data_4EPW # _model_server_result.job_id ipjYQERep4LQNuJWX2prsA _model_server_result.datetime_utc '2024-11-27 04:39:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4epw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 4EPW # _exptl.entry_id 4EPW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.355 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4-hydroxypiperidin-1-yl)(1H-indol-3-yl)methanethione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EPW _cell.length_a 39.219 _cell.length_b 41.924 _cell.length_c 91.448 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EPW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc2 B O2B GDP . A GDP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc3 C MG MG . A MG 202 1_555 E O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc4 C MG MG . A MG 202 1_555 E O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc5 C MG MG . A MG 202 1_555 E O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc6 C MG MG . A MG 202 1_555 E O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? # _chem_comp.formula 'C14 H16 N2 O S' _chem_comp.formula_weight 260.355 _chem_comp.id 0QV _chem_comp.mon_nstd_flag . _chem_comp.name (4-hydroxypiperidin-1-yl)(1H-indol-3-yl)methanethione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA CAQ 0QV sing 1 n n CAQ CAI 0QV sing 2 n n CAQ CAH 0QV sing 3 n n CAI CAK 0QV sing 4 n n CAH CAJ 0QV sing 5 n n CAK NAR 0QV sing 6 n n CAJ NAR 0QV sing 7 n n NAR CAM 0QV sing 8 n n SAB CAM 0QV doub 9 n n CAM CAN 0QV sing 10 n n CAN CAP 0QV sing 11 n y CAN CAG 0QV doub 12 n y CAF CAP 0QV doub 13 n y CAF CAD 0QV sing 14 n y CAP CAO 0QV sing 15 n y CAG NAL 0QV sing 16 n y CAD CAC 0QV doub 17 n y CAO NAL 0QV sing 18 n y CAO CAE 0QV doub 19 n y CAC CAE 0QV sing 20 n y CAJ H1 0QV sing 21 n n CAJ H2 0QV sing 22 n n CAH H3 0QV sing 23 n n CAH H4 0QV sing 24 n n CAQ H5 0QV sing 25 n n OAA H6 0QV sing 26 n n CAI H7 0QV sing 27 n n CAI H8 0QV sing 28 n n CAK H9 0QV sing 29 n n CAK H10 0QV sing 30 n n CAF H11 0QV sing 31 n n CAD H12 0QV sing 32 n n CAC H13 0QV sing 33 n n CAE H14 0QV sing 34 n n NAL H15 0QV sing 35 n n CAG H16 0QV sing 36 n n # _atom_sites.entry_id 4EPW _atom_sites.fract_transf_matrix[1][1] 0.025498 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 201 201 GDP GDP . C 3 MG A 1 202 301 MG MG . D 4 0QV A 1 203 401 0QV JPB . E 5 HOH A 1 301 1 HOH HOH . E 5 HOH A 2 302 2 HOH HOH . E 5 HOH A 3 303 3 HOH HOH . E 5 HOH A 4 304 4 HOH HOH . E 5 HOH A 5 305 5 HOH HOH . E 5 HOH A 6 306 6 HOH HOH . E 5 HOH A 7 307 7 HOH HOH . E 5 HOH A 8 308 8 HOH HOH . E 5 HOH A 9 309 9 HOH HOH . E 5 HOH A 10 310 10 HOH HOH . E 5 HOH A 11 311 11 HOH HOH . E 5 HOH A 12 312 12 HOH HOH . E 5 HOH A 13 313 13 HOH HOH . E 5 HOH A 14 314 14 HOH HOH . E 5 HOH A 15 315 15 HOH HOH . E 5 HOH A 16 316 16 HOH HOH . E 5 HOH A 17 317 17 HOH HOH . E 5 HOH A 18 318 18 HOH HOH . E 5 HOH A 19 319 19 HOH HOH . E 5 HOH A 20 320 20 HOH HOH . E 5 HOH A 21 321 21 HOH HOH . E 5 HOH A 22 322 22 HOH HOH . E 5 HOH A 23 323 23 HOH HOH . E 5 HOH A 24 324 24 HOH HOH . E 5 HOH A 25 325 25 HOH HOH . E 5 HOH A 26 326 26 HOH HOH . E 5 HOH A 27 327 27 HOH HOH . E 5 HOH A 28 328 28 HOH HOH . E 5 HOH A 29 329 29 HOH HOH . E 5 HOH A 30 330 30 HOH HOH . E 5 HOH A 31 331 31 HOH HOH . E 5 HOH A 32 332 32 HOH HOH . E 5 HOH A 33 333 33 HOH HOH . E 5 HOH A 34 334 34 HOH HOH . E 5 HOH A 35 335 35 HOH HOH . E 5 HOH A 36 336 36 HOH HOH . E 5 HOH A 37 337 37 HOH HOH . E 5 HOH A 38 338 38 HOH HOH . E 5 HOH A 39 339 39 HOH HOH . E 5 HOH A 40 340 40 HOH HOH . E 5 HOH A 41 341 41 HOH HOH . E 5 HOH A 42 342 42 HOH HOH . E 5 HOH A 43 343 43 HOH HOH . E 5 HOH A 44 344 44 HOH HOH . E 5 HOH A 45 345 45 HOH HOH . E 5 HOH A 46 346 46 HOH HOH . E 5 HOH A 47 347 47 HOH HOH . E 5 HOH A 48 348 48 HOH HOH . E 5 HOH A 49 349 49 HOH HOH . E 5 HOH A 50 350 50 HOH HOH . E 5 HOH A 51 351 51 HOH HOH . E 5 HOH A 52 352 52 HOH HOH . E 5 HOH A 53 353 53 HOH HOH . E 5 HOH A 54 354 54 HOH HOH . E 5 HOH A 55 355 55 HOH HOH . E 5 HOH A 56 356 56 HOH HOH . E 5 HOH A 57 357 57 HOH HOH . E 5 HOH A 58 358 58 HOH HOH . E 5 HOH A 59 359 59 HOH HOH . E 5 HOH A 60 360 60 HOH HOH . E 5 HOH A 61 361 61 HOH HOH . E 5 HOH A 62 362 62 HOH HOH . E 5 HOH A 63 363 63 HOH HOH . E 5 HOH A 64 364 64 HOH HOH . E 5 HOH A 65 365 65 HOH HOH . E 5 HOH A 66 366 66 HOH HOH . E 5 HOH A 67 367 67 HOH HOH . E 5 HOH A 68 368 68 HOH HOH . E 5 HOH A 69 369 69 HOH HOH . E 5 HOH A 70 370 70 HOH HOH . E 5 HOH A 71 371 71 HOH HOH . E 5 HOH A 72 372 72 HOH HOH . E 5 HOH A 73 373 73 HOH HOH . E 5 HOH A 74 374 74 HOH HOH . E 5 HOH A 75 375 75 HOH HOH . E 5 HOH A 76 376 76 HOH HOH . E 5 HOH A 77 377 77 HOH HOH . E 5 HOH A 78 378 78 HOH HOH . E 5 HOH A 79 379 79 HOH HOH . E 5 HOH A 80 380 80 HOH HOH . E 5 HOH A 81 381 81 HOH HOH . E 5 HOH A 82 382 82 HOH HOH . E 5 HOH A 83 383 83 HOH HOH . E 5 HOH A 84 384 84 HOH HOH . E 5 HOH A 85 385 85 HOH HOH . E 5 HOH A 86 386 86 HOH HOH . E 5 HOH A 87 387 87 HOH HOH . E 5 HOH A 88 388 88 HOH HOH . E 5 HOH A 89 389 89 HOH HOH . E 5 HOH A 90 390 90 HOH HOH . E 5 HOH A 91 391 91 HOH HOH . E 5 HOH A 92 392 92 HOH HOH . E 5 HOH A 93 393 93 HOH HOH . E 5 HOH A 94 394 94 HOH HOH . E 5 HOH A 95 395 95 HOH HOH . E 5 HOH A 96 396 96 HOH HOH . E 5 HOH A 97 397 97 HOH HOH . E 5 HOH A 98 398 98 HOH HOH . E 5 HOH A 99 399 99 HOH HOH . E 5 HOH A 100 400 100 HOH HOH . E 5 HOH A 101 401 101 HOH HOH . E 5 HOH A 102 402 102 HOH HOH . E 5 HOH A 103 403 103 HOH HOH . E 5 HOH A 104 404 104 HOH HOH . E 5 HOH A 105 405 105 HOH HOH . E 5 HOH A 106 406 106 HOH HOH . E 5 HOH A 107 407 107 HOH HOH . E 5 HOH A 108 408 108 HOH HOH . E 5 HOH A 109 409 109 HOH HOH . E 5 HOH A 110 410 110 HOH HOH . E 5 HOH A 111 411 111 HOH HOH . E 5 HOH A 112 412 112 HOH HOH . E 5 HOH A 113 413 113 HOH HOH . E 5 HOH A 114 414 114 HOH HOH . E 5 HOH A 115 415 115 HOH HOH . E 5 HOH A 116 416 116 HOH HOH . E 5 HOH A 117 417 117 HOH HOH . E 5 HOH A 118 418 118 HOH HOH . E 5 HOH A 119 419 119 HOH HOH . E 5 HOH A 120 420 120 HOH HOH . E 5 HOH A 121 421 121 HOH HOH . E 5 HOH A 122 422 122 HOH HOH . E 5 HOH A 123 423 123 HOH HOH . E 5 HOH A 124 424 124 HOH HOH . E 5 HOH A 125 425 125 HOH HOH . E 5 HOH A 126 426 126 HOH HOH . E 5 HOH A 127 427 127 HOH HOH . E 5 HOH A 128 428 128 HOH HOH . E 5 HOH A 129 429 129 HOH HOH . E 5 HOH A 130 430 130 HOH HOH . E 5 HOH A 131 431 131 HOH HOH . E 5 HOH A 132 432 132 HOH HOH . E 5 HOH A 133 433 133 HOH HOH . E 5 HOH A 134 434 134 HOH HOH . E 5 HOH A 135 435 135 HOH HOH . E 5 HOH A 136 436 136 HOH HOH . E 5 HOH A 137 437 137 HOH HOH . E 5 HOH A 138 438 138 HOH HOH . E 5 HOH A 139 439 139 HOH HOH . E 5 HOH A 140 440 140 HOH HOH . E 5 HOH A 141 441 141 HOH HOH . E 5 HOH A 142 442 142 HOH HOH . E 5 HOH A 143 443 143 HOH HOH . E 5 HOH A 144 444 144 HOH HOH . E 5 HOH A 145 445 145 HOH HOH . E 5 HOH A 146 446 146 HOH HOH . E 5 HOH A 147 447 147 HOH HOH . E 5 HOH A 148 448 148 HOH HOH . E 5 HOH A 149 449 149 HOH HOH . E 5 HOH A 150 450 150 HOH HOH . E 5 HOH A 151 451 151 HOH HOH . E 5 HOH A 152 452 152 HOH HOH . E 5 HOH A 153 453 153 HOH HOH . E 5 HOH A 154 454 154 HOH HOH . E 5 HOH A 155 455 155 HOH HOH . E 5 HOH A 156 456 156 HOH HOH . E 5 HOH A 157 457 157 HOH HOH . E 5 HOH A 158 458 158 HOH HOH . E 5 HOH A 159 459 159 HOH HOH . E 5 HOH A 160 460 160 HOH HOH . E 5 HOH A 161 461 161 HOH HOH . E 5 HOH A 162 462 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAJ 0QV . . . D 4 -25.478 -2.613 -12.619 1 14.42 ? CAJ 0QV 203 A 1 HETATM 2 C CAH 0QV . . . D 4 -24.729 -2.453 -13.99 1 15.48 ? CAH 0QV 203 A 1 HETATM 3 C CAQ 0QV . . . D 4 -25.702 -2.089 -15.122 1 17.41 ? CAQ 0QV 203 A 1 HETATM 4 O OAA 0QV . . . D 4 -26.611 -3.211 -15.252 1 17.15 ? OAA 0QV 203 A 1 HETATM 5 C CAI 0QV . . . D 4 -26.548 -0.778 -14.887 1 14.63 ? CAI 0QV 203 A 1 HETATM 6 C CAK 0QV . . . D 4 -27.1 -0.861 -13.485 1 15.53 ? CAK 0QV 203 A 1 HETATM 7 N NAR 0QV . . . D 4 -26.065 -1.238 -12.465 1 15.72 ? NAR 0QV 203 A 1 HETATM 8 C CAM 0QV . . . D 4 -25.744 -0.404 -11.401 1 13.28 ? CAM 0QV 203 A 1 HETATM 9 S SAB 0QV . . . D 4 -26.455 1.211 -11.473 1 16.91 ? SAB 0QV 203 A 1 HETATM 10 C CAN 0QV . . . D 4 -24.886 -0.744 -10.303 1 15.65 ? CAN 0QV 203 A 1 HETATM 11 C CAP 0QV . . . D 4 -23.88 0.104 -9.734 1 12.53 ? CAP 0QV 203 A 1 HETATM 12 C CAF 0QV . . . D 4 -23.423 1.405 -9.995 1 17.21 ? CAF 0QV 203 A 1 HETATM 13 C CAD 0QV . . . D 4 -22.396 1.961 -9.268 1 14.7 ? CAD 0QV 203 A 1 HETATM 14 C CAC 0QV . . . D 4 -21.824 1.25 -8.225 1 13.67 ? CAC 0QV 203 A 1 HETATM 15 C CAE 0QV . . . D 4 -22.302 -0.026 -7.894 1 14.97 ? CAE 0QV 203 A 1 HETATM 16 C CAO 0QV . . . D 4 -23.328 -0.612 -8.645 1 14.81 ? CAO 0QV 203 A 1 HETATM 17 N NAL 0QV . . . D 4 -24.011 -1.79 -8.568 1 15.87 ? NAL 0QV 203 A 1 HETATM 18 C CAG 0QV . . . D 4 -24.899 -1.868 -9.577 1 14.01 ? CAG 0QV 203 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 80 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 18 #