data_4ERP # _model_server_result.job_id K6j81YlmWTedVPlxZHlktQ _model_server_result.datetime_utc '2024-11-23 07:35:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4erp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":801}' # _entry.id 4ERP # _exptl.entry_id 4ERP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ERP _cell.length_a 128.669 _cell.length_b 398.906 _cell.length_c 319.437 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ERP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octameric 8 author_and_software_defined_assembly 1 PISA octameric 8 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,H,I,J,N,P,R,T 1 1,2 C,D,E,G,K,L,M,O,Q,S 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 159.7185 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E OD2 ASP 84 E ASP 84 1_555 M FE1 FEO . E FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc2 E OD1 ASP 84 E ASP 84 1_555 M FE1 FEO . E FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc3 E OE2 GLU 115 E GLU 115 1_555 M FE2 FEO . E FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? metalc ? metalc4 E OE1 GLU 115 E GLU 115 1_555 M FE1 FEO . E FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? metalc ? metalc5 E ND1 HIS 118 E HIS 118 1_555 M FE1 FEO . E FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc6 E OE1 GLU 204 E GLU 204 1_555 M FE2 FEO . E FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc7 E OE1 GLU 238 E GLU 238 1_555 M FE2 FEO . E FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc8 E ND1 HIS 241 E HIS 241 1_555 M FE2 FEO . E FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc9 M FE1 FEO . E FEO 501 1_555 Q O HOH . E HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc10 M FE2 FEO . E FEO 501 1_555 Q O HOH . E HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc11 F OD2 ASP 84 F ASP 84 1_555 N FE1 FEO . F FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc12 F OD1 ASP 84 F ASP 84 1_555 N FE1 FEO . F FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc13 F OE2 GLU 115 F GLU 115 1_555 N FE2 FEO . F FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.772 ? metalc ? metalc14 F OE1 GLU 115 F GLU 115 1_555 N FE1 FEO . F FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc15 F ND1 HIS 118 F HIS 118 1_555 N FE1 FEO . F FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc16 F OE1 GLU 204 F GLU 204 1_555 N FE2 FEO . F FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc17 F OE1 GLU 238 F GLU 238 1_555 N FE2 FEO . F FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc18 F ND1 HIS 241 F HIS 241 1_555 N FE2 FEO . F FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc19 N FE1 FEO . F FEO 501 1_555 R O HOH . F HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc20 N FE2 FEO . F FEO 501 1_555 R O HOH . F HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc21 G OD2 ASP 84 G ASP 84 1_555 O FE1 FEO . G FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc22 G OD1 ASP 84 G ASP 84 1_555 O FE1 FEO . G FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc23 G OE1 GLU 115 G GLU 115 1_555 O FE1 FEO . G FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? metalc ? metalc24 G OE2 GLU 115 G GLU 115 1_555 O FE2 FEO . G FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc25 G ND1 HIS 118 G HIS 118 1_555 O FE1 FEO . G FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc26 G OE1 GLU 204 G GLU 204 1_555 O FE2 FEO . G FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc27 G OE1 GLU 238 G GLU 238 1_555 O FE2 FEO . G FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc28 G ND1 HIS 241 G HIS 241 1_555 O FE2 FEO . G FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc29 O FE2 FEO . G FEO 501 1_555 S O HOH . G HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc30 O FE1 FEO . G FEO 501 1_555 S O HOH . G HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc31 H OD2 ASP 84 H ASP 84 1_555 P FE1 FEO . H FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc32 H OD1 ASP 84 H ASP 84 1_555 P FE1 FEO . H FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc33 H OE2 GLU 115 H GLU 115 1_555 P FE2 FEO . H FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.719 ? metalc ? metalc34 H OE1 GLU 115 H GLU 115 1_555 P FE1 FEO . H FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? metalc ? metalc35 H ND1 HIS 118 H HIS 118 1_555 P FE1 FEO . H FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc36 H OE1 GLU 204 H GLU 204 1_555 P FE2 FEO . H FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc37 H OE1 GLU 238 H GLU 238 1_555 P FE2 FEO . H FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc38 H ND1 HIS 241 H HIS 241 1_555 P FE2 FEO . H FEO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc39 P FE2 FEO . H FEO 501 1_555 T O HOH . H HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc40 P FE1 FEO . H FEO 501 1_555 T O HOH . H HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4ERP _atom_sites.fract_transf_matrix[1][1] 0.007772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003131 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ATP A 1 801 762 ATP ATP . J 3 ATP B 1 801 762 ATP ATP . K 3 ATP C 1 801 762 ATP ATP . L 3 ATP D 1 801 762 ATP ATP . M 4 FEO E 1 501 501 FEO FEO . N 4 FEO F 1 501 501 FEO FEO . O 4 FEO G 1 501 501 FEO FEO . P 4 FEO H 1 501 501 FEO FEO . Q 5 HOH E 1 601 2 HOH HOH . Q 5 HOH E 2 602 3 HOH HOH . R 5 HOH F 1 601 4 HOH HOH . R 5 HOH F 2 602 5 HOH HOH . S 5 HOH G 1 601 8 HOH HOH . S 5 HOH G 2 602 9 HOH HOH . T 5 HOH H 1 601 11 HOH HOH . T 5 HOH H 2 602 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . J 3 30.134 -5.408 33.032 1 225.37 ? PG ATP 801 B 1 HETATM 2 O O1G ATP . . . J 3 30.006 -5.472 34.545 1 225.37 ? O1G ATP 801 B 1 HETATM 3 O O2G ATP . . . J 3 31.317 -4.474 32.668 1 225.37 ? O2G ATP 801 B 1 HETATM 4 O O3G ATP . . . J 3 28.842 -4.841 32.444 1 225.37 ? O3G ATP 801 B 1 HETATM 5 P PB ATP . . . J 3 29.987 -8.167 33.157 1 225.37 ? PB ATP 801 B 1 HETATM 6 O O1B ATP . . . J 3 29.518 -8.013 34.623 1 225.37 ? O1B ATP 801 B 1 HETATM 7 O O2B ATP . . . J 3 31.182 -9.145 33.199 1 225.37 ? O2B ATP 801 B 1 HETATM 8 O O3B ATP . . . J 3 30.412 -6.838 32.431 1 225.37 ? O3B ATP 801 B 1 HETATM 9 P PA ATP . . . J 3 27.39 -8.256 32.375 1 225.37 ? PA ATP 801 B 1 HETATM 10 O O1A ATP . . . J 3 27.277 -6.945 31.6 1 225.37 ? O1A ATP 801 B 1 HETATM 11 O O2A ATP . . . J 3 26.446 -9.295 31.738 1 225.37 ? O2A ATP 801 B 1 HETATM 12 O O3A ATP . . . J 3 28.839 -8.833 32.34 1 225.37 ? O3A ATP 801 B 1 HETATM 13 O O5' ATP . . . J 3 26.847 -7.936 33.832 1 225.37 ? O5' ATP 801 B 1 HETATM 14 C C5' ATP . . . J 3 26.526 -9.023 34.7 1 225.37 ? C5' ATP 801 B 1 HETATM 15 C C4' ATP . . . J 3 25.606 -8.744 35.894 1 225.37 ? C4' ATP 801 B 1 HETATM 16 O O4' ATP . . . J 3 26.261 -8.718 37.112 1 225.37 ? O4' ATP 801 B 1 HETATM 17 C C3' ATP . . . J 3 24.848 -7.466 35.756 1 225.37 ? C3' ATP 801 B 1 HETATM 18 O O3' ATP . . . J 3 23.56 -7.744 36.114 1 225.37 ? O3' ATP 801 B 1 HETATM 19 C C2' ATP . . . J 3 25.439 -6.542 36.641 1 225.37 ? C2' ATP 801 B 1 HETATM 20 O O2' ATP . . . J 3 24.445 -5.946 37.396 1 225.37 ? O2' ATP 801 B 1 HETATM 21 C C1' ATP . . . J 3 26.17 -7.335 37.637 1 225.37 ? C1' ATP 801 B 1 HETATM 22 N N9 ATP . . . J 3 27.395 -6.643 37.973 1 225.37 ? N9 ATP 801 B 1 HETATM 23 C C8 ATP . . . J 3 28.265 -6.075 37.143 1 225.37 ? C8 ATP 801 B 1 HETATM 24 N N7 ATP . . . J 3 29.271 -5.539 37.859 1 225.37 ? N7 ATP 801 B 1 HETATM 25 C C5 ATP . . . J 3 29.016 -5.777 39.153 1 225.37 ? C5 ATP 801 B 1 HETATM 26 C C6 ATP . . . J 3 29.689 -5.468 40.331 1 225.37 ? C6 ATP 801 B 1 HETATM 27 N N6 ATP . . . J 3 30.977 -4.709 40.287 1 225.37 ? N6 ATP 801 B 1 HETATM 28 N N1 ATP . . . J 3 29.184 -5.845 41.514 1 225.37 ? N1 ATP 801 B 1 HETATM 29 C C2 ATP . . . J 3 28.027 -6.524 41.557 1 225.37 ? C2 ATP 801 B 1 HETATM 30 N N3 ATP . . . J 3 27.354 -6.838 40.432 1 225.37 ? N3 ATP 801 B 1 HETATM 31 C C4 ATP . . . J 3 27.829 -6.477 39.231 1 225.37 ? C4 ATP 801 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #