 5 HOH A 98 798 1 HOH HOH . E 5 HOH A 99 799 3 HOH HOH . E 5 HOH A 100 800 5 HOH HOH . E 5 HOH A 101 801 6 HOH HOH . E 5 HOH A 102 802 7 HOH HOH . E 5 HOH A 103 803 15 HOH HOH . E 5 HOH A 104 804 19 HOH HOH . E 5 HOH A 105 805 30 HOH HOH . E 5 HOH A 106 806 31 HOH HOH . E 5 HOH A 107 807 32 HOH HOH . E 5 HOH A 108 808 36 HOH HOH . E 5 HOH A 109 809 41 HOH HOH . E 5 HOH A 110 810 46 HOH HOH . E 5 HOH A 111 811 50 HOH HOH . E 5 HOH A 112 812 80 HOH HOH . E 5 HOH A 113 813 85 HOH HOH . E 5 HOH A 114 814 96 HOH HOH . E 5 HOH A 115 815 145 HOH HOH . E 5 HOH A 116 816 194 HOH HOH . E 5 HOH A 117 817 195 HOH HOH . E 5 HOH A 118 818 196 HOH HOH . E 5 HOH A 119 819 203 HOH HOH . E 5 HOH A 120 820 204 HOH HOH . E 5 HOH A 121 821 2 HOH HOH . E 5 HOH A 122 822 23 HOH HOH . E 5 HOH A 123 823 212 HOH HOH . E 5 HOH A 124 824 219 HOH HOH . E 5 HOH A 125 825 4 HOH HOH . E 5 HOH A 126 826 34 HOH HOH . E 5 HOH A 127 827 57 HOH HOH . E 5 HOH A 128 828 90 HOH HOH . E 5 HOH A 129 829 149 HOH HOH . E 5 HOH A 130 830 1 HOH HOH . E 5 HOH A 131 831 56 HOH HOH . E 5 HOH A 132 832 1 HOH HOH . E 5 HOH A 133 833 15 HOH HOH . E 5 HOH A 134 834 32 HOH HOH . E 5 HOH A 135 835 39 HOH HOH . E 5 HOH A 136 836 59 HOH HOH . E 5 HOH A 137 837 81 HOH HOH . E 5 HOH A 138 838 189 HOH HOH . E 5 HOH A 139 839 2338 HOH HOH . E 5 HOH A 140 840 2536 HOH HOH . E 5 HOH A 141 841 2576 HOH HOH . E 5 HOH A 142 842 2616 HOH HOH . E 5 HOH A 143 843 2628 HOH HOH . E 5 HOH A 144 844 2673 HOH HOH . E 5 HOH A 145 845 2418 HOH HOH . E 5 HOH A 146 846 2363 HOH HOH . E 5 HOH A 147 847 2127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . D 4 -8.723 15.758 3.57 1 34.71 ? OH2 1PE 603 A 1 HETATM 2 C C12 1PE . . . D 4 -8.436 14.816 4.624 1 35.44 ? C12 1PE 603 A 1 HETATM 3 C C22 1PE . . . D 4 -8.402 15.335 6.059 1 33.78 ? C22 1PE 603 A 1 HETATM 4 O OH3 1PE . . . D 4 -7.324 16.303 6.305 1 38.58 ? OH3 1PE 603 A 1 HETATM 5 C C13 1PE . . . D 4 -6.163 17.825 7.872 1 41.01 ? C13 1PE 603 A 1 HETATM 6 C C23 1PE . . . D 4 -7.146 16.658 7.713 1 38.84 ? C23 1PE 603 A 1 HETATM 7 O OH4 1PE . . . D 4 -5.142 17.764 6.814 1 43.15 ? OH4 1PE 603 A 1 HETATM 8 C C14 1PE . . . D 4 -2.829 18.092 6.165 1 39.81 ? C14 1PE 603 A 1 HETATM 9 C C24 1PE . . . D 4 -4.016 18.638 6.966 1 40.09 ? C24 1PE 603 A 1 HETATM 10 O OH5 1PE . . . D 4 -1.629 18.822 6.429 1 39.85 ? OH5 1PE 603 A 1 HETATM 11 C C15 1PE . . . D 4 0.662 19.375 5.98 1 34.27 ? C15 1PE 603 A 1 HETATM 12 C C25 1PE . . . D 4 -0.661 18.934 5.332 1 35.06 ? C25 1PE 603 A 1 HETATM 13 O OH6 1PE . . . D 4 0.807 18.877 7.389 1 24.06 ? OH6 1PE 603 A 1 HETATM 14 C C16 1PE . . . D 4 1.765 19.43 9.731 1 23.48 ? C16 1PE 603 A 1 HETATM 15 C C26 1PE . . . D 4 1.831 19.594 8.132 1 24.88 ? C26 1PE 603 A 1 HETATM 16 O OH7 1PE . . . D 4 0.518 18.843 10.127 1 28.1 ? OH7 1PE 603 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 16 #