data_4ERV # _model_server_result.job_id otrfpVCXZi-0iaiZ33xVlw _model_server_result.datetime_utc '2025-02-05 15:04:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4erv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2906}' # _entry.id 4ERV # _exptl.entry_id 4ERV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.21 _cell.angle_gamma 90 _cell.entry_id 4ERV _cell.length_a 93.57 _cell.length_b 58.54 _cell.length_c 47.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ERV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 93.57 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4ERV _atom_sites.fract_transf_matrix[1][1] 0.010687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001352 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 2901 1 SO4 SO4 . C 2 SO4 A 1 2902 2 SO4 SO4 . D 2 SO4 A 1 2903 3 SO4 SO4 . E 3 GOL A 1 2904 3 GOL GOL . F 3 GOL A 1 2905 1 GOL GOL . G 3 GOL A 1 2906 2 GOL GOL . H 4 HOH A 1 3001 1 HOH HOH . H 4 HOH A 2 3002 2 HOH HOH . H 4 HOH A 3 3003 3 HOH HOH . H 4 HOH A 4 3004 4 HOH HOH . H 4 HOH A 5 3005 5 HOH HOH . H 4 HOH A 6 3006 6 HOH HOH . H 4 HOH A 7 3007 7 HOH HOH . H 4 HOH A 8 3008 8 HOH HOH . H 4 HOH A 9 3009 9 HOH HOH . H 4 HOH A 10 3010 10 HOH HOH . H 4 HOH A 11 3011 11 HOH HOH . H 4 HOH A 12 3012 12 HOH HOH . H 4 HOH A 13 3013 14 HOH HOH . H 4 HOH A 14 3014 15 HOH HOH . H 4 HOH A 15 3015 16 HOH HOH . H 4 HOH A 16 3016 17 HOH HOH . H 4 HOH A 17 3017 18 HOH HOH . H 4 HOH A 18 3018 19 HOH HOH . H 4 HOH A 19 3019 20 HOH HOH . H 4 HOH A 20 3020 21 HOH HOH . H 4 HOH A 21 3021 22 HOH HOH . H 4 HOH A 22 3022 24 HOH HOH . H 4 HOH A 23 3023 25 HOH HOH . H 4 HOH A 24 3024 26 HOH HOH . H 4 HOH A 25 3025 27 HOH HOH . H 4 HOH A 26 3026 28 HOH HOH . H 4 HOH A 27 3027 29 HOH HOH . H 4 HOH A 28 3028 30 HOH HOH . H 4 HOH A 29 3029 31 HOH HOH . H 4 HOH A 30 3030 32 HOH HOH . H 4 HOH A 31 3031 33 HOH HOH . H 4 HOH A 32 3032 34 HOH HOH . H 4 HOH A 33 3033 35 HOH HOH . H 4 HOH A 34 3034 36 HOH HOH . H 4 HOH A 35 3035 38 HOH HOH . H 4 HOH A 36 3036 39 HOH HOH . H 4 HOH A 37 3037 40 HOH HOH . H 4 HOH A 38 3038 41 HOH HOH . H 4 HOH A 39 3039 42 HOH HOH . H 4 HOH A 40 3040 43 HOH HOH . H 4 HOH A 41 3041 44 HOH HOH . H 4 HOH A 42 3042 45 HOH HOH . H 4 HOH A 43 3043 46 HOH HOH . H 4 HOH A 44 3044 47 HOH HOH . H 4 HOH A 45 3045 48 HOH HOH . H 4 HOH A 46 3046 49 HOH HOH . H 4 HOH A 47 3047 50 HOH HOH . H 4 HOH A 48 3048 51 HOH HOH . H 4 HOH A 49 3049 52 HOH HOH . H 4 HOH A 50 3050 53 HOH HOH . H 4 HOH A 51 3051 54 HOH HOH . H 4 HOH A 52 3052 55 HOH HOH . H 4 HOH A 53 3053 56 HOH HOH . H 4 HOH A 54 3054 57 HOH HOH . H 4 HOH A 55 3055 58 HOH HOH . H 4 HOH A 56 3056 59 HOH HOH . H 4 HOH A 57 3057 61 HOH HOH . H 4 HOH A 58 3058 62 HOH HOH . H 4 HOH A 59 3059 63 HOH HOH . H 4 HOH A 60 3060 64 HOH HOH . H 4 HOH A 61 3061 65 HOH HOH . H 4 HOH A 62 3062 66 HOH HOH . H 4 HOH A 63 3063 67 HOH HOH . H 4 HOH A 64 3064 68 HOH HOH . H 4 HOH A 65 3065 69 HOH HOH . H 4 HOH A 66 3066 70 HOH HOH . H 4 HOH A 67 3067 71 HOH HOH . H 4 HOH A 68 3068 72 HOH HOH . H 4 HOH A 69 3069 74 HOH HOH . H 4 HOH A 70 3070 75 HOH HOH . H 4 HOH A 71 3071 76 HOH HOH . H 4 HOH A 72 3072 77 HOH HOH . H 4 HOH A 73 3073 78 HOH HOH . H 4 HOH A 74 3074 79 HOH HOH . H 4 HOH A 75 3075 80 HOH HOH . H 4 HOH A 76 3076 81 HOH HOH . H 4 HOH A 77 3077 82 HOH HOH . H 4 HOH A 78 3078 84 HOH HOH . H 4 HOH A 79 3079 85 HOH HOH . H 4 HOH A 80 3080 86 HOH HOH . H 4 HOH A 81 3081 88 HOH HOH . H 4 HOH A 82 3082 89 HOH HOH . H 4 HOH A 83 3083 90 HOH HOH . H 4 HOH A 84 3084 91 HOH HOH . H 4 HOH A 85 3085 92 HOH HOH . H 4 HOH A 86 3086 93 HOH HOH . H 4 HOH A 87 3087 94 HOH HOH . H 4 HOH A 88 3088 95 HOH HOH . H 4 HOH A 89 3089 96 HOH HOH . H 4 HOH A 90 3090 98 HOH HOH . H 4 HOH A 91 3091 99 HOH HOH . H 4 HOH A 92 3092 100 HOH HOH . H 4 HOH A 93 3093 101 HOH HOH . H 4 HOH A 94 3094 103 HOH HOH . H 4 HOH A 95 3095 104 HOH HOH . H 4 HOH A 96 3096 105 HOH HOH . H 4 HOH A 97 3097 106 HOH HOH . H 4 HOH A 98 3098 107 HOH HOH . H 4 HOH A 99 3099 108 HOH HOH . H 4 HOH A 100 3100 109 HOH HOH . H 4 HOH A 101 3101 110 HOH HOH . H 4 HOH A 102 3102 111 HOH HOH . H 4 HOH A 103 3103 112 HOH HOH . H 4 HOH A 104 3104 113 HOH HOH . H 4 HOH A 105 3105 115 HOH HOH . H 4 HOH A 106 3106 117 HOH HOH . H 4 HOH A 107 3107 118 HOH HOH . H 4 HOH A 108 3108 119 HOH HOH . H 4 HOH A 109 3109 120 HOH HOH . H 4 HOH A 110 3110 121 HOH HOH . H 4 HOH A 111 3111 122 HOH HOH . H 4 HOH A 112 3112 123 HOH HOH . H 4 HOH A 113 3113 124 HOH HOH . H 4 HOH A 114 3114 125 HOH HOH . H 4 HOH A 115 3115 128 HOH HOH . H 4 HOH A 116 3116 129 HOH HOH . H 4 HOH A 117 3117 130 HOH HOH . H 4 HOH A 118 3118 131 HOH HOH . H 4 HOH A 119 3119 132 HOH HOH . H 4 HOH A 120 3120 133 HOH HOH . H 4 HOH A 121 3121 134 HOH HOH . H 4 HOH A 122 3122 135 HOH HOH . H 4 HOH A 123 3123 136 HOH HOH . H 4 HOH A 124 3124 138 HOH HOH . H 4 HOH A 125 3125 139 HOH HOH . H 4 HOH A 126 3126 140 HOH HOH . H 4 HOH A 127 3127 142 HOH HOH . H 4 HOH A 128 3128 143 HOH HOH . H 4 HOH A 129 3129 144 HOH HOH . H 4 HOH A 130 3130 146 HOH HOH . H 4 HOH A 131 3131 148 HOH HOH . H 4 HOH A 132 3132 149 HOH HOH . H 4 HOH A 133 3133 150 HOH HOH . H 4 HOH A 134 3134 152 HOH HOH . H 4 HOH A 135 3135 153 HOH HOH . H 4 HOH A 136 3136 155 HOH HOH . H 4 HOH A 137 3137 156 HOH HOH . H 4 HOH A 138 3138 157 HOH HOH . H 4 HOH A 139 3139 158 HOH HOH . H 4 HOH A 140 3140 160 HOH HOH . H 4 HOH A 141 3141 161 HOH HOH . H 4 HOH A 142 3142 162 HOH HOH . H 4 HOH A 143 3143 163 HOH HOH . H 4 HOH A 144 3144 164 HOH HOH . H 4 HOH A 145 3145 165 HOH HOH . H 4 HOH A 146 3146 167 HOH HOH . H 4 HOH A 147 3147 168 HOH HOH . H 4 HOH A 148 3148 169 HOH HOH . H 4 HOH A 149 3149 171 HOH HOH . H 4 HOH A 150 3150 172 HOH HOH . H 4 HOH A 151 3151 173 HOH HOH . H 4 HOH A 152 3152 175 HOH HOH . H 4 HOH A 153 3153 176 HOH HOH . H 4 HOH A 154 3154 177 HOH HOH . H 4 HOH A 155 3155 180 HOH HOH . H 4 HOH A 156 3156 181 HOH HOH . H 4 HOH A 157 3157 182 HOH HOH . H 4 HOH A 158 3158 183 HOH HOH . H 4 HOH A 159 3159 188 HOH HOH . H 4 HOH A 160 3160 189 HOH HOH . H 4 HOH A 161 3161 191 HOH HOH . H 4 HOH A 162 3162 192 HOH HOH . H 4 HOH A 163 3163 193 HOH HOH . H 4 HOH A 164 3164 195 HOH HOH . H 4 HOH A 165 3165 196 HOH HOH . H 4 HOH A 166 3166 197 HOH HOH . H 4 HOH A 167 3167 198 HOH HOH . H 4 HOH A 168 3168 199 HOH HOH . H 4 HOH A 169 3169 200 HOH HOH . H 4 HOH A 170 3170 201 HOH HOH . H 4 HOH A 171 3171 202 HOH HOH . H 4 HOH A 172 3172 203 HOH HOH . H 4 HOH A 173 3173 205 HOH HOH . H 4 HOH A 174 3174 206 HOH HOH . H 4 HOH A 175 3175 207 HOH HOH . H 4 HOH A 176 3176 208 HOH HOH . H 4 HOH A 177 3177 209 HOH HOH . H 4 HOH A 178 3178 210 HOH HOH . H 4 HOH A 179 3179 211 HOH HOH . H 4 HOH A 180 3180 213 HOH HOH . H 4 HOH A 181 3181 214 HOH HOH . H 4 HOH A 182 3182 219 HOH HOH . H 4 HOH A 183 3183 220 HOH HOH . H 4 HOH A 184 3184 221 HOH HOH . H 4 HOH A 185 3185 222 HOH HOH . H 4 HOH A 186 3186 223 HOH HOH . H 4 HOH A 187 3187 224 HOH HOH . H 4 HOH A 188 3188 225 HOH HOH . H 4 HOH A 189 3189 226 HOH HOH . H 4 HOH A 190 3190 227 HOH HOH . H 4 HOH A 191 3191 228 HOH HOH . H 4 HOH A 192 3192 229 HOH HOH . H 4 HOH A 193 3193 230 HOH HOH . H 4 HOH A 194 3194 231 HOH HOH . H 4 HOH A 195 3195 233 HOH HOH . H 4 HOH A 196 3196 236 HOH HOH . H 4 HOH A 197 3197 237 HOH HOH . H 4 HOH A 198 3198 238 HOH HOH . H 4 HOH A 199 3199 240 HOH HOH . H 4 HOH A 200 3200 241 HOH HOH . H 4 HOH A 201 3201 243 HOH HOH . H 4 HOH A 202 3202 244 HOH HOH . H 4 HOH A 203 3203 245 HOH HOH . H 4 HOH A 204 3204 246 HOH HOH . H 4 HOH A 205 3205 247 HOH HOH . H 4 HOH A 206 3206 248 HOH HOH . H 4 HOH A 207 3207 249 HOH HOH . H 4 HOH A 208 3208 250 HOH HOH . H 4 HOH A 209 3209 251 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 48.592 30.028 -5.502 1 41.17 ? C1 GOL 2906 A 1 HETATM 2 O O1 GOL . . . G 3 49.807 29.318 -5.43 1 44.3 ? O1 GOL 2906 A 1 HETATM 3 C C2 GOL . . . G 3 47.563 29.275 -6.34 1 40.19 ? C2 GOL 2906 A 1 HETATM 4 O O2 GOL . . . G 3 46.902 28.348 -5.512 1 41.47 ? O2 GOL 2906 A 1 HETATM 5 C C3 GOL . . . G 3 46.537 30.258 -6.911 1 37.62 ? C3 GOL 2906 A 1 HETATM 6 O O3 GOL . . . G 3 45.649 29.592 -7.774 1 35.75 ? O3 GOL 2906 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 6 #