data_4EPM # _model_server_result.job_id eVgkvg3X_pnX8mUY79oXXg _model_server_result.datetime_utc '2024-10-14 07:25:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4epm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4EPM # _exptl.entry_id 4EPM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EPM _cell.length_a 59.765 _cell.length_b 65.769 _cell.length_c 154.972 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EPM _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 65.769 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 4EPM _atom_sites.fract_transf_matrix[1][1] 0.016732 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015205 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 601 1 AMP AMP . C 3 SO4 A 1 602 1 SO4 SO4 . D 4 HOH A 1 701 1 HOH HOH . D 4 HOH A 2 702 2 HOH HOH . D 4 HOH A 3 703 3 HOH HOH . D 4 HOH A 4 704 4 HOH HOH . D 4 HOH A 5 705 5 HOH HOH . D 4 HOH A 6 706 6 HOH HOH . D 4 HOH A 7 707 7 HOH HOH . D 4 HOH A 8 708 8 HOH HOH . D 4 HOH A 9 709 9 HOH HOH . D 4 HOH A 10 710 10 HOH HOH . D 4 HOH A 11 711 11 HOH HOH . D 4 HOH A 12 712 12 HOH HOH . D 4 HOH A 13 713 13 HOH HOH . D 4 HOH A 14 714 14 HOH HOH . D 4 HOH A 15 715 15 HOH HOH . D 4 HOH A 16 716 16 HOH HOH . D 4 HOH A 17 717 17 HOH HOH . D 4 HOH A 18 718 18 HOH HOH . D 4 HOH A 19 719 19 HOH HOH . D 4 HOH A 20 720 20 HOH HOH . D 4 HOH A 21 721 21 HOH HOH . D 4 HOH A 22 722 22 HOH HOH . D 4 HOH A 23 723 23 HOH HOH . D 4 HOH A 24 724 24 HOH HOH . D 4 HOH A 25 725 25 HOH HOH . D 4 HOH A 26 726 26 HOH HOH . D 4 HOH A 27 727 27 HOH HOH . D 4 HOH A 28 728 28 HOH HOH . D 4 HOH A 29 729 29 HOH HOH . D 4 HOH A 30 730 30 HOH HOH . D 4 HOH A 31 731 31 HOH HOH . D 4 HOH A 32 732 32 HOH HOH . D 4 HOH A 33 733 33 HOH HOH . D 4 HOH A 34 734 34 HOH HOH . D 4 HOH A 35 735 35 HOH HOH . D 4 HOH A 36 736 36 HOH HOH . D 4 HOH A 37 737 37 HOH HOH . D 4 HOH A 38 738 38 HOH HOH . D 4 HOH A 39 739 39 HOH HOH . D 4 HOH A 40 740 40 HOH HOH . D 4 HOH A 41 741 41 HOH HOH . D 4 HOH A 42 742 42 HOH HOH . D 4 HOH A 43 743 43 HOH HOH . D 4 HOH A 44 744 44 HOH HOH . D 4 HOH A 45 745 45 HOH HOH . D 4 HOH A 46 746 46 HOH HOH . D 4 HOH A 47 747 47 HOH HOH . D 4 HOH A 48 748 48 HOH HOH . D 4 HOH A 49 749 49 HOH HOH . D 4 HOH A 50 750 50 HOH HOH . D 4 HOH A 51 751 51 HOH HOH . D 4 HOH A 52 752 52 HOH HOH . D 4 HOH A 53 753 53 HOH HOH . D 4 HOH A 54 754 54 HOH HOH . D 4 HOH A 55 755 55 HOH HOH . D 4 HOH A 56 756 56 HOH HOH . D 4 HOH A 57 757 57 HOH HOH . D 4 HOH A 58 758 58 HOH HOH . D 4 HOH A 59 759 59 HOH HOH . D 4 HOH A 60 760 60 HOH HOH . D 4 HOH A 61 761 61 HOH HOH . D 4 HOH A 62 762 62 HOH HOH . D 4 HOH A 63 763 63 HOH HOH . D 4 HOH A 64 764 64 HOH HOH . D 4 HOH A 65 765 65 HOH HOH . D 4 HOH A 66 766 66 HOH HOH . D 4 HOH A 67 767 67 HOH HOH . D 4 HOH A 68 768 68 HOH HOH . D 4 HOH A 69 769 69 HOH HOH . D 4 HOH A 70 770 70 HOH HOH . D 4 HOH A 71 771 71 HOH HOH . D 4 HOH A 72 772 72 HOH HOH . D 4 HOH A 73 773 73 HOH HOH . D 4 HOH A 74 774 74 HOH HOH . D 4 HOH A 75 775 75 HOH HOH . D 4 HOH A 76 776 76 HOH HOH . D 4 HOH A 77 777 77 HOH HOH . D 4 HOH A 78 778 78 HOH HOH . D 4 HOH A 79 779 79 HOH HOH . D 4 HOH A 80 780 80 HOH HOH . D 4 HOH A 81 781 81 HOH HOH . D 4 HOH A 82 782 82 HOH HOH . D 4 HOH A 83 783 83 HOH HOH . D 4 HOH A 84 784 84 HOH HOH . D 4 HOH A 85 785 85 HOH HOH . D 4 HOH A 86 786 86 HOH HOH . D 4 HOH A 87 787 87 HOH HOH . D 4 HOH A 88 788 88 HOH HOH . D 4 HOH A 89 789 89 HOH HOH . D 4 HOH A 90 790 90 HOH HOH . D 4 HOH A 91 791 91 HOH HOH . D 4 HOH A 92 792 92 HOH HOH . D 4 HOH A 93 793 93 HOH HOH . D 4 HOH A 94 794 94 HOH HOH . D 4 HOH A 95 795 95 HOH HOH . D 4 HOH A 96 796 96 HOH HOH . D 4 HOH A 97 797 97 HOH HOH . D 4 HOH A 98 798 98 HOH HOH . D 4 HOH A 99 799 99 HOH HOH . D 4 HOH A 100 800 100 HOH HOH . D 4 HOH A 101 801 101 HOH HOH . D 4 HOH A 102 802 102 HOH HOH . D 4 HOH A 103 803 103 HOH HOH . D 4 HOH A 104 804 104 HOH HOH . D 4 HOH A 105 805 105 HOH HOH . D 4 HOH A 106 806 106 HOH HOH . D 4 HOH A 107 807 107 HOH HOH . D 4 HOH A 108 808 108 HOH HOH . D 4 HOH A 109 809 109 HOH HOH . D 4 HOH A 110 810 110 HOH HOH . D 4 HOH A 111 811 111 HOH HOH . D 4 HOH A 112 812 112 HOH HOH . D 4 HOH A 113 813 113 HOH HOH . D 4 HOH A 114 814 114 HOH HOH . D 4 HOH A 115 815 115 HOH HOH . D 4 HOH A 116 816 116 HOH HOH . D 4 HOH A 117 817 117 HOH HOH . D 4 HOH A 118 818 118 HOH HOH . D 4 HOH A 119 819 119 HOH HOH . D 4 HOH A 120 820 120 HOH HOH . D 4 HOH A 121 821 121 HOH HOH . D 4 HOH A 122 822 122 HOH HOH . D 4 HOH A 123 823 123 HOH HOH . D 4 HOH A 124 824 124 HOH HOH . D 4 HOH A 125 825 125 HOH HOH . D 4 HOH A 126 826 126 HOH HOH . D 4 HOH A 127 827 127 HOH HOH . D 4 HOH A 128 828 128 HOH HOH . D 4 HOH A 129 829 129 HOH HOH . D 4 HOH A 130 830 130 HOH HOH . D 4 HOH A 131 831 131 HOH HOH . D 4 HOH A 132 832 132 HOH HOH . D 4 HOH A 133 833 133 HOH HOH . D 4 HOH A 134 834 134 HOH HOH . D 4 HOH A 135 835 135 HOH HOH . D 4 HOH A 136 836 136 HOH HOH . D 4 HOH A 137 837 137 HOH HOH . D 4 HOH A 138 838 138 HOH HOH . D 4 HOH A 139 839 139 HOH HOH . D 4 HOH A 140 840 140 HOH HOH . D 4 HOH A 141 841 141 HOH HOH . D 4 HOH A 142 842 142 HOH HOH . D 4 HOH A 143 843 143 HOH HOH . D 4 HOH A 144 844 144 HOH HOH . D 4 HOH A 145 845 145 HOH HOH . D 4 HOH A 146 846 146 HOH HOH . D 4 HOH A 147 847 147 HOH HOH . D 4 HOH A 148 848 148 HOH HOH . D 4 HOH A 149 849 149 HOH HOH . D 4 HOH A 150 850 150 HOH HOH . D 4 HOH A 151 851 151 HOH HOH . D 4 HOH A 152 852 152 HOH HOH . D 4 HOH A 153 853 153 HOH HOH . D 4 HOH A 154 854 154 HOH HOH . D 4 HOH A 155 855 155 HOH HOH . D 4 HOH A 156 856 156 HOH HOH . D 4 HOH A 157 857 157 HOH HOH . D 4 HOH A 158 858 158 HOH HOH . D 4 HOH A 159 859 159 HOH HOH . D 4 HOH A 160 860 160 HOH HOH . D 4 HOH A 161 861 161 HOH HOH . D 4 HOH A 162 862 162 HOH HOH . D 4 HOH A 163 863 163 HOH HOH . D 4 HOH A 164 864 164 HOH HOH . D 4 HOH A 165 865 165 HOH HOH . D 4 HOH A 166 866 166 HOH HOH . D 4 HOH A 167 867 167 HOH HOH . D 4 HOH A 168 868 168 HOH HOH . D 4 HOH A 169 869 169 HOH HOH . D 4 HOH A 170 870 170 HOH HOH . D 4 HOH A 171 871 171 HOH HOH . D 4 HOH A 172 872 172 HOH HOH . D 4 HOH A 173 873 173 HOH HOH . D 4 HOH A 174 874 174 HOH HOH . D 4 HOH A 175 875 175 HOH HOH . D 4 HOH A 176 876 176 HOH HOH . D 4 HOH A 177 877 177 HOH HOH . D 4 HOH A 178 878 178 HOH HOH . D 4 HOH A 179 879 179 HOH HOH . D 4 HOH A 180 880 180 HOH HOH . D 4 HOH A 181 881 181 HOH HOH . D 4 HOH A 182 882 182 HOH HOH . D 4 HOH A 183 883 183 HOH HOH . D 4 HOH A 184 884 184 HOH HOH . D 4 HOH A 185 885 185 HOH HOH . D 4 HOH A 186 886 186 HOH HOH . D 4 HOH A 187 887 187 HOH HOH . D 4 HOH A 188 888 188 HOH HOH . D 4 HOH A 189 889 189 HOH HOH . D 4 HOH A 190 890 190 HOH HOH . D 4 HOH A 191 891 191 HOH HOH . D 4 HOH A 192 892 192 HOH HOH . D 4 HOH A 193 893 193 HOH HOH . D 4 HOH A 194 894 194 HOH HOH . D 4 HOH A 195 895 195 HOH HOH . D 4 HOH A 196 896 196 HOH HOH . D 4 HOH A 197 897 197 HOH HOH . D 4 HOH A 198 898 198 HOH HOH . D 4 HOH A 199 899 199 HOH HOH . D 4 HOH A 200 900 200 HOH HOH . D 4 HOH A 201 901 201 HOH HOH . D 4 HOH A 202 902 202 HOH HOH . D 4 HOH A 203 903 203 HOH HOH . D 4 HOH A 204 904 204 HOH HOH . D 4 HOH A 205 905 205 HOH HOH . D 4 HOH A 206 906 206 HOH HOH . D 4 HOH A 207 907 207 HOH HOH . D 4 HOH A 208 908 208 HOH HOH . D 4 HOH A 209 909 209 HOH HOH . D 4 HOH A 210 910 210 HOH HOH . D 4 HOH A 211 911 211 HOH HOH . D 4 HOH A 212 912 212 HOH HOH . D 4 HOH A 213 913 213 HOH HOH . D 4 HOH A 214 914 214 HOH HOH . D 4 HOH A 215 915 215 HOH HOH . D 4 HOH A 216 916 216 HOH HOH . D 4 HOH A 217 917 217 HOH HOH . D 4 HOH A 218 918 218 HOH HOH . D 4 HOH A 219 919 219 HOH HOH . D 4 HOH A 220 920 220 HOH HOH . D 4 HOH A 221 921 221 HOH HOH . D 4 HOH A 222 922 222 HOH HOH . D 4 HOH A 223 923 223 HOH HOH . D 4 HOH A 224 924 224 HOH HOH . D 4 HOH A 225 925 225 HOH HOH . D 4 HOH A 226 926 226 HOH HOH . D 4 HOH A 227 927 227 HOH HOH . D 4 HOH A 228 928 228 HOH HOH . D 4 HOH A 229 929 229 HOH HOH . D 4 HOH A 230 930 230 HOH HOH . D 4 HOH A 231 931 231 HOH HOH . D 4 HOH A 232 932 232 HOH HOH . D 4 HOH A 233 933 233 HOH HOH . D 4 HOH A 234 934 234 HOH HOH . D 4 HOH A 235 935 235 HOH HOH . D 4 HOH A 236 936 236 HOH HOH . D 4 HOH A 237 937 237 HOH HOH . D 4 HOH A 238 938 238 HOH HOH . D 4 HOH A 239 939 239 HOH HOH . D 4 HOH A 240 940 240 HOH HOH . D 4 HOH A 241 941 241 HOH HOH . D 4 HOH A 242 942 242 HOH HOH . D 4 HOH A 243 943 243 HOH HOH . D 4 HOH A 244 944 244 HOH HOH . D 4 HOH A 245 945 245 HOH HOH . D 4 HOH A 246 946 246 HOH HOH . D 4 HOH A 247 947 247 HOH HOH . D 4 HOH A 248 948 248 HOH HOH . D 4 HOH A 249 949 249 HOH HOH . D 4 HOH A 250 950 250 HOH HOH . D 4 HOH A 251 951 251 HOH HOH . D 4 HOH A 252 952 252 HOH HOH . D 4 HOH A 253 953 253 HOH HOH . D 4 HOH A 254 954 254 HOH HOH . D 4 HOH A 255 955 255 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 -22.053 32.324 -23.29 1 36.5 ? P AMP 601 A 1 HETATM 2 O O1P AMP . . . B 2 -23.196 32.843 -24.127 1 38.33 ? O1P AMP 601 A 1 HETATM 3 O O2P AMP . . . B 2 -20.661 32.785 -23.628 1 41.01 ? O2P AMP 601 A 1 HETATM 4 O O3P AMP . . . B 2 -22.384 32.542 -21.828 1 35.64 ? O3P AMP 601 A 1 HETATM 5 O O5' AMP . . . B 2 -22.087 30.746 -23.282 1 38.39 ? O5' AMP 601 A 1 HETATM 6 C C5' AMP . . . B 2 -22.442 30.042 -24.449 1 31.08 ? C5' AMP 601 A 1 HETATM 7 C C4' AMP . . . B 2 -22.219 28.569 -24.293 1 27.46 ? C4' AMP 601 A 1 HETATM 8 O O4' AMP . . . B 2 -23.422 27.945 -23.77 1 23.08 ? O4' AMP 601 A 1 HETATM 9 C C3' AMP . . . B 2 -21.946 27.816 -25.579 1 29.51 ? C3' AMP 601 A 1 HETATM 10 O O3' AMP . . . B 2 -20.608 27.95 -26.023 1 31.56 ? O3' AMP 601 A 1 HETATM 11 C C2' AMP . . . B 2 -22.343 26.395 -25.214 1 27.09 ? C2' AMP 601 A 1 HETATM 12 O O2' AMP . . . B 2 -21.338 25.782 -24.424 1 31.25 ? O2' AMP 601 A 1 HETATM 13 C C1' AMP . . . B 2 -23.572 26.657 -24.332 1 25.93 ? C1' AMP 601 A 1 HETATM 14 N N9 AMP . . . B 2 -24.8 26.647 -25.136 1 26.87 ? N9 AMP 601 A 1 HETATM 15 C C8 AMP . . . B 2 -25.402 27.725 -25.677 1 25.73 ? C8 AMP 601 A 1 HETATM 16 N N7 AMP . . . B 2 -26.48 27.346 -26.398 1 24.66 ? N7 AMP 601 A 1 HETATM 17 C C5 AMP . . . B 2 -26.558 26.001 -26.33 1 25.84 ? C5 AMP 601 A 1 HETATM 18 C C6 AMP . . . B 2 -27.452 24.952 -26.872 1 28.39 ? C6 AMP 601 A 1 HETATM 19 N N6 AMP . . . B 2 -28.504 25.29 -27.648 1 24.48 ? N6 AMP 601 A 1 HETATM 20 N N1 AMP . . . B 2 -27.183 23.66 -26.558 1 28.21 ? N1 AMP 601 A 1 HETATM 21 C C2 AMP . . . B 2 -26.127 23.318 -25.793 1 32.3 ? C2 AMP 601 A 1 HETATM 22 N N3 AMP . . . B 2 -25.267 24.212 -25.266 1 27.71 ? N3 AMP 601 A 1 HETATM 23 C C4 AMP . . . B 2 -25.44 25.544 -25.5 1 26.63 ? C4 AMP 601 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #