data_4EPQ # _model_server_result.job_id kDTv7V-odSIqO11L0lzcQQ _model_server_result.datetime_utc '2024-11-23 23:06:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4epq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4EPQ # _exptl.entry_id 4EPQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 527.828 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-{(5Z)-5-[5-chloro-1-(2,6-dichlorobenzyl)-2-oxo-1,2-dihydro-3H-indol-3-ylidene]-4-oxo-2-thioxo-1,3-thiazolidin-3-yl}propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EPQ _cell.length_a 80.68 _cell.length_b 80.68 _cell.length_c 89.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EPQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H13 Cl3 N2 O4 S2' _chem_comp.formula_weight 527.828 _chem_comp.id 0RR _chem_comp.mon_nstd_flag . _chem_comp.name '3-{(5Z)-5-[5-chloro-1-(2,6-dichlorobenzyl)-2-oxo-1,2-dihydro-3H-indol-3-ylidene]-4-oxo-2-thioxo-1,3-thiazolidin-3-yl}propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAD CAS 0RR doub 1 n n CAS CAO 0RR sing 2 n n CAS OAA 0RR sing 3 n n CAO CAP 0RR sing 4 n n CLG CAU 0RR sing 5 n n CAQ NBF 0RR sing 6 n n CAQ CAW 0RR sing 7 n n CAM CAL 0RR doub 8 n y CAM CBD 0RR sing 9 n y CAL CAT 0RR sing 10 n y NBF CBD 0RR sing 11 n n NBF CAY 0RR sing 12 n n CBD CBC 0RR doub 13 n y CAT CLF 0RR sing 14 n n CAT CAN 0RR doub 15 n y CAY OAC 0RR doub 16 n n CAY CBB 0RR sing 17 n n CBC CAN 0RR sing 18 n y CBC CBB 0RR sing 19 n n CBB CBA 0RR doub 20 z n SAR CBA 0RR sing 21 n n SAR CAZ 0RR sing 22 n n CBA CAX 0RR sing 23 n n CAX OAB 0RR doub 24 n n CAX NBE 0RR sing 25 n n CAZ NBE 0RR sing 26 n n CAZ SAE 0RR doub 27 n n NBE CAP 0RR sing 28 n n CAW CAU 0RR doub 29 n y CAW CAV 0RR sing 30 n y CAU CAJ 0RR sing 31 n y CLH CAV 0RR sing 32 n n CAV CAK 0RR doub 33 n y CAJ CAI 0RR doub 34 n y CAK CAI 0RR sing 35 n y OAA H1 0RR sing 36 n n CAO H2 0RR sing 37 n n CAO H3 0RR sing 38 n n CAP H4 0RR sing 39 n n CAP H5 0RR sing 40 n n CAN H6 0RR sing 41 n n CAL H7 0RR sing 42 n n CAM H8 0RR sing 43 n n CAQ H9 0RR sing 44 n n CAQ H10 0RR sing 45 n n CAJ H11 0RR sing 46 n n CAI H12 0RR sing 47 n n CAK H13 0RR sing 48 n n # _atom_sites.entry_id 4EPQ _atom_sites.fract_transf_matrix[1][1] 0.012395 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012395 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0RR A 1 501 501 0RR 0RR . C 3 HOH A 1 601 1 HOH HOH . C 3 HOH A 2 602 2 HOH HOH . C 3 HOH A 3 603 3 HOH HOH . C 3 HOH A 4 604 4 HOH HOH . C 3 HOH A 5 605 5 HOH HOH . C 3 HOH A 6 606 6 HOH HOH . C 3 HOH A 7 607 7 HOH HOH . C 3 HOH A 8 608 8 HOH HOH . C 3 HOH A 9 609 9 HOH HOH . C 3 HOH A 10 610 10 HOH HOH . C 3 HOH A 11 611 11 HOH HOH . C 3 HOH A 12 612 12 HOH HOH . C 3 HOH A 13 613 13 HOH HOH . C 3 HOH A 14 614 14 HOH HOH . C 3 HOH A 15 615 15 HOH HOH . C 3 HOH A 16 616 16 HOH HOH . C 3 HOH A 17 617 17 HOH HOH . C 3 HOH A 18 618 18 HOH HOH . C 3 HOH A 19 619 19 HOH HOH . C 3 HOH A 20 620 20 HOH HOH . C 3 HOH A 21 621 21 HOH HOH . C 3 HOH A 22 622 22 HOH HOH . C 3 HOH A 23 623 23 HOH HOH . C 3 HOH A 24 624 24 HOH HOH . C 3 HOH A 25 625 25 HOH HOH . C 3 HOH A 26 626 26 HOH HOH . C 3 HOH A 27 627 27 HOH HOH . C 3 HOH A 28 628 28 HOH HOH . C 3 HOH A 29 629 29 HOH HOH . C 3 HOH A 30 630 30 HOH HOH . C 3 HOH A 31 631 31 HOH HOH . C 3 HOH A 32 632 32 HOH HOH . C 3 HOH A 33 633 33 HOH HOH . C 3 HOH A 34 634 34 HOH HOH . C 3 HOH A 35 635 35 HOH HOH . C 3 HOH A 36 636 36 HOH HOH . C 3 HOH A 37 637 37 HOH HOH . C 3 HOH A 38 638 38 HOH HOH . C 3 HOH A 39 639 39 HOH HOH . C 3 HOH A 40 640 40 HOH HOH . C 3 HOH A 41 641 41 HOH HOH . C 3 HOH A 42 642 42 HOH HOH . C 3 HOH A 43 643 43 HOH HOH . C 3 HOH A 44 644 44 HOH HOH . C 3 HOH A 45 645 45 HOH HOH . C 3 HOH A 46 646 46 HOH HOH . C 3 HOH A 47 647 47 HOH HOH . C 3 HOH A 48 648 48 HOH HOH . C 3 HOH A 49 649 49 HOH HOH . C 3 HOH A 50 650 50 HOH HOH . C 3 HOH A 51 651 51 HOH HOH . C 3 HOH A 52 652 52 HOH HOH . C 3 HOH A 53 653 53 HOH HOH . C 3 HOH A 54 654 54 HOH HOH . C 3 HOH A 55 655 55 HOH HOH . C 3 HOH A 56 656 56 HOH HOH . C 3 HOH A 57 657 57 HOH HOH . C 3 HOH A 58 658 58 HOH HOH . C 3 HOH A 59 659 59 HOH HOH . C 3 HOH A 60 660 60 HOH HOH . C 3 HOH A 61 661 61 HOH HOH . C 3 HOH A 62 662 62 HOH HOH . C 3 HOH A 63 663 63 HOH HOH . C 3 HOH A 64 664 64 HOH HOH . C 3 HOH A 65 665 65 HOH HOH . C 3 HOH A 66 666 66 HOH HOH . C 3 HOH A 67 667 67 HOH HOH . C 3 HOH A 68 668 68 HOH HOH . C 3 HOH A 69 669 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA 0RR . . . B 2 9.105 11.35 1.14 1 73.64 ? OAA 0RR 501 A 1 HETATM 2 C CAS 0RR . . . B 2 7.994 11.204 0.543 1 78.11 ? CAS 0RR 501 A 1 HETATM 3 O OAD 0RR . . . B 2 7.552 11.928 -0.377 1 67.25 ? OAD 0RR 501 A 1 HETATM 4 C CAO 0RR . . . B 2 7.04 10.049 0.914 1 73.54 ? CAO 0RR 501 A 1 HETATM 5 C CAP 0RR . . . B 2 6.868 9.695 2.412 1 62.78 ? CAP 0RR 501 A 1 HETATM 6 N NBE 0RR . . . B 2 5.855 8.625 2.354 1 66.99 ? NBE 0RR 501 A 1 HETATM 7 C CAX 0RR . . . B 2 4.562 9.015 2.255 1 62.75 ? CAX 0RR 501 A 1 HETATM 8 O OAB 0RR . . . B 2 4.301 10.222 2.29 1 46.41 ? OAB 0RR 501 A 1 HETATM 9 C CAZ 0RR . . . B 2 6.02 7.291 2.3 1 76.67 ? CAZ 0RR 501 A 1 HETATM 10 S SAE 0RR . . . B 2 7.526 6.437 2.376 1 62.06 ? SAE 0RR 501 A 1 HETATM 11 S SAR 0RR . . . B 2 4.556 6.53 2.178 1 64.33 ? SAR 0RR 501 A 1 HETATM 12 C CBA 0RR . . . B 2 3.649 8.001 2.182 1 71.31 ? CBA 0RR 501 A 1 HETATM 13 C CBB 0RR . . . B 2 2.292 8.016 2.033 1 72.44 ? CBB 0RR 501 A 1 HETATM 14 C CAY 0RR . . . B 2 1.552 6.899 1.882 1 76.32 ? CAY 0RR 501 A 1 HETATM 15 O OAC 0RR . . . B 2 1.982 5.745 1.925 1 71.88 ? OAC 0RR 501 A 1 HETATM 16 C CBC 0RR . . . B 2 1.442 9.061 1.904 1 69.84 ? CBC 0RR 501 A 1 HETATM 17 C CAN 0RR . . . B 2 1.584 10.398 1.944 1 60.99 ? CAN 0RR 501 A 1 HETATM 18 C CAT 0RR . . . B 2 0.458 11.224 1.79 1 75.55 ? CAT 0RR 501 A 1 HETATM 19 CL CLF 0RR . . . B 2 0.54 12.934 1.811 1 59.43 ? CLF 0RR 501 A 1 HETATM 20 C CAL 0RR . . . B 2 -0.799 10.67 1.6 1 76.41 ? CAL 0RR 501 A 1 HETATM 21 C CAM 0RR . . . B 2 -0.879 9.293 1.569 1 72.7 ? CAM 0RR 501 A 1 HETATM 22 C CBD 0RR . . . B 2 0.204 8.535 1.717 1 77.01 ? CBD 0RR 501 A 1 HETATM 23 N NBF 0RR . . . B 2 0.264 7.206 1.7 1 83.3 ? NBF 0RR 501 A 1 HETATM 24 C CAQ 0RR . . . B 2 -0.986 6.338 1.517 1 102.97 ? CAQ 0RR 501 A 1 HETATM 25 C CAW 0RR . . . B 2 -1.812 6.415 2.659 1 128.09 ? CAW 0RR 501 A 1 HETATM 26 C CAU 0RR . . . B 2 -2.968 7.219 2.716 1 137.82 ? CAU 0RR 501 A 1 HETATM 27 CL CLG 0RR . . . B 2 -3.512 8.207 1.345 1 200.59 ? CLG 0RR 501 A 1 HETATM 28 C CAJ 0RR . . . B 2 -3.729 7.255 3.887 1 136.28 ? CAJ 0RR 501 A 1 HETATM 29 C CAI 0RR . . . B 2 -3.366 6.506 5.001 1 132.34 ? CAI 0RR 501 A 1 HETATM 30 C CAK 0RR . . . B 2 -2.227 5.713 4.94 1 131.24 ? CAK 0RR 501 A 1 HETATM 31 C CAV 0RR . . . B 2 -1.459 5.663 3.779 1 131.58 ? CAV 0RR 501 A 1 HETATM 32 CL CLH 0RR . . . B 2 -0.04 4.665 3.72 1 239.56 ? CLH 0RR 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #