data_4EQM # _model_server_result.job_id objS47ZxqMoYsXXZ1jQ_Iw _model_server_result.datetime_utc '2024-12-11 16:56:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eqm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":300}' # _entry.id 4EQM # _exptl.entry_id 4EQM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.96 _cell.angle_gamma 90 _cell.entry_id 4EQM _cell.length_a 221.51 _cell.length_b 127.55 _cell.length_c 70.28 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EQM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,H 1 1 B,I,J 2 1 C,K,L 3 1 D,M 4 1 E,N 5 1 F,O 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 N N N ? 2 O N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4EQM _atom_sites.fract_transf_matrix[1][1] 0.004514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000003 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014229 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ANP A 1 300 300 ANP ANP . H 3 BEN A 1 301 301 BEN BEN . I 2 ANP B 1 300 300 ANP ANP . J 3 BEN B 1 301 301 BEN BEN . K 2 ANP C 1 300 300 ANP ANP . L 3 BEN C 1 301 301 BEN BEN . M 2 ANP D 1 300 300 ANP ANP . N 2 ANP E 1 300 300 ANP ANP . O 2 ANP F 1 300 300 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ANP . . . G 2 -18.254 12.335 25.437 1 170.24 ? PB ANP 300 A 1 HETATM 2 O O1B ANP . . . G 2 -19.591 12.736 24.94 1 137.88 ? O1B ANP 300 A 1 HETATM 3 O O2B ANP . . . G 2 -17.236 12.582 24.378 1 140.5 ? O2B ANP 300 A 1 HETATM 4 N N3B ANP . . . G 2 -17.873 13.193 26.822 1 167.23 ? N3B ANP 300 A 1 HETATM 5 P PA ANP . . . G 2 -17.984 9.673 24.814 1 127.81 ? PA ANP 300 A 1 HETATM 6 O O1A ANP . . . G 2 -16.522 9.589 24.514 1 123.87 ? O1A ANP 300 A 1 HETATM 7 O O2A ANP . . . G 2 -18.754 9.922 23.549 1 98.15 ? O2A ANP 300 A 1 HETATM 8 O O3A ANP . . . G 2 -18.261 10.812 25.872 1 143.82 ? O3A ANP 300 A 1 HETATM 9 O O5' ANP . . . G 2 -18.477 8.333 25.487 1 108.17 ? O5' ANP 300 A 1 HETATM 10 C C5' ANP . . . G 2 -18.106 8.033 26.8 1 117.69 ? C5' ANP 300 A 1 HETATM 11 C C4' ANP . . . G 2 -18.775 6.732 27.201 1 97.09 ? C4' ANP 300 A 1 HETATM 12 O O4' ANP . . . G 2 -19.703 6.364 26.215 1 87.56 ? O4' ANP 300 A 1 HETATM 13 C C3' ANP . . . G 2 -17.749 5.656 27.402 1 106.64 ? C3' ANP 300 A 1 HETATM 14 O O3' ANP . . . G 2 -17.878 5.031 28.63 1 78.04 ? O3' ANP 300 A 1 HETATM 15 C C2' ANP . . . G 2 -18.015 4.739 26.26 1 110.4 ? C2' ANP 300 A 1 HETATM 16 O O2' ANP . . . G 2 -17.812 3.403 26.559 1 123.7 ? O2' ANP 300 A 1 HETATM 17 C C1' ANP . . . G 2 -19.421 5.021 25.931 1 88.63 ? C1' ANP 300 A 1 HETATM 18 N N9 ANP . . . G 2 -19.76 4.729 24.56 1 82.09 ? N9 ANP 300 A 1 HETATM 19 C C8 ANP . . . G 2 -19.706 5.6 23.507 1 91.72 ? C8 ANP 300 A 1 HETATM 20 N N7 ANP . . . G 2 -20.119 4.949 22.393 1 65.97 ? N7 ANP 300 A 1 HETATM 21 C C5 ANP . . . G 2 -20.431 3.695 22.748 1 72.06 ? C5 ANP 300 A 1 HETATM 22 C C6 ANP . . . G 2 -20.898 2.614 22.025 1 66.73 ? C6 ANP 300 A 1 HETATM 23 N N6 ANP . . . G 2 -21.136 2.741 20.603 1 63.17 ? N6 ANP 300 A 1 HETATM 24 N N1 ANP . . . G 2 -21.13 1.443 22.648 1 68.68 ? N1 ANP 300 A 1 HETATM 25 C C2 ANP . . . G 2 -20.906 1.327 23.995 1 68.18 ? C2 ANP 300 A 1 HETATM 26 N N3 ANP . . . G 2 -20.444 2.398 24.711 1 60.29 ? N3 ANP 300 A 1 HETATM 27 C C4 ANP . . . G 2 -20.207 3.565 24.1 1 73.06 ? C4 ANP 300 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #