data_4EP7 # _model_server_result.job_id e1vwrdJ_ebVSJ2XYBrvXeg _model_server_result.datetime_utc '2025-06-22 23:43:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ep7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 4EP7 # _exptl.entry_id 4EP7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.17 _cell.angle_gamma 90 _cell.entry_id 4EP7 _cell.length_a 53.49 _cell.length_b 76.86 _cell.length_c 81.86 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EP7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,L 1 1 B,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O3G UTP . A UTP 501 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc2 C O1A UTP . A UTP 501 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc3 E MG MG . A MG 503 1_555 L O HOH . A HOH 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc4 E MG MG . A MG 503 1_555 L O HOH . A HOH 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc5 E MG MG . A MG 503 1_555 L O HOH . A HOH 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc6 G MG MG . A MG 505 1_555 L O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc7 B OD2 ASP 64 B ASP 101 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc8 B OD2 ASP 66 B ASP 103 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc9 H O3G UTP . B UTP 501 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc10 H O1B UTP . B UTP 501 1_555 J MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc11 J MG MG . B MG 503 1_555 M O HOH . B HOH 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc12 K MG MG . B MG 504 1_555 M O HOH . B HOH 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4EP7 _atom_sites.fract_transf_matrix[1][1] 0.018695 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000382 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UTP A 1 501 501 UTP UTP . D 3 MG A 1 502 1 MG MG . E 3 MG A 1 503 503 MG MG . F 3 MG A 1 504 3 MG MG . G 3 MG A 1 505 7 MG MG . H 2 UTP B 1 501 501 UTP UTP . I 3 MG B 1 502 4 MG MG . J 3 MG B 1 503 503 MG MG . K 3 MG B 1 504 6 MG MG . L 4 HOH A 1 601 1 HOH HOH . L 4 HOH A 2 602 2 HOH HOH . L 4 HOH A 3 603 6 HOH HOH . L 4 HOH A 4 604 7 HOH HOH . L 4 HOH A 5 605 9 HOH HOH . L 4 HOH A 6 606 11 HOH HOH . L 4 HOH A 7 607 13 HOH HOH . L 4 HOH A 8 608 16 HOH HOH . L 4 HOH A 9 609 17 HOH HOH . L 4 HOH A 10 610 18 HOH HOH . L 4 HOH A 11 611 19 HOH HOH . L 4 HOH A 12 612 20 HOH HOH . L 4 HOH A 13 613 21 HOH HOH . L 4 HOH A 14 614 22 HOH HOH . L 4 HOH A 15 615 25 HOH HOH . L 4 HOH A 16 616 26 HOH HOH . L 4 HOH A 17 617 27 HOH HOH . L 4 HOH A 18 618 31 HOH HOH . L 4 HOH A 19 619 34 HOH HOH . L 4 HOH A 20 620 37 HOH HOH . L 4 HOH A 21 621 39 HOH HOH . L 4 HOH A 22 622 42 HOH HOH . L 4 HOH A 23 623 43 HOH HOH . L 4 HOH A 24 624 44 HOH HOH . L 4 HOH A 25 625 45 HOH HOH . L 4 HOH A 26 626 51 HOH HOH . L 4 HOH A 27 627 57 HOH HOH . L 4 HOH A 28 628 58 HOH HOH . L 4 HOH A 29 629 59 HOH HOH . L 4 HOH A 30 630 60 HOH HOH . L 4 HOH A 31 631 61 HOH HOH . L 4 HOH A 32 632 62 HOH HOH . L 4 HOH A 33 633 63 HOH HOH . L 4 HOH A 34 634 64 HOH HOH . L 4 HOH A 35 635 66 HOH HOH . L 4 HOH A 36 636 68 HOH HOH . L 4 HOH A 37 637 69 HOH HOH . L 4 HOH A 38 638 72 HOH HOH . L 4 HOH A 39 639 74 HOH HOH . L 4 HOH A 40 640 75 HOH HOH . L 4 HOH A 41 641 78 HOH HOH . L 4 HOH A 42 642 81 HOH HOH . L 4 HOH A 43 643 82 HOH HOH . L 4 HOH A 44 644 84 HOH HOH . L 4 HOH A 45 645 85 HOH HOH . L 4 HOH A 46 646 87 HOH HOH . L 4 HOH A 47 647 89 HOH HOH . L 4 HOH A 48 648 91 HOH HOH . L 4 HOH A 49 649 92 HOH HOH . L 4 HOH A 50 650 94 HOH HOH . L 4 HOH A 51 651 101 HOH HOH . L 4 HOH A 52 652 102 HOH HOH . L 4 HOH A 53 653 103 HOH HOH . L 4 HOH A 54 654 112 HOH HOH . L 4 HOH A 55 655 115 HOH HOH . L 4 HOH A 56 656 116 HOH HOH . L 4 HOH A 57 657 119 HOH HOH . L 4 HOH A 58 658 121 HOH HOH . L 4 HOH A 59 659 123 HOH HOH . L 4 HOH A 60 660 126 HOH HOH . L 4 HOH A 61 661 131 HOH HOH . L 4 HOH A 62 662 132 HOH HOH . L 4 HOH A 63 663 135 HOH HOH . L 4 HOH A 64 664 137 HOH HOH . L 4 HOH A 65 665 139 HOH HOH . L 4 HOH A 66 666 140 HOH HOH . L 4 HOH A 67 667 142 HOH HOH . L 4 HOH A 68 668 143 HOH HOH . L 4 HOH A 69 669 144 HOH HOH . L 4 HOH A 70 670 145 HOH HOH . L 4 HOH A 71 671 146 HOH HOH . L 4 HOH A 72 672 147 HOH HOH . L 4 HOH A 73 673 149 HOH HOH . L 4 HOH A 74 674 150 HOH HOH . L 4 HOH A 75 675 153 HOH HOH . L 4 HOH A 76 676 155 HOH HOH . L 4 HOH A 77 677 157 HOH HOH . L 4 HOH A 78 678 158 HOH HOH . L 4 HOH A 79 679 160 HOH HOH . L 4 HOH A 80 680 165 HOH HOH . L 4 HOH A 81 681 167 HOH HOH . L 4 HOH A 82 682 169 HOH HOH . L 4 HOH A 83 683 170 HOH HOH . L 4 HOH A 84 684 171 HOH HOH . L 4 HOH A 85 685 685 HOH HOH . L 4 HOH A 86 686 174 HOH HOH . L 4 HOH A 87 687 175 HOH HOH . L 4 HOH A 88 688 176 HOH HOH . L 4 HOH A 89 689 179 HOH HOH . L 4 HOH A 90 690 180 HOH HOH . L 4 HOH A 91 691 182 HOH HOH . L 4 HOH A 92 692 183 HOH HOH . L 4 HOH A 93 693 184 HOH HOH . L 4 HOH A 94 694 185 HOH HOH . L 4 HOH A 95 695 186 HOH HOH . L 4 HOH A 96 696 188 HOH HOH . L 4 HOH A 97 697 189 HOH HOH . L 4 HOH A 98 698 190 HOH HOH . L 4 HOH A 99 699 191 HOH HOH . L 4 HOH A 100 700 192 HOH HOH . L 4 HOH A 101 701 193 HOH HOH . L 4 HOH A 102 702 198 HOH HOH . L 4 HOH A 103 703 199 HOH HOH . L 4 HOH A 104 704 201 HOH HOH . L 4 HOH A 105 705 202 HOH HOH . L 4 HOH A 106 706 204 HOH HOH . L 4 HOH A 107 707 205 HOH HOH . L 4 HOH A 108 708 206 HOH HOH . L 4 HOH A 109 709 207 HOH HOH . L 4 HOH A 110 710 208 HOH HOH . L 4 HOH A 111 711 209 HOH HOH . L 4 HOH A 112 712 212 HOH HOH . L 4 HOH A 113 713 714 HOH HOH . L 4 HOH A 114 714 218 HOH HOH . L 4 HOH A 115 715 219 HOH HOH . L 4 HOH A 116 716 220 HOH HOH . L 4 HOH A 117 717 221 HOH HOH . L 4 HOH A 118 718 222 HOH HOH . L 4 HOH A 119 719 223 HOH HOH . L 4 HOH A 120 720 224 HOH HOH . L 4 HOH A 121 721 227 HOH HOH . L 4 HOH A 122 722 228 HOH HOH . L 4 HOH A 123 723 229 HOH HOH . L 4 HOH A 124 724 232 HOH HOH . L 4 HOH A 125 725 726 HOH HOH . L 4 HOH A 126 726 242 HOH HOH . M 4 HOH B 1 601 3 HOH HOH . M 4 HOH B 2 602 4 HOH HOH . M 4 HOH B 3 603 5 HOH HOH . M 4 HOH B 4 604 8 HOH HOH . M 4 HOH B 5 605 10 HOH HOH . M 4 HOH B 6 606 12 HOH HOH . M 4 HOH B 7 607 14 HOH HOH . M 4 HOH B 8 608 15 HOH HOH . M 4 HOH B 9 609 23 HOH HOH . M 4 HOH B 10 610 24 HOH HOH . M 4 HOH B 11 611 611 HOH HOH . M 4 HOH B 12 612 29 HOH HOH . M 4 HOH B 13 613 30 HOH HOH . M 4 HOH B 14 614 32 HOH HOH . M 4 HOH B 15 615 33 HOH HOH . M 4 HOH B 16 616 35 HOH HOH . M 4 HOH B 17 617 36 HOH HOH . M 4 HOH B 18 618 38 HOH HOH . M 4 HOH B 19 619 40 HOH HOH . M 4 HOH B 20 620 41 HOH HOH . M 4 HOH B 21 621 46 HOH HOH . M 4 HOH B 22 622 47 HOH HOH . M 4 HOH B 23 623 48 HOH HOH . M 4 HOH B 24 624 49 HOH HOH . M 4 HOH B 25 625 50 HOH HOH . M 4 HOH B 26 626 52 HOH HOH . M 4 HOH B 27 627 53 HOH HOH . M 4 HOH B 28 628 54 HOH HOH . M 4 HOH B 29 629 55 HOH HOH . M 4 HOH B 30 630 56 HOH HOH . M 4 HOH B 31 631 65 HOH HOH . M 4 HOH B 32 632 67 HOH HOH . M 4 HOH B 33 633 70 HOH HOH . M 4 HOH B 34 634 71 HOH HOH . M 4 HOH B 35 635 73 HOH HOH . M 4 HOH B 36 636 76 HOH HOH . M 4 HOH B 37 637 77 HOH HOH . M 4 HOH B 38 638 79 HOH HOH . M 4 HOH B 39 639 80 HOH HOH . M 4 HOH B 40 640 83 HOH HOH . M 4 HOH B 41 641 86 HOH HOH . M 4 HOH B 42 642 88 HOH HOH . M 4 HOH B 43 643 90 HOH HOH . M 4 HOH B 44 644 93 HOH HOH . M 4 HOH B 45 645 95 HOH HOH . M 4 HOH B 46 646 96 HOH HOH . M 4 HOH B 47 647 97 HOH HOH . M 4 HOH B 48 648 98 HOH HOH . M 4 HOH B 49 649 99 HOH HOH . M 4 HOH B 50 650 100 HOH HOH . M 4 HOH B 51 651 104 HOH HOH . M 4 HOH B 52 652 105 HOH HOH . M 4 HOH B 53 653 106 HOH HOH . M 4 HOH B 54 654 107 HOH HOH . M 4 HOH B 55 655 108 HOH HOH . M 4 HOH B 56 656 109 HOH HOH . M 4 HOH B 57 657 110 HOH HOH . M 4 HOH B 58 658 111 HOH HOH . M 4 HOH B 59 659 113 HOH HOH . M 4 HOH B 60 660 114 HOH HOH . M 4 HOH B 61 661 117 HOH HOH . M 4 HOH B 62 662 118 HOH HOH . M 4 HOH B 63 663 120 HOH HOH . M 4 HOH B 64 664 122 HOH HOH . M 4 HOH B 65 665 124 HOH HOH . M 4 HOH B 66 666 125 HOH HOH . M 4 HOH B 67 667 127 HOH HOH . M 4 HOH B 68 668 128 HOH HOH . M 4 HOH B 69 669 129 HOH HOH . M 4 HOH B 70 670 130 HOH HOH . M 4 HOH B 71 671 133 HOH HOH . M 4 HOH B 72 672 136 HOH HOH . M 4 HOH B 73 673 138 HOH HOH . M 4 HOH B 74 674 141 HOH HOH . M 4 HOH B 75 675 148 HOH HOH . M 4 HOH B 76 676 151 HOH HOH . M 4 HOH B 77 677 152 HOH HOH . M 4 HOH B 78 678 154 HOH HOH . M 4 HOH B 79 679 156 HOH HOH . M 4 HOH B 80 680 159 HOH HOH . M 4 HOH B 81 681 161 HOH HOH . M 4 HOH B 82 682 162 HOH HOH . M 4 HOH B 83 683 163 HOH HOH . M 4 HOH B 84 684 164 HOH HOH . M 4 HOH B 85 685 166 HOH HOH . M 4 HOH B 86 686 168 HOH HOH . M 4 HOH B 87 687 172 HOH HOH . M 4 HOH B 88 688 177 HOH HOH . M 4 HOH B 89 689 178 HOH HOH . M 4 HOH B 90 690 187 HOH HOH . M 4 HOH B 91 691 194 HOH HOH . M 4 HOH B 92 692 195 HOH HOH . M 4 HOH B 93 693 196 HOH HOH . M 4 HOH B 94 694 197 HOH HOH . M 4 HOH B 95 695 200 HOH HOH . M 4 HOH B 96 696 203 HOH HOH . M 4 HOH B 97 697 210 HOH HOH . M 4 HOH B 98 698 211 HOH HOH . M 4 HOH B 99 699 213 HOH HOH . M 4 HOH B 100 700 215 HOH HOH . M 4 HOH B 101 701 216 HOH HOH . M 4 HOH B 102 702 217 HOH HOH . M 4 HOH B 103 703 225 HOH HOH . M 4 HOH B 104 704 226 HOH HOH . M 4 HOH B 105 705 230 HOH HOH . M 4 HOH B 106 706 231 HOH HOH . M 4 HOH B 107 707 235 HOH HOH . M 4 HOH B 108 708 236 HOH HOH . M 4 HOH B 109 709 237 HOH HOH . M 4 HOH B 110 710 239 HOH HOH . M 4 HOH B 111 711 240 HOH HOH . M 4 HOH B 112 712 243 HOH HOH . M 4 HOH B 113 713 244 HOH HOH . M 4 HOH B 114 714 245 HOH HOH . M 4 HOH B 115 715 246 HOH HOH . M 4 HOH B 116 716 716 HOH HOH . M 4 HOH B 117 717 248 HOH HOH . M 4 HOH B 118 718 249 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 7.435 _atom_site.Cartn_y 19.627 _atom_site.Cartn_z 12.306 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 503 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #