data_4ERF # _model_server_result.job_id 8zZZA3vjhnkB7Juu0IXksQ _model_server_result.datetime_utc '2025-02-05 11:00:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4erf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 4ERF # _exptl.entry_id 4ERF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 478.408 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{(3R,5R,6S)-5-(3-chlorophenyl)-6-(4-chlorophenyl)-1-[(2S,3S)-2-hydroxypentan-3-yl]-3-methyl-2-oxopiperidin-3-yl}acetic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ERF _cell.length_a 56.77 _cell.length_b 97.89 _cell.length_c 105.59 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ERF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C25 H29 Cl2 N O4' _chem_comp.formula_weight 478.408 _chem_comp.id 0R3 _chem_comp.mon_nstd_flag . _chem_comp.name '{(3R,5R,6S)-5-(3-chlorophenyl)-6-(4-chlorophenyl)-1-[(2S,3S)-2-hydroxypentan-3-yl]-3-methyl-2-oxopiperidin-3-yl}acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 0R3 sing 1 n n C20 O4 0R3 sing 2 n n C20 C18 0R3 sing 3 n n C22 C19 0R3 sing 4 n n C11 C12 0R3 doub 5 n y C11 C10 0R3 sing 6 n y C18 C19 0R3 sing 7 n n C18 N1 0R3 sing 8 n n C12 C7 0R3 sing 9 n y CL1 C10 0R3 sing 10 n n C10 C9 0R3 doub 11 n y C7 C1 0R3 sing 12 n n C7 C8 0R3 doub 13 n y N1 C1 0R3 sing 14 n n N1 C5 0R3 sing 15 n n C1 C2 0R3 sing 16 n n C9 C8 0R3 sing 17 n y O1 C5 0R3 doub 18 n n C5 C4 0R3 sing 19 n n C13 C14 0R3 doub 20 n y C13 C6 0R3 sing 21 n y C14 C15 0R3 sing 22 n y C2 C6 0R3 sing 23 n n C2 C3 0R3 sing 24 n n C6 C17 0R3 doub 25 n y C15 C16 0R3 doub 26 n y C3 C4 0R3 sing 27 n n C24 C4 0R3 sing 28 n n C4 C23 0R3 sing 29 n n C17 C16 0R3 sing 30 n y C16 CL2 0R3 sing 31 n n C23 C25 0R3 sing 32 n n C25 O3 0R3 doub 33 n n C25 O2 0R3 sing 34 n n C17 H1 0R3 sing 35 n n C15 H2 0R3 sing 36 n n C14 H3 0R3 sing 37 n n C13 H4 0R3 sing 38 n n C2 H5 0R3 sing 39 n n C3 H6 0R3 sing 40 n n C3 H7 0R3 sing 41 n n C23 H8 0R3 sing 42 n n C23 H9 0R3 sing 43 n n O2 H10 0R3 sing 44 n n C24 H11 0R3 sing 45 n n C24 H12 0R3 sing 46 n n C24 H13 0R3 sing 47 n n C18 H14 0R3 sing 48 n n C19 H15 0R3 sing 49 n n C19 H16 0R3 sing 50 n n C22 H17 0R3 sing 51 n n C22 H18 0R3 sing 52 n n C22 H19 0R3 sing 53 n n C20 H20 0R3 sing 54 n n O4 H21 0R3 sing 55 n n C21 H22 0R3 sing 56 n n C21 H23 0R3 sing 57 n n C21 H24 0R3 sing 58 n n C1 H25 0R3 sing 59 n n C8 H26 0R3 sing 60 n n C9 H27 0R3 sing 61 n n C11 H28 0R3 sing 62 n n C12 H29 0R3 sing 63 n n # _atom_sites.entry_id 4ERF _atom_sites.fract_transf_matrix[1][1] 0.017615 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010216 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009471 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 0R3 A 1 201 1 0R3 INH . E 2 0R3 C 1 201 1 0R3 INH . F 2 0R3 E 1 201 1 0R3 INH . G 3 HOH A 1 301 7 HOH HOH . G 3 HOH A 2 302 8 HOH HOH . G 3 HOH A 3 303 18 HOH HOH . G 3 HOH A 4 304 20 HOH HOH . G 3 HOH A 5 305 23 HOH HOH . G 3 HOH A 6 306 29 HOH HOH . G 3 HOH A 7 307 41 HOH HOH . G 3 HOH A 8 308 43 HOH HOH . G 3 HOH A 9 309 56 HOH HOH . G 3 HOH A 10 310 65 HOH HOH . G 3 HOH A 11 311 72 HOH HOH . G 3 HOH A 12 312 77 HOH HOH . G 3 HOH A 13 313 81 HOH HOH . G 3 HOH A 14 314 83 HOH HOH . G 3 HOH A 15 315 85 HOH HOH . G 3 HOH A 16 316 87 HOH HOH . G 3 HOH A 17 317 90 HOH HOH . G 3 HOH A 18 318 91 HOH HOH . G 3 HOH A 19 319 93 HOH HOH . G 3 HOH A 20 320 94 HOH HOH . G 3 HOH A 21 321 95 HOH HOH . G 3 HOH A 22 322 96 HOH HOH . G 3 HOH A 23 323 100 HOH HOH . G 3 HOH A 24 324 120 HOH HOH . G 3 HOH A 25 325 130 HOH HOH . G 3 HOH A 26 326 136 HOH HOH . G 3 HOH A 27 327 143 HOH HOH . G 3 HOH A 28 328 157 HOH HOH . G 3 HOH A 29 329 161 HOH HOH . G 3 HOH A 30 330 170 HOH HOH . G 3 HOH A 31 331 171 HOH HOH . G 3 HOH A 32 332 182 HOH HOH . G 3 HOH A 33 333 183 HOH HOH . G 3 HOH A 34 334 186 HOH HOH . G 3 HOH A 35 335 188 HOH HOH . G 3 HOH A 36 336 191 HOH HOH . G 3 HOH A 37 337 192 HOH HOH . G 3 HOH A 38 338 202 HOH HOH . G 3 HOH A 39 339 204 HOH HOH . G 3 HOH A 40 340 220 HOH HOH . G 3 HOH A 41 341 228 HOH HOH . H 3 HOH C 1 301 5 HOH HOH . H 3 HOH C 2 302 6 HOH HOH . H 3 HOH C 3 303 12 HOH HOH . H 3 HOH C 4 304 28 HOH HOH . H 3 HOH C 5 305 30 HOH HOH . H 3 HOH C 6 306 33 HOH HOH . H 3 HOH C 7 307 34 HOH HOH . H 3 HOH C 8 308 37 HOH HOH . H 3 HOH C 9 309 38 HOH HOH . H 3 HOH C 10 310 48 HOH HOH . H 3 HOH C 11 311 78 HOH HOH . H 3 HOH C 12 312 79 HOH HOH . H 3 HOH C 13 313 97 HOH HOH . H 3 HOH C 14 314 102 HOH HOH . H 3 HOH C 15 315 106 HOH HOH . H 3 HOH C 16 316 110 HOH HOH . H 3 HOH C 17 317 111 HOH HOH . H 3 HOH C 18 318 113 HOH HOH . H 3 HOH C 19 319 115 HOH HOH . H 3 HOH C 20 320 121 HOH HOH . H 3 HOH C 21 321 124 HOH HOH . H 3 HOH C 22 322 127 HOH HOH . H 3 HOH C 23 323 129 HOH HOH . H 3 HOH C 24 324 131 HOH HOH . H 3 HOH C 25 325 138 HOH HOH . H 3 HOH C 26 326 148 HOH HOH . H 3 HOH C 27 327 151 HOH HOH . H 3 HOH C 28 328 159 HOH HOH . H 3 HOH C 29 329 162 HOH HOH . H 3 HOH C 30 330 163 HOH HOH . H 3 HOH C 31 331 172 HOH HOH . H 3 HOH C 32 332 173 HOH HOH . H 3 HOH C 33 333 177 HOH HOH . H 3 HOH C 34 334 207 HOH HOH . I 3 HOH E 1 301 4 HOH HOH . I 3 HOH E 2 302 11 HOH HOH . I 3 HOH E 3 303 17 HOH HOH . I 3 HOH E 4 304 32 HOH HOH . I 3 HOH E 5 305 44 HOH HOH . I 3 HOH E 6 306 45 HOH HOH . I 3 HOH E 7 307 51 HOH HOH . I 3 HOH E 8 308 54 HOH HOH . I 3 HOH E 9 309 66 HOH HOH . I 3 HOH E 10 310 67 HOH HOH . I 3 HOH E 11 311 75 HOH HOH . I 3 HOH E 12 312 76 HOH HOH . I 3 HOH E 13 313 84 HOH HOH . I 3 HOH E 14 314 92 HOH HOH . I 3 HOH E 15 315 101 HOH HOH . I 3 HOH E 16 316 104 HOH HOH . I 3 HOH E 17 317 107 HOH HOH . I 3 HOH E 18 318 108 HOH HOH . I 3 HOH E 19 319 114 HOH HOH . I 3 HOH E 20 320 118 HOH HOH . I 3 HOH E 21 321 123 HOH HOH . I 3 HOH E 22 322 125 HOH HOH . I 3 HOH E 23 323 126 HOH HOH . I 3 HOH E 24 324 132 HOH HOH . I 3 HOH E 25 325 135 HOH HOH . I 3 HOH E 26 326 137 HOH HOH . I 3 HOH E 27 327 139 HOH HOH . I 3 HOH E 28 328 140 HOH HOH . I 3 HOH E 29 329 144 HOH HOH . I 3 HOH E 30 330 146 HOH HOH . I 3 HOH E 31 331 149 HOH HOH . I 3 HOH E 32 332 152 HOH HOH . I 3 HOH E 33 333 154 HOH HOH . I 3 HOH E 34 334 156 HOH HOH . I 3 HOH E 35 335 164 HOH HOH . I 3 HOH E 36 336 174 HOH HOH . I 3 HOH E 37 337 180 HOH HOH . I 3 HOH E 38 338 189 HOH HOH . I 3 HOH E 39 339 190 HOH HOH . I 3 HOH E 40 340 194 HOH HOH . I 3 HOH E 41 341 209 HOH HOH . I 3 HOH E 42 342 216 HOH HOH . I 3 HOH E 43 343 223 HOH HOH . I 3 HOH E 44 344 230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C17 0R3 . . . F 2 -20.663 -8.775 -32.53 1 21.69 ? C17 0R3 201 E 1 HETATM 2 C C16 0R3 . . . F 2 -20.208 -7.461 -32.432 1 20.81 ? C16 0R3 201 E 1 HETATM 3 CL CL2 0R3 . . . F 2 -18.794 -7.149 -31.605 1 22.71 ? CL2 0R3 201 E 1 HETATM 4 C C15 0R3 . . . F 2 -20.851 -6.393 -33.027 1 21.63 ? C15 0R3 201 E 1 HETATM 5 C C14 0R3 . . . F 2 -22.025 -6.642 -33.777 1 21.76 ? C14 0R3 201 E 1 HETATM 6 C C13 0R3 . . . F 2 -22.51 -7.951 -33.903 1 21.06 ? C13 0R3 201 E 1 HETATM 7 C C6 0R3 . . . F 2 -21.833 -9.026 -33.282 1 22.5 ? C6 0R3 201 E 1 HETATM 8 C C2 0R3 . . . F 2 -22.341 -10.451 -33.452 1 23.58 ? C2 0R3 201 E 1 HETATM 9 C C3 0R3 . . . F 2 -23.789 -10.651 -33.068 1 24.27 ? C3 0R3 201 E 1 HETATM 10 C C4 0R3 . . . F 2 -24.17 -12.146 -33.004 1 25.14 ? C4 0R3 201 E 1 HETATM 11 C C23 0R3 . . . F 2 -23.719 -12.882 -31.745 1 26.14 ? C23 0R3 201 E 1 HETATM 12 C C25 0R3 . . . F 2 -24.534 -12.395 -30.517 1 29.22 ? C25 0R3 201 E 1 HETATM 13 O O3 0R3 . . . F 2 -24.618 -11.25 -30.238 1 28.89 ? O3 0R3 201 E 1 HETATM 14 O O2 0R3 . . . F 2 -25.148 -13.36 -29.769 1 32.81 ? O2 0R3 201 E 1 HETATM 15 C C24 0R3 . . . F 2 -25.712 -12.223 -33.206 1 25.77 ? C24 0R3 201 E 1 HETATM 16 C C5 0R3 . . . F 2 -23.573 -12.969 -34.154 1 25.07 ? C5 0R3 201 E 1 HETATM 17 O O1 0R3 . . . F 2 -23.92 -14.141 -34.273 1 24.77 ? O1 0R3 201 E 1 HETATM 18 N N1 0R3 . . . F 2 -22.675 -12.398 -35.014 1 26.03 ? N1 0R3 201 E 1 HETATM 19 C C18 0R3 . . . F 2 -22.427 -13.082 -36.29 1 25.47 ? C18 0R3 201 E 1 HETATM 20 C C19 0R3 . . . F 2 -21.791 -14.483 -36.006 1 25.12 ? C19 0R3 201 E 1 HETATM 21 C C22 0R3 . . . F 2 -20.397 -14.636 -36.6 1 24.66 ? C22 0R3 201 E 1 HETATM 22 C C20 0R3 . . . F 2 -23.664 -13.073 -37.203 1 27.43 ? C20 0R3 201 E 1 HETATM 23 O O4 0R3 . . . F 2 -24.194 -11.791 -37.407 1 29 ? O4 0R3 201 E 1 HETATM 24 C C21 0R3 . . . F 2 -23.329 -13.661 -38.574 1 29.27 ? C21 0R3 201 E 1 HETATM 25 C C1 0R3 . . . F 2 -21.936 -11.147 -34.749 1 23.15 ? C1 0R3 201 E 1 HETATM 26 C C7 0R3 . . . F 2 -20.442 -11.193 -34.978 1 20.79 ? C7 0R3 201 E 1 HETATM 27 C C8 0R3 . . . F 2 -19.593 -11.992 -34.183 1 20.27 ? C8 0R3 201 E 1 HETATM 28 C C9 0R3 . . . F 2 -18.194 -11.95 -34.379 1 20.69 ? C9 0R3 201 E 1 HETATM 29 C C10 0R3 . . . F 2 -17.664 -11.102 -35.372 1 21.03 ? C10 0R3 201 E 1 HETATM 30 CL CL1 0R3 . . . F 2 -15.961 -10.956 -35.589 1 24.59 ? CL1 0R3 201 E 1 HETATM 31 C C11 0R3 . . . F 2 -18.481 -10.311 -36.18 1 20.37 ? C11 0R3 201 E 1 HETATM 32 C C12 0R3 . . . F 2 -19.867 -10.361 -35.983 1 20.59 ? C12 0R3 201 E 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #