data_4EQM # _model_server_result.job_id rY6tl1GP9sFsaMXZ9GklrQ _model_server_result.datetime_utc '2024-12-01 21:31:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eqm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":300}' # _entry.id 4EQM # _exptl.entry_id 4EQM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.96 _cell.angle_gamma 90 _cell.entry_id 4EQM _cell.length_a 221.51 _cell.length_b 127.55 _cell.length_c 70.28 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EQM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,H 1 1 B,I,J 2 1 C,K,L 3 1 D,M 4 1 E,N 5 1 F,O 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 N N N ? 2 O N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4EQM _atom_sites.fract_transf_matrix[1][1] 0.004514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000003 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014229 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ANP A 1 300 300 ANP ANP . H 3 BEN A 1 301 301 BEN BEN . I 2 ANP B 1 300 300 ANP ANP . J 3 BEN B 1 301 301 BEN BEN . K 2 ANP C 1 300 300 ANP ANP . L 3 BEN C 1 301 301 BEN BEN . M 2 ANP D 1 300 300 ANP ANP . N 2 ANP E 1 300 300 ANP ANP . O 2 ANP F 1 300 300 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ANP . . . O 2 -52.235 38.791 70.383 1 177.08 ? PB ANP 300 F 1 HETATM 2 O O1B ANP . . . O 2 -51.335 38.459 69.251 1 121.14 ? O1B ANP 300 F 1 HETATM 3 O O2B ANP . . . O 2 -52.882 40.115 70.159 1 156.3 ? O2B ANP 300 F 1 HETATM 4 N N3B ANP . . . O 2 -53.403 37.603 70.55 1 138.49 ? N3B ANP 300 F 1 HETATM 5 P PA ANP . . . O 2 -50.872 40.141 72.356 1 153.99 ? PA ANP 300 F 1 HETATM 6 O O1A ANP . . . O 2 -49.895 39.823 73.441 1 121.15 ? O1A ANP 300 F 1 HETATM 7 O O2A ANP . . . O 2 -52.011 40.952 72.913 1 110.74 ? O2A ANP 300 F 1 HETATM 8 O O3A ANP . . . O 2 -51.424 38.794 71.743 1 157.85 ? O3A ANP 300 F 1 HETATM 9 O O5' ANP . . . O 2 -50.147 40.935 71.193 1 121.23 ? O5' ANP 300 F 1 HETATM 10 C C5' ANP . . . O 2 -49.012 40.392 70.584 1 113.3 ? C5' ANP 300 F 1 HETATM 11 C C4' ANP . . . O 2 -48.285 41.449 69.767 1 101.66 ? C4' ANP 300 F 1 HETATM 12 O O4' ANP . . . O 2 -47.245 42.012 70.519 1 97.01 ? O4' ANP 300 F 1 HETATM 13 C C3' ANP . . . O 2 -47.752 40.834 68.512 1 112.65 ? C3' ANP 300 F 1 HETATM 14 O O3' ANP . . . O 2 -47.918 41.661 67.421 1 137.46 ? O3' ANP 300 F 1 HETATM 15 C C2' ANP . . . O 2 -46.318 40.629 68.833 1 112.2 ? C2' ANP 300 F 1 HETATM 16 O O2' ANP . . . O 2 -45.472 40.802 67.75 1 93.43 ? O2' ANP 300 F 1 HETATM 17 C C1' ANP . . . O 2 -46.05 41.596 69.911 1 108.25 ? C1' ANP 300 F 1 HETATM 18 N N9 ANP . . . O 2 -45.187 40.999 70.901 1 105.5 ? N9 ANP 300 F 1 HETATM 19 C C8 ANP . . . O 2 -45.584 40.3 72.004 1 92.22 ? C8 ANP 300 F 1 HETATM 20 N N7 ANP . . . O 2 -44.476 39.9 72.672 1 87.72 ? N7 ANP 300 F 1 HETATM 21 C C5 ANP . . . O 2 -43.406 40.341 71.999 1 83.3 ? C5 ANP 300 F 1 HETATM 22 C C6 ANP . . . O 2 -42.048 40.224 72.227 1 79.42 ? C6 ANP 300 F 1 HETATM 23 N N6 ANP . . . O 2 -41.556 39.508 73.383 1 72.56 ? N6 ANP 300 F 1 HETATM 24 N N1 ANP . . . O 2 -41.177 40.779 71.365 1 79.2 ? N1 ANP 300 F 1 HETATM 25 C C2 ANP . . . O 2 -41.641 41.453 70.267 1 76.03 ? C2 ANP 300 F 1 HETATM 26 N N3 ANP . . . O 2 -42.984 41.572 70.042 1 83.81 ? N3 ANP 300 F 1 HETATM 27 C C4 ANP . . . O 2 -43.858 41.023 70.894 1 89.55 ? C4 ANP 300 F 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #