data_4EQZ # _model_server_result.job_id 0vU1LhgLVZyBHMcXTTfYnQ _model_server_result.datetime_utc '2025-02-17 15:56:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4eqz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4EQZ # _exptl.entry_id 4EQZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 498.578 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-deoxy-5'-[(3-{[(4-methylphenyl)carbamoyl]amino}propyl)(propan-2-yl)amino]adenosine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4EQZ _cell.length_a 150.009 _cell.length_b 150.009 _cell.length_c 53.244 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EQZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H34 N8 O4' _chem_comp.formula_weight 498.578 _chem_comp.id AW0 _chem_comp.mon_nstd_flag . _chem_comp.name "5'-deoxy-5'-[(3-{[(4-methylphenyl)carbamoyl]amino}propyl)(propan-2-yl)amino]adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 N1 AW0 doub 70 n y N1 C2 AW0 sing 71 n y C2 N3 AW0 doub 72 n y C2 H2 AW0 sing 73 n n C4 N3 AW0 sing 74 n y C5 C4 AW0 doub 75 n y C4 N9 AW0 sing 76 n y C6 C5 AW0 sing 77 n y N7 C5 AW0 sing 78 n y N6 C6 AW0 sing 79 n n N6 HN6 AW0 sing 80 n n N6 HN6A AW0 sing 81 n n N7 C8 AW0 doub 82 n y C8 N9 AW0 sing 83 n y C8 H8 AW0 sing 84 n n N9 CBH AW0 sing 85 n n CAY CAA AW0 sing 86 n n CAA HAA AW0 sing 87 n n CAA HAAA AW0 sing 88 n n CAA HAAB AW0 sing 89 n n CAB CBD AW0 sing 90 n n CAB HAB AW0 sing 91 n n CAB HABA AW0 sing 92 n n CAB HABB AW0 sing 93 n n CAC CBD AW0 sing 94 n n CAC HAC AW0 sing 95 n n CAC HACA AW0 sing 96 n n CAC HACB AW0 sing 97 n n OAE CAX AW0 doub 98 n n OAF CBE AW0 sing 99 n n OAF HOAF AW0 sing 100 n n OAG CBF AW0 sing 101 n n OAG HOAG AW0 sing 102 n n CAK CAI AW0 doub 103 n y CAI CAY AW0 sing 104 n y CAI HAI AW0 sing 105 n n CAL CAJ AW0 sing 106 n y CAJ CAY AW0 doub 107 n y CAJ HAJ AW0 sing 108 n n CBA CAK AW0 sing 109 n y CAK HAK AW0 sing 110 n n CBA CAL AW0 doub 111 n y CAL HAL AW0 sing 112 n n CAN CAP AW0 sing 113 n n CAN CAO AW0 sing 114 n n CAN HAN AW0 sing 115 n n CAN HANA AW0 sing 116 n n CAO NAU AW0 sing 117 n n CAO HAO AW0 sing 118 n n CAO HAOA AW0 sing 119 n n NBI CAP AW0 sing 120 n n CAP HAP AW0 sing 121 n n CAP HAPA AW0 sing 122 n n CBG CAQ AW0 sing 123 n n CAQ NBI AW0 sing 124 n n CAQ HAQ AW0 sing 125 n n CAQ HAQA AW0 sing 126 n n NAU CAX AW0 sing 127 n n NAU HNAU AW0 sing 128 n n CAX NAV AW0 sing 129 n n NAV CBA AW0 sing 130 n n NAV HNAV AW0 sing 131 n n CBH OAW AW0 sing 132 n n OAW CBG AW0 sing 133 n n NBI CBD AW0 sing 134 n n CBD HBD AW0 sing 135 n n CBF CBE AW0 sing 136 n n CBE CBG AW0 sing 137 n n CBE HBE AW0 sing 138 n n CBF CBH AW0 sing 139 n n CBF HBF AW0 sing 140 n n CBG HBG AW0 sing 141 n n CBH HBH AW0 sing 142 n n # _atom_sites.entry_id 4EQZ _atom_sites.fract_transf_matrix[1][1] 0.006666 _atom_sites.fract_transf_matrix[1][2] 0.003849 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007698 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018781 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AW0 A 1 501 1 AW0 DRG . C 3 UNX A 1 502 1 UNX UNL . D 3 UNX A 1 503 2 UNX UNL . E 3 UNX A 1 504 3 UNX UNL . F 3 UNX A 1 505 4 UNX UNL . G 3 UNX A 1 506 5 UNX UNL . H 3 UNX A 1 507 6 UNX UNL . I 4 HOH A 1 601 1 HOH HOH . I 4 HOH A 2 602 2 HOH HOH . I 4 HOH A 3 603 3 HOH HOH . I 4 HOH A 4 604 4 HOH HOH . I 4 HOH A 5 605 6 HOH HOH . I 4 HOH A 6 606 7 HOH HOH . I 4 HOH A 7 607 8 HOH HOH . I 4 HOH A 8 608 9 HOH HOH . I 4 HOH A 9 609 10 HOH HOH . I 4 HOH A 10 610 11 HOH HOH . I 4 HOH A 11 611 12 HOH HOH . I 4 HOH A 12 612 14 HOH HOH . I 4 HOH A 13 613 16 HOH HOH . I 4 HOH A 14 614 17 HOH HOH . I 4 HOH A 15 615 18 HOH HOH . I 4 HOH A 16 616 19 HOH HOH . I 4 HOH A 17 617 20 HOH HOH . I 4 HOH A 18 618 21 HOH HOH . I 4 HOH A 19 619 22 HOH HOH . I 4 HOH A 20 620 23 HOH HOH . I 4 HOH A 21 621 24 HOH HOH . I 4 HOH A 22 622 25 HOH HOH . I 4 HOH A 23 623 26 HOH HOH . I 4 HOH A 24 624 27 HOH HOH . I 4 HOH A 25 625 28 HOH HOH . I 4 HOH A 26 626 30 HOH HOH . I 4 HOH A 27 627 32 HOH HOH . I 4 HOH A 28 628 33 HOH HOH . I 4 HOH A 29 629 34 HOH HOH . I 4 HOH A 30 630 36 HOH HOH . I 4 HOH A 31 631 37 HOH HOH . I 4 HOH A 32 632 38 HOH HOH . I 4 HOH A 33 633 39 HOH HOH . I 4 HOH A 34 634 40 HOH HOH . I 4 HOH A 35 635 41 HOH HOH . I 4 HOH A 36 636 43 HOH HOH . I 4 HOH A 37 637 45 HOH HOH . I 4 HOH A 38 638 46 HOH HOH . I 4 HOH A 39 639 47 HOH HOH . I 4 HOH A 40 640 48 HOH HOH . I 4 HOH A 41 641 49 HOH HOH . I 4 HOH A 42 642 51 HOH HOH . I 4 HOH A 43 643 52 HOH HOH . I 4 HOH A 44 644 54 HOH HOH . I 4 HOH A 45 645 55 HOH HOH . I 4 HOH A 46 646 56 HOH HOH . I 4 HOH A 47 647 58 HOH HOH . I 4 HOH A 48 648 59 HOH HOH . I 4 HOH A 49 649 60 HOH HOH . I 4 HOH A 50 650 62 HOH HOH . I 4 HOH A 51 651 63 HOH HOH . I 4 HOH A 52 652 64 HOH HOH . I 4 HOH A 53 653 67 HOH HOH . I 4 HOH A 54 654 68 HOH HOH . I 4 HOH A 55 655 69 HOH HOH . I 4 HOH A 56 656 71 HOH HOH . I 4 HOH A 57 657 72 HOH HOH . I 4 HOH A 58 658 76 HOH HOH . I 4 HOH A 59 659 77 HOH HOH . I 4 HOH A 60 660 78 HOH HOH . I 4 HOH A 61 661 81 HOH HOH . I 4 HOH A 62 662 82 HOH HOH . I 4 HOH A 63 663 84 HOH HOH . I 4 HOH A 64 664 85 HOH HOH . I 4 HOH A 65 665 87 HOH HOH . I 4 HOH A 66 666 88 HOH HOH . I 4 HOH A 67 667 90 HOH HOH . I 4 HOH A 68 668 91 HOH HOH . I 4 HOH A 69 669 93 HOH HOH . I 4 HOH A 70 670 94 HOH HOH . I 4 HOH A 71 671 97 HOH HOH . I 4 HOH A 72 672 99 HOH HOH . I 4 HOH A 73 673 102 HOH HOH . I 4 HOH A 74 674 106 HOH HOH . I 4 HOH A 75 675 109 HOH HOH . I 4 HOH A 76 676 111 HOH HOH . I 4 HOH A 77 677 113 HOH HOH . I 4 HOH A 78 678 115 HOH HOH . I 4 HOH A 79 679 121 HOH HOH . I 4 HOH A 80 680 124 HOH HOH . I 4 HOH A 81 681 128 HOH HOH . I 4 HOH A 82 682 140 HOH HOH . I 4 HOH A 83 683 146 HOH HOH . I 4 HOH A 84 684 147 HOH HOH . I 4 HOH A 85 685 148 HOH HOH . I 4 HOH A 86 686 149 HOH HOH . I 4 HOH A 87 687 150 HOH HOH . I 4 HOH A 88 688 151 HOH HOH . I 4 HOH A 89 689 153 HOH HOH . I 4 HOH A 90 690 154 HOH HOH . I 4 HOH A 91 691 155 HOH HOH . I 4 HOH A 92 692 156 HOH HOH . I 4 HOH A 93 693 157 HOH HOH . I 4 HOH A 94 694 158 HOH HOH . I 4 HOH A 95 695 159 HOH HOH . I 4 HOH A 96 696 160 HOH HOH . I 4 HOH A 97 697 161 HOH HOH . I 4 HOH A 98 698 162 HOH HOH . I 4 HOH A 99 699 163 HOH HOH . I 4 HOH A 100 700 164 HOH HOH . I 4 HOH A 101 701 165 HOH HOH . I 4 HOH A 102 702 166 HOH HOH . I 4 HOH A 103 703 167 HOH HOH . I 4 HOH A 104 704 168 HOH HOH . I 4 HOH A 105 705 169 HOH HOH . I 4 HOH A 106 706 170 HOH HOH . I 4 HOH A 107 707 171 HOH HOH . I 4 HOH A 108 708 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 AW0 . . . B 2 15.166 59.709 -9.939 1 27.76 ? N1 AW0 501 A 1 HETATM 2 C C2 AW0 . . . B 2 16.383 59.077 -9.668 1 28.13 ? C2 AW0 501 A 1 HETATM 3 N N3 AW0 . . . B 2 17.53 59.86 -9.589 1 27.89 ? N3 AW0 501 A 1 HETATM 4 C C4 AW0 . . . B 2 17.453 61.188 -9.72 1 27.48 ? C4 AW0 501 A 1 HETATM 5 C C5 AW0 . . . B 2 16.27 61.773 -9.975 1 27.58 ? C5 AW0 501 A 1 HETATM 6 C C6 AW0 . . . B 2 15.162 61.031 -10.094 1 27.69 ? C6 AW0 501 A 1 HETATM 7 N N6 AW0 . . . B 2 14.03 61.665 -10.349 1 28.45 ? N6 AW0 501 A 1 HETATM 8 N N7 AW0 . . . B 2 16.482 63.087 -10.058 1 25.15 ? N7 AW0 501 A 1 HETATM 9 C C8 AW0 . . . B 2 17.787 63.313 -9.891 1 26.97 ? C8 AW0 501 A 1 HETATM 10 N N9 AW0 . . . B 2 18.395 62.131 -9.653 1 27.96 ? N9 AW0 501 A 1 HETATM 11 C CAA AW0 . . . B 2 20.507 65.733 3.457 1 26.22 ? CAA AW0 501 A 1 HETATM 12 C CAB AW0 . . . B 2 21.437 65.866 -5.476 1 22.85 ? CAB AW0 501 A 1 HETATM 13 C CAC AW0 . . . B 2 19.457 64.46 -5.979 1 21.8 ? CAC AW0 501 A 1 HETATM 14 O OAE AW0 . . . B 2 23.762 63.471 -1.62 1 26.67 ? OAE AW0 501 A 1 HETATM 15 O OAF AW0 . . . B 2 22.922 61.4 -9.96 1 32.62 ? OAF AW0 501 A 1 HETATM 16 O OAG AW0 . . . B 2 20.885 61.86 -11.52 1 30.5 ? OAG AW0 501 A 1 HETATM 17 C CAI AW0 . . . B 2 20.072 63.904 1.852 1 22.96 ? CAI AW0 501 A 1 HETATM 18 C CAJ AW0 . . . B 2 22.281 64.791 2.058 1 24.04 ? CAJ AW0 501 A 1 HETATM 19 C CAK AW0 . . . B 2 20.546 63.05 0.87 1 23.39 ? CAK AW0 501 A 1 HETATM 20 C CAL AW0 . . . B 2 22.752 63.932 1.062 1 23.12 ? CAL AW0 501 A 1 HETATM 21 C CAN AW0 . . . B 2 23.537 61.943 -4.823 1 24.78 ? CAN AW0 501 A 1 HETATM 22 C CAO AW0 . . . B 2 24.312 61.67 -3.543 1 25.98 ? CAO AW0 501 A 1 HETATM 23 C CAP AW0 . . . B 2 22.825 63.3 -4.759 1 24.83 ? CAP AW0 501 A 1 HETATM 24 C CAQ AW0 . . . B 2 21.964 63.621 -7.143 1 27.67 ? CAQ AW0 501 A 1 HETATM 25 N NAU AW0 . . . B 2 23.382 61.443 -2.425 1 25.82 ? NAU AW0 501 A 1 HETATM 26 N NAV AW0 . . . B 2 22.242 62.15 -0.505 1 23.91 ? NAV AW0 501 A 1 HETATM 27 O OAW AW0 . . . B 2 20.24 62.296 -8.087 1 29.15 ? OAW AW0 501 A 1 HETATM 28 C CAX AW0 . . . B 2 23.127 62.422 -1.524 1 26.24 ? CAX AW0 501 A 1 HETATM 29 C CAY AW0 . . . B 2 20.946 64.801 2.465 1 27.81 ? CAY AW0 501 A 1 HETATM 30 C CBA AW0 . . . B 2 21.888 63.03 0.456 1 22.85 ? CBA AW0 501 A 1 HETATM 31 C CBD AW0 . . . B 2 20.781 64.472 -5.272 1 25.44 ? CBD AW0 501 A 1 HETATM 32 C CBE AW0 . . . B 2 22.121 62.578 -9.542 1 30.28 ? CBE AW0 501 A 1 HETATM 33 C CBF AW0 . . . B 2 20.803 62.599 -10.302 1 29.25 ? CBF AW0 501 A 1 HETATM 34 C CBG AW0 . . . B 2 21.704 62.402 -8.061 1 28.39 ? CBG AW0 501 A 1 HETATM 35 C CBH AW0 . . . B 2 19.853 61.849 -9.383 1 29.12 ? CBH AW0 501 A 1 HETATM 36 N NBI AW0 . . . B 2 21.657 63.344 -5.714 1 24.65 ? NBI AW0 501 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #