data_4ESV
#
_model_server_result.job_id            f7RQDkVb5soEsikCfl-Mag 
_model_server_result.datetime_utc      '2025-08-31 08:44:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4esv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":503}' 
#
_entry.id    4ESV 
#
_exptl.entry_id    4ESV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4ESV 
_cell.length_a            149.124 
_cell.length_b            180.321 
_cell.length_c            279.128 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ESV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        17 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA heptameric 7 author_and_software_defined_assembly 1 
? heptameric 7 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,AB,BB,CB,DB 1 1 
B,I,J,K,L,M,N,O,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,EB 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 P N N 
? 5 R N N 
? 5 T N N 
? 5 U N N 
? 5 V N N 
? 5 W N N 
? 5 Y N N 
? 5 DA N N 
? 5 FA N N 
? 5 HA N N 
? 5 LA N N 
? 5 OA N N 
? 5 QA N N 
? 5 ZA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C OG SER 213 A SER 213 1_555 U CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? 
metalc ? metalc2 C OG1 THR 217 A THR 217 1_555 R CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc3 C O SER 378 A SER 378 1_555 T CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.191 ? 
metalc ? metalc4 C OD2 ASP 391 A ASP 391 1_555 V CA CA . A CA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? 
metalc ? metalc5 Q O1B GDP . A GDP 502 1_555 R CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc6 Q O2' GDP . A GDP 502 1_555 U CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.102 ? 
metalc ? metalc7 E OG1 THR 217 C THR 217 1_555 Y CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc8 X O1B GDP . C GDP 501 1_555 Y CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc9 F OG1 THR 217 D THR 217 1_555 DA CA CA . D CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc10 F O ASN 285 D ASN 285 1_555 FA CA CA . D CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc11 CA O1B GDP . D GDP 501 1_555 DA CA CA . D CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc12 G OG1 THR 217 E THR 217 1_555 HA CA CA . E CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc13 GA O1B GDP . E GDP 501 1_555 HA CA CA . E CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc14 H OG1 THR 217 F THR 217 1_555 LA CA CA . F CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc15 KA O1B GDP . F GDP 501 1_555 LA CA CA . F CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc16 K OG1 THR 217 I THR 217 1_555 QA CA CA . I CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? 
metalc ? metalc17 PA O1B GDP . I GDP 501 1_555 QA CA CA . I CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc18 XA O1B GDP . L GDP 501 1_555 ZA CA CA . L CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4ESV 
_atom_sites.fract_transf_matrix[1][1]    0.006706 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005546 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003583 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
O 4 MES W 1 101 9 MES MES . 
P 5 CA A 1 501 17 CA CA . 
Q 6 GDP A 1 502 1 GDP GDP . 
R 5 CA A 1 503 1 CA CA . 
S 7 ALF A 1 504 1 ALF ALF . 
T 5 CA A 1 505 6 CA CA . 
U 5 CA A 1 506 7 CA CA . 
V 5 CA A 1 507 12 CA CA . 
W 5 CA B 1 501 16 CA CA . 
X 6 GDP C 1 501 2 GDP GDP . 
Y 5 CA C 1 502 2 CA CA . 
Z 7 ALF C 1 503 2 ALF ALF . 
AA 7 ALF C 1 504 3 ALF ALF . 
BA 4 MES C 1 505 8 MES MES . 
CA 6 GDP D 1 501 3 GDP GDP . 
DA 5 CA D 1 502 3 CA CA . 
EA 7 ALF D 1 503 4 ALF ALF . 
FA 5 CA D 1 504 13 CA CA . 
GA 6 GDP E 1 501 4 GDP GDP . 
HA 5 CA E 1 502 4 CA CA . 
IA 7 ALF E 1 503 5 ALF ALF . 
JA 4 MES E 1 504 15 MES MES . 
KA 6 GDP F 1 501 5 GDP GDP . 
LA 5 CA F 1 502 5 CA CA . 
MA 6 GDP G 1 501 6 GDP GDP . 
NA 7 ALF G 1 502 6 ALF ALF . 
OA 5 CA G 1 503 14 CA CA . 
PA 6 GDP I 1 501 7 GDP GDP . 
QA 5 CA I 1 502 6 CA CA . 
RA 7 ALF I 1 503 7 ALF ALF . 
SA 4 MES I 1 504 1 MES MES . 
TA 6 GDP J 1 501 8 GDP GDP . 
UA 7 ALF J 1 502 8 ALF ALF . 
VA 6 GDP K 1 501 9 GDP GDP . 
WA 7 ALF K 1 502 9 ALF ALF . 
XA 6 GDP L 1 501 10 GDP GDP . 
YA 7 ALF L 1 502 10 ALF ALF . 
ZA 5 CA L 1 503 10 CA CA . 
AB 8 HOH A 1 601 3 HOH HOH . 
BB 8 HOH B 1 601 2 HOH HOH . 
CB 8 HOH D 1 601 11 HOH HOH . 
DB 8 HOH E 1 601 5 HOH HOH . 
EB 8 HOH K 1 601 4 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         R 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               126.937 
_atom_site.Cartn_y               68.603 
_atom_site.Cartn_z               83.077 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        103.01 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           503 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    369 
_model_server_stats.query_time_ms           629 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#