data_4ER6 # _model_server_result.job_id UTZRAA90SdGWhy8CrP6OLQ _model_server_result.datetime_utc '2024-11-13 20:14:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4er6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4ER6 # _exptl.entry_id 4ER6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.566 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-bromo-7-{5-[(3-{[(4-tert-butylphenyl)carbamoyl]amino}propyl)(propan-2-yl)amino]-5-deoxy-beta-D-ribofuranosyl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ER6 _cell.length_a 149.907 _cell.length_b 149.907 _cell.length_c 52.839 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ER6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 53 A LYS 52 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc2 A O LEU 54 A LEU 53 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.977 ? metalc ? metalc3 A O MET 56 A MET 55 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc4 A OD1 ASN 58 A ASN 57 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc5 D NA NA . A NA 503 1_555 E O HOH . A HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc6 D NA NA . A NA 503 1_555 E O HOH . A HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? # _chem_comp.formula 'C28 H40 Br N7 O4' _chem_comp.formula_weight 618.566 _chem_comp.id AW2 _chem_comp.mon_nstd_flag . _chem_comp.name 5-bromo-7-{5-[(3-{[(4-tert-butylphenyl)carbamoyl]amino}propyl)(propan-2-yl)amino]-5-deoxy-beta-D-ribofuranosyl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR9 C08 AW2 sing 70 n n N01 C02 AW2 sing 71 n n N01 HN01 AW2 sing 72 n n N01 HN0A AW2 sing 73 n n C02 C07 AW2 doub 74 n y C02 N03 AW2 sing 75 n y N03 C04 AW2 doub 76 n y C04 N05 AW2 sing 77 n y C04 H04 AW2 sing 78 n n C06 N05 AW2 doub 79 n y C07 C06 AW2 sing 80 n y C06 N11 AW2 sing 81 n y C08 C07 AW2 sing 82 n y C08 C10 AW2 doub 83 n y C10 N11 AW2 sing 84 n y C10 H10 AW2 sing 85 n n N11 C12 AW2 sing 86 n n C39 C12 AW2 sing 87 n n C12 O13 AW2 sing 88 n n C12 H12 AW2 sing 89 n n O13 C14 AW2 sing 90 n n C37 C14 AW2 sing 91 n n C14 C15 AW2 sing 92 n n C14 H14 AW2 sing 93 n n C15 N16 AW2 sing 94 n n C15 H15 AW2 sing 95 n n C15 H15A AW2 sing 96 n n N16 C34 AW2 sing 97 n n N16 C17 AW2 sing 98 n n C18 C17 AW2 sing 99 n n C17 H17 AW2 sing 100 n n C17 H17A AW2 sing 101 n n C18 C19 AW2 sing 102 n n C18 H18 AW2 sing 103 n n C18 H18A AW2 sing 104 n n C19 N20 AW2 sing 105 n n C19 H19 AW2 sing 106 n n C19 H19A AW2 sing 107 n n N20 C21 AW2 sing 108 n n N20 HN20 AW2 sing 109 n n C21 O33 AW2 doub 110 n n C21 N22 AW2 sing 111 n n N22 C23 AW2 sing 112 n n N22 HN22 AW2 sing 113 n n C23 C24 AW2 doub 114 n y C23 C32 AW2 sing 115 n y C24 C25 AW2 sing 116 n y C24 H24 AW2 sing 117 n n C25 C26 AW2 doub 118 n y C25 H25 AW2 sing 119 n n C31 C26 AW2 sing 120 n y C26 C27 AW2 sing 121 n n C28 C27 AW2 sing 122 n n C27 C30 AW2 sing 123 n n C27 C29 AW2 sing 124 n n C28 H28 AW2 sing 125 n n C28 H28A AW2 sing 126 n n C28 H28B AW2 sing 127 n n C29 H29 AW2 sing 128 n n C29 H29A AW2 sing 129 n n C29 H29B AW2 sing 130 n n C30 H30 AW2 sing 131 n n C30 H30A AW2 sing 132 n n C30 H30B AW2 sing 133 n n C32 C31 AW2 doub 134 n y C31 H31 AW2 sing 135 n n C32 H32 AW2 sing 136 n n C36 C34 AW2 sing 137 n n C35 C34 AW2 sing 138 n n C34 H34 AW2 sing 139 n n C35 H35 AW2 sing 140 n n C35 H35A AW2 sing 141 n n C35 H35B AW2 sing 142 n n C36 H36 AW2 sing 143 n n C36 H36A AW2 sing 144 n n C36 H36B AW2 sing 145 n n C39 C37 AW2 sing 146 n n O38 C37 AW2 sing 147 n n C37 H37 AW2 sing 148 n n O38 HO38 AW2 sing 149 n n O40 C39 AW2 sing 150 n n C39 H39 AW2 sing 151 n n O40 HO40 AW2 sing 152 n n # _atom_sites.entry_id 4ER6 _atom_sites.fract_transf_matrix[1][1] 0.006671 _atom_sites.fract_transf_matrix[1][2] 0.003851 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BR A 1 501 1 BR BR . C 3 AW2 A 1 502 1 AW2 LIG . D 4 NA A 1 503 1 NA NA . E 5 HOH A 1 601 1 HOH HOH . E 5 HOH A 2 602 2 HOH HOH . E 5 HOH A 3 603 4 HOH HOH . E 5 HOH A 4 604 5 HOH HOH . E 5 HOH A 5 605 7 HOH HOH . E 5 HOH A 6 606 8 HOH HOH . E 5 HOH A 7 607 9 HOH HOH . E 5 HOH A 8 608 11 HOH HOH . E 5 HOH A 9 609 12 HOH HOH . E 5 HOH A 10 610 15 HOH HOH . E 5 HOH A 11 611 16 HOH HOH . E 5 HOH A 12 612 17 HOH HOH . E 5 HOH A 13 613 18 HOH HOH . E 5 HOH A 14 614 19 HOH HOH . E 5 HOH A 15 615 20 HOH HOH . E 5 HOH A 16 616 21 HOH HOH . E 5 HOH A 17 617 22 HOH HOH . E 5 HOH A 18 618 23 HOH HOH . E 5 HOH A 19 619 24 HOH HOH . E 5 HOH A 20 620 25 HOH HOH . E 5 HOH A 21 621 26 HOH HOH . E 5 HOH A 22 622 27 HOH HOH . E 5 HOH A 23 623 28 HOH HOH . E 5 HOH A 24 624 29 HOH HOH . E 5 HOH A 25 625 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 BR BR9 AW2 . . . C 3 15.09 64.98 -10.617 0.5 74.31 ? BR9 AW2 502 A 1 HETATM 2 N N01 AW2 . . . C 3 13.799 61.848 -10.565 1 59.95 ? N01 AW2 502 A 1 HETATM 3 C C02 AW2 . . . C 3 15.02 61.413 -10.255 1 55.65 ? C02 AW2 502 A 1 HETATM 4 N N03 AW2 . . . C 3 15.197 60.085 -10.072 1 54.27 ? N03 AW2 502 A 1 HETATM 5 C C04 AW2 . . . C 3 16.42 59.643 -9.759 1 53.94 ? C04 AW2 502 A 1 HETATM 6 N N05 AW2 . . . C 3 17.548 60.344 -9.596 1 52.56 ? N05 AW2 502 A 1 HETATM 7 C C06 AW2 . . . C 3 17.359 61.663 -9.781 1 54.98 ? C06 AW2 502 A 1 HETATM 8 C C07 AW2 . . . C 3 16.136 62.272 -10.109 1 56.18 ? C07 AW2 502 A 1 HETATM 9 C C08 AW2 . . . C 3 16.405 63.674 -10.199 1 59.3 ? C08 AW2 502 A 1 HETATM 10 C C10 AW2 . . . C 3 17.725 63.87 -9.94 1 58.15 ? C10 AW2 502 A 1 HETATM 11 N N11 AW2 . . . C 3 18.316 62.646 -9.67 1 58.25 ? N11 AW2 502 A 1 HETATM 12 C C12 AW2 . . . C 3 19.736 62.428 -9.372 1 61.66 ? C12 AW2 502 A 1 HETATM 13 O O13 AW2 . . . C 3 20.068 63.009 -8.142 1 65.1 ? O13 AW2 502 A 1 HETATM 14 C C14 AW2 . . . C 3 21.514 63.009 -8.086 1 64.86 ? C14 AW2 502 A 1 HETATM 15 C C15 AW2 . . . C 3 21.961 64.105 -7.185 1 68.61 ? C15 AW2 502 A 1 HETATM 16 N N16 AW2 . . . C 3 21.915 63.904 -5.733 1 70.11 ? N16 AW2 502 A 1 HETATM 17 C C17 AW2 . . . C 3 23.26 63.782 -5.144 1 65.99 ? C17 AW2 502 A 1 HETATM 18 C C18 AW2 . . . C 3 23.963 62.468 -5.446 1 64.03 ? C18 AW2 502 A 1 HETATM 19 C C19 AW2 . . . C 3 24.637 61.817 -4.258 1 66.68 ? C19 AW2 502 A 1 HETATM 20 N N20 AW2 . . . C 3 23.708 61.606 -3.154 1 70.54 ? N20 AW2 502 A 1 HETATM 21 C C21 AW2 . . . C 3 23.648 62.446 -2.11 1 67.92 ? C21 AW2 502 A 1 HETATM 22 N N22 AW2 . . . C 3 22.716 62.115 -1.172 1 68.43 ? N22 AW2 502 A 1 HETATM 23 C C23 AW2 . . . C 3 22.464 62.834 0.02 1 70.1 ? C23 AW2 502 A 1 HETATM 24 C C24 AW2 . . . C 3 23.385 63.789 0.435 1 70.82 ? C24 AW2 502 A 1 HETATM 25 C C25 AW2 . . . C 3 23.172 64.502 1.593 1 70.39 ? C25 AW2 502 A 1 HETATM 26 C C26 AW2 . . . C 3 22.043 64.289 2.371 1 67.53 ? C26 AW2 502 A 1 HETATM 27 C C27 AW2 . . . C 3 21.818 65.098 3.654 1 70.58 ? C27 AW2 502 A 1 HETATM 28 C C28 AW2 . . . C 3 20.538 65.925 3.521 1 62.2 ? C28 AW2 502 A 1 HETATM 29 C C29 AW2 . . . C 3 21.687 64.179 4.866 1 71.06 ? C29 AW2 502 A 1 HETATM 30 C C30 AW2 . . . C 3 23.017 66.029 3.914 1 65.69 ? C30 AW2 502 A 1 HETATM 31 C C31 AW2 . . . C 3 21.128 63.332 1.945 1 68.24 ? C31 AW2 502 A 1 HETATM 32 C C32 AW2 . . . C 3 21.331 62.613 0.784 1 64.33 ? C32 AW2 502 A 1 HETATM 33 O O33 AW2 . . . C 3 24.373 63.436 -2.011 1 69.38 ? O33 AW2 502 A 1 HETATM 34 C C34 AW2 . . . C 3 21.104 64.984 -5.158 1 66.22 ? C34 AW2 502 A 1 HETATM 35 C C35 AW2 . . . C 3 19.625 64.688 -5.312 1 63.81 ? C35 AW2 502 A 1 HETATM 36 C C36 AW2 . . . C 3 21.491 66.344 -5.723 1 68.22 ? C36 AW2 502 A 1 HETATM 37 C C37 AW2 . . . C 3 22 63.163 -9.53 1 65.24 ? C37 AW2 502 A 1 HETATM 38 O O38 AW2 . . . C 3 22.965 62.153 -9.803 1 70.58 ? O38 AW2 502 A 1 HETATM 39 C C39 AW2 . . . C 3 20.703 63.059 -10.369 1 61.46 ? C39 AW2 502 A 1 HETATM 40 O O40 AW2 . . . C 3 20.842 62.218 -11.5 1 61.25 ? O40 AW2 502 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 40 #