data_4ERP # _model_server_result.job_id 44k5Oa0z5dz658DkXRQYzw _model_server_result.datetime_utc '2024-11-07 08:42:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4erp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":501}' # _entry.id 4ERP # _exptl.entry_id 4ERP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 127.689 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description MU-OXO-DIIRON _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ERP _cell.length_a 128.669 _cell.length_b 398.906 _cell.length_c 319.437 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ERP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octameric 8 author_and_software_defined_assembly 1 PISA octameric 8 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,H,I,J,N,P,R,T 1 1,2 C,D,E,G,K,L,M,O,Q,S 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 159.7185 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E OD2 ASP 84 E ASP 84 1_555 M FE1 FEO . E FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc2 E OD1 ASP 84 E ASP 84 1_555 M FE1 FEO . E FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc3 E OE2 GLU 115 E GLU 115 1_555 M FE2 FEO . E FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? metalc ? metalc4 E OE1 GLU 115 E GLU 115 1_555 M FE1 FEO . E FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? metalc ? metalc5 E ND1 HIS 118 E HIS 118 1_555 M FE1 FEO . E FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc6 E OE1 GLU 204 E GLU 204 1_555 M FE2 FEO . E FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc7 E OE1 GLU 238 E GLU 238 1_555 M FE2 FEO . E FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc8 E ND1 HIS 241 E HIS 241 1_555 M FE2 FEO . E FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc9 M FE1 FEO . E FEO 501 1_555 Q O HOH . E HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc10 M FE2 FEO . E FEO 501 1_555 Q O HOH . E HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc11 F OD2 ASP 84 F ASP 84 1_555 N FE1 FEO . F FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc12 F OD1 ASP 84 F ASP 84 1_555 N FE1 FEO . F FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc13 F OE2 GLU 115 F GLU 115 1_555 N FE2 FEO . F FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.772 ? metalc ? metalc14 F OE1 GLU 115 F GLU 115 1_555 N FE1 FEO . F FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc15 F ND1 HIS 118 F HIS 118 1_555 N FE1 FEO . F FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc16 F OE1 GLU 204 F GLU 204 1_555 N FE2 FEO . F FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc17 F OE1 GLU 238 F GLU 238 1_555 N FE2 FEO . F FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc18 F ND1 HIS 241 F HIS 241 1_555 N FE2 FEO . F FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc19 N FE1 FEO . F FEO 501 1_555 R O HOH . F HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc20 N FE2 FEO . F FEO 501 1_555 R O HOH . F HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc21 G OD2 ASP 84 G ASP 84 1_555 O FE1 FEO . G FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc22 G OD1 ASP 84 G ASP 84 1_555 O FE1 FEO . G FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc23 G OE1 GLU 115 G GLU 115 1_555 O FE1 FEO . G FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? metalc ? metalc24 G OE2 GLU 115 G GLU 115 1_555 O FE2 FEO . G FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc25 G ND1 HIS 118 G HIS 118 1_555 O FE1 FEO . G FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc26 G OE1 GLU 204 G GLU 204 1_555 O FE2 FEO . G FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc27 G OE1 GLU 238 G GLU 238 1_555 O FE2 FEO . G FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc28 G ND1 HIS 241 G HIS 241 1_555 O FE2 FEO . G FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc29 O FE2 FEO . G FEO 501 1_555 S O HOH . G HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc30 O FE1 FEO . G FEO 501 1_555 S O HOH . G HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc31 H OD2 ASP 84 H ASP 84 1_555 P FE1 FEO . H FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc32 H OD1 ASP 84 H ASP 84 1_555 P FE1 FEO . H FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc33 H OE2 GLU 115 H GLU 115 1_555 P FE2 FEO . H FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.719 ? metalc ? metalc34 H OE1 GLU 115 H GLU 115 1_555 P FE1 FEO . H FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? metalc ? metalc35 H ND1 HIS 118 H HIS 118 1_555 P FE1 FEO . H FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc36 H OE1 GLU 204 H GLU 204 1_555 P FE2 FEO . H FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc37 H OE1 GLU 238 H GLU 238 1_555 P FE2 FEO . H FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc38 H ND1 HIS 241 H HIS 241 1_555 P FE2 FEO . H FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc39 P FE2 FEO . H FEO 501 1_555 T O HOH . H HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc40 P FE1 FEO . H FEO 501 1_555 T O HOH . H HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? # _chem_comp.formula 'Fe2 O' _chem_comp.formula_weight 127.689 _chem_comp.id FEO _chem_comp.mon_nstd_flag . _chem_comp.name MU-OXO-DIIRON _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 O FEO sing 132 n n FE2 O FEO sing 133 n n # _atom_sites.entry_id 4ERP _atom_sites.fract_transf_matrix[1][1] 0.007772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003131 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ATP A 1 801 762 ATP ATP . J 3 ATP B 1 801 762 ATP ATP . K 3 ATP C 1 801 762 ATP ATP . L 3 ATP D 1 801 762 ATP ATP . M 4 FEO E 1 501 501 FEO FEO . N 4 FEO F 1 501 501 FEO FEO . O 4 FEO G 1 501 501 FEO FEO . P 4 FEO H 1 501 501 FEO FEO . Q 5 HOH E 1 601 2 HOH HOH . Q 5 HOH E 2 602 3 HOH HOH . R 5 HOH F 1 601 4 HOH HOH . R 5 HOH F 2 602 5 HOH HOH . S 5 HOH G 1 601 8 HOH HOH . S 5 HOH G 2 602 9 HOH HOH . T 5 HOH H 1 601 11 HOH HOH . T 5 HOH H 2 602 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FEO . . . M 4 -3.354 -60.033 67.731 1 119.73 ? FE1 FEO 501 E 1 HETATM 2 FE FE2 FEO . . . M 4 -6.322 -58.865 68.995 1 119.73 ? FE2 FEO 501 E 1 HETATM 3 O O FEO . . . M 4 -5.316 -60.399 68.126 1 119.73 ? O FEO 501 E 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 3 #