data_4ERS # _model_server_result.job_id 0qZpTMhfGfw73YV2duz7hw _model_server_result.datetime_utc '2024-11-07 15:33:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ers # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 4ERS # _exptl.entry_id 4ERS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.91 _cell.angle_gamma 90 _cell.entry_id 4ERS _cell.length_a 46.41 _cell.length_b 62.25 _cell.length_c 104.94 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ERS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,E,H 1 1 A,B,F,G 1 2 A,B,C,D,E,F,G,H 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 -7.155798 31.125 104.695741 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 134 L CYS 134 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 214 L CYS 214 1_555 B SG CYS 231 H CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 22 H CYS 236 1_555 B SG CYS 96 H CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 B SG CYS 155 H CYS 369 1_555 B SG CYS 211 H CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 C SG CYS 16 A CYS 43 1_555 C SG CYS 40 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf7 C SG CYS 31 A CYS 58 1_555 C SG CYS 73 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 C SG CYS 54 A CYS 81 1_555 C SG CYS 94 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 C ND2 ASN 47 A ASN 74 1_555 E C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? covale ? covale2 C ND2 ASN 51 A ASN 78 1_555 D C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.006 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4ERS _atom_sites.fract_transf_matrix[1][1] 0.021547 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001473 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 201 1 NAG NAG . E 4 NAG A 1 202 2 NAG NAG . F 5 HOH L 1 301 5 HOH HOH . F 5 HOH L 2 302 6 HOH HOH . F 5 HOH L 3 303 7 HOH HOH . F 5 HOH L 4 304 13 HOH HOH . F 5 HOH L 5 305 15 HOH HOH . F 5 HOH L 6 306 16 HOH HOH . F 5 HOH L 7 307 27 HOH HOH . F 5 HOH L 8 308 47 HOH HOH . F 5 HOH L 9 309 50 HOH HOH . F 5 HOH L 10 310 51 HOH HOH . F 5 HOH L 11 311 53 HOH HOH . F 5 HOH L 12 312 63 HOH HOH . F 5 HOH L 13 313 67 HOH HOH . F 5 HOH L 14 314 75 HOH HOH . F 5 HOH L 15 315 78 HOH HOH . F 5 HOH L 16 316 81 HOH HOH . F 5 HOH L 17 317 82 HOH HOH . F 5 HOH L 18 318 90 HOH HOH . F 5 HOH L 19 319 95 HOH HOH . F 5 HOH L 20 320 96 HOH HOH . F 5 HOH L 21 321 99 HOH HOH . F 5 HOH L 22 322 105 HOH HOH . F 5 HOH L 23 323 106 HOH HOH . F 5 HOH L 24 324 108 HOH HOH . F 5 HOH L 25 325 123 HOH HOH . F 5 HOH L 26 326 126 HOH HOH . F 5 HOH L 27 327 129 HOH HOH . G 5 HOH H 1 501 3 HOH HOH . G 5 HOH H 2 502 10 HOH HOH . G 5 HOH H 3 503 12 HOH HOH . G 5 HOH H 4 504 18 HOH HOH . G 5 HOH H 5 505 25 HOH HOH . G 5 HOH H 6 506 26 HOH HOH . G 5 HOH H 7 507 28 HOH HOH . G 5 HOH H 8 508 29 HOH HOH . G 5 HOH H 9 509 31 HOH HOH . G 5 HOH H 10 510 32 HOH HOH . G 5 HOH H 11 511 33 HOH HOH . G 5 HOH H 12 512 37 HOH HOH . G 5 HOH H 13 513 41 HOH HOH . G 5 HOH H 14 514 43 HOH HOH . G 5 HOH H 15 515 44 HOH HOH . G 5 HOH H 16 516 54 HOH HOH . G 5 HOH H 17 517 55 HOH HOH . G 5 HOH H 18 518 56 HOH HOH . G 5 HOH H 19 519 57 HOH HOH . G 5 HOH H 20 520 59 HOH HOH . G 5 HOH H 21 521 62 HOH HOH . G 5 HOH H 22 522 64 HOH HOH . G 5 HOH H 23 523 66 HOH HOH . G 5 HOH H 24 524 69 HOH HOH . G 5 HOH H 25 525 71 HOH HOH . G 5 HOH H 26 526 80 HOH HOH . G 5 HOH H 27 527 83 HOH HOH . G 5 HOH H 28 528 84 HOH HOH . G 5 HOH H 29 529 87 HOH HOH . G 5 HOH H 30 530 89 HOH HOH . G 5 HOH H 31 531 98 HOH HOH . G 5 HOH H 32 532 100 HOH HOH . G 5 HOH H 33 533 110 HOH HOH . G 5 HOH H 34 534 111 HOH HOH . G 5 HOH H 35 535 117 HOH HOH . G 5 HOH H 36 536 118 HOH HOH . G 5 HOH H 37 537 127 HOH HOH . G 5 HOH H 38 538 128 HOH HOH . H 5 HOH A 1 301 4 HOH HOH . H 5 HOH A 2 302 8 HOH HOH . H 5 HOH A 3 303 11 HOH HOH . H 5 HOH A 4 304 24 HOH HOH . H 5 HOH A 5 305 35 HOH HOH . H 5 HOH A 6 306 52 HOH HOH . H 5 HOH A 7 307 65 HOH HOH . H 5 HOH A 8 308 73 HOH HOH . H 5 HOH A 9 309 79 HOH HOH . H 5 HOH A 10 310 116 HOH HOH . H 5 HOH A 11 311 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 -9.727 -501.227 75.136 1 20 ? C1 NAG 202 A 1 HETATM 2 C C2 NAG . . . E 4 -11.034 -501.968 74.956 1 20 ? C2 NAG 202 A 1 HETATM 3 C C3 NAG . . . E 4 -12.248 -501.191 75.463 1 20 ? C3 NAG 202 A 1 HETATM 4 C C4 NAG . . . E 4 -11.966 -500.494 76.775 1 20 ? C4 NAG 202 A 1 HETATM 5 C C5 NAG . . . E 4 -10.661 -499.72 76.647 1 20 ? C5 NAG 202 A 1 HETATM 6 C C6 NAG . . . E 4 -10.306 -499.008 77.937 1 20 ? C6 NAG 202 A 1 HETATM 7 C C7 NAG . . . E 4 -11.1 -503.237 72.871 1 20 ? C7 NAG 202 A 1 HETATM 8 C C8 NAG . . . E 4 -11.012 -504.48 73.699 1 20 ? C8 NAG 202 A 1 HETATM 9 N N2 NAG . . . E 4 -11.12 -502.096 73.527 1 20 ? N2 NAG 202 A 1 HETATM 10 O O3 NAG . . . E 4 -13.289 -502.084 75.748 1 20 ? O3 NAG 202 A 1 HETATM 11 O O4 NAG . . . E 4 -13.068 -499.669 77.139 1 20 ? O4 NAG 202 A 1 HETATM 12 O O5 NAG . . . E 4 -9.669 -500.678 76.422 1 20 ? O5 NAG 202 A 1 HETATM 13 O O6 NAG . . . E 4 -9.752 -499.966 78.801 1 20 ? O6 NAG 202 A 1 HETATM 14 O O7 NAG . . . E 4 -11.155 -503.262 71.645 1 20 ? O7 NAG 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #