data_4EQM # _model_server_result.job_id NingC8diYevqqXd_k5WeZA _model_server_result.datetime_utc '2024-12-11 06:09:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eqm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":301}' # _entry.id 4EQM # _exptl.entry_id 4EQM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.96 _cell.angle_gamma 90 _cell.entry_id 4EQM _cell.length_a 221.51 _cell.length_b 127.55 _cell.length_c 70.28 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EQM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,H 1 1 B,I,J 2 1 C,K,L 3 1 D,M 4 1 E,N 5 1 F,O 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 120 n y C1 C6 BEN sing 121 n y C1 C BEN sing 122 n n C2 C3 BEN sing 123 n y C2 H2 BEN sing 124 n n C3 C4 BEN doub 125 n y C3 H3 BEN sing 126 n n C4 C5 BEN sing 127 n y C4 H4 BEN sing 128 n n C5 C6 BEN doub 129 n y C5 H5 BEN sing 130 n n C6 H6 BEN sing 131 n n C N1 BEN doub 132 e n C N2 BEN sing 133 n n N1 HN1 BEN sing 134 n n N2 HN21 BEN sing 135 n n N2 HN22 BEN sing 136 n n # _atom_sites.entry_id 4EQM _atom_sites.fract_transf_matrix[1][1] 0.004514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000003 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014229 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ANP A 1 300 300 ANP ANP . H 3 BEN A 1 301 301 BEN BEN . I 2 ANP B 1 300 300 ANP ANP . J 3 BEN B 1 301 301 BEN BEN . K 2 ANP C 1 300 300 ANP ANP . L 3 BEN C 1 301 301 BEN BEN . M 2 ANP D 1 300 300 ANP ANP . N 2 ANP E 1 300 300 ANP ANP . O 2 ANP F 1 300 300 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . L 3 -83.858 57.886 55.719 1 83.83 ? C1 BEN 301 C 1 HETATM 2 C C2 BEN . . . L 3 -83.366 58.971 56.433 1 95.84 ? C2 BEN 301 C 1 HETATM 3 C C3 BEN . . . L 3 -84.227 59.985 56.838 1 85.58 ? C3 BEN 301 C 1 HETATM 4 C C4 BEN . . . L 3 -85.579 59.908 56.531 1 98.32 ? C4 BEN 301 C 1 HETATM 5 C C5 BEN . . . L 3 -86.072 58.822 55.818 1 105.37 ? C5 BEN 301 C 1 HETATM 6 C C6 BEN . . . L 3 -85.21 57.813 55.411 1 95.96 ? C6 BEN 301 C 1 HETATM 7 C C BEN . . . L 3 -82.995 56.866 55.309 1 78.25 ? C BEN 301 C 1 HETATM 8 N N1 BEN . . . L 3 -81.738 56.835 55.707 1 76.66 ? N1 BEN 301 C 1 HETATM 9 N N2 BEN . . . L 3 -83.423 55.896 54.524 1 78.43 ? N2 BEN 301 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 9 #