data_4EUF # _model_server_result.job_id ULVhFrKigIxEWJNd7ItdWQ _model_server_result.datetime_utc '2025-03-05 18:57:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4euf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 4EUF # _exptl.entry_id 4EUF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EUF _cell.length_a 57.687 _cell.length_b 69.964 _cell.length_c 101.629 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EUF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 67 A GLY 47 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? metalc ? metalc2 A O SER 70 A SER 50 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc3 A O SER 158 A SER 138 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc4 B O2N NAD . A NAD 1001 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 4EUF _atom_sites.fract_transf_matrix[1][1] 0.017335 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00984 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 1001 1001 NAD NAD . C 3 NA A 1 1002 1 NA NA . D 4 HOH A 1 1101 1 HOH HOH . D 4 HOH A 2 1102 2 HOH HOH . D 4 HOH A 3 1103 3 HOH HOH . D 4 HOH A 4 1104 4 HOH HOH . D 4 HOH A 5 1105 5 HOH HOH . D 4 HOH A 6 1106 6 HOH HOH . D 4 HOH A 7 1107 7 HOH HOH . D 4 HOH A 8 1108 8 HOH HOH . D 4 HOH A 9 1109 9 HOH HOH . D 4 HOH A 10 1110 10 HOH HOH . D 4 HOH A 11 1111 11 HOH HOH . D 4 HOH A 12 1112 12 HOH HOH . D 4 HOH A 13 1113 13 HOH HOH . D 4 HOH A 14 1114 14 HOH HOH . D 4 HOH A 15 1115 15 HOH HOH . D 4 HOH A 16 1116 16 HOH HOH . D 4 HOH A 17 1117 17 HOH HOH . D 4 HOH A 18 1118 18 HOH HOH . D 4 HOH A 19 1119 19 HOH HOH . D 4 HOH A 20 1120 20 HOH HOH . D 4 HOH A 21 1121 21 HOH HOH . D 4 HOH A 22 1122 22 HOH HOH . D 4 HOH A 23 1123 23 HOH HOH . D 4 HOH A 24 1124 24 HOH HOH . D 4 HOH A 25 1125 25 HOH HOH . D 4 HOH A 26 1126 26 HOH HOH . D 4 HOH A 27 1127 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 -5.716 -4.477 17.19 0.8 56.58 ? PA NAD 1001 A 1 HETATM 2 O O1A NAD . . . B 2 -4.767 -3.667 17.87 0.8 56.11 ? O1A NAD 1001 A 1 HETATM 3 O O2A NAD . . . B 2 -5.458 -5.888 17.089 0.8 56 ? O2A NAD 1001 A 1 HETATM 4 O O5B NAD . . . B 2 -7.114 -4.301 17.84 0.8 55.49 ? O5B NAD 1001 A 1 HETATM 5 C C5B NAD . . . B 2 -7.938 -5.376 18.313 0.8 52.59 ? C5B NAD 1001 A 1 HETATM 6 C C4B NAD . . . B 2 -9.121 -4.944 19.207 0.8 49.92 ? C4B NAD 1001 A 1 HETATM 7 O O4B NAD . . . B 2 -10.043 -5.99 19.225 0.8 49.54 ? O4B NAD 1001 A 1 HETATM 8 C C3B NAD . . . B 2 -8.771 -4.901 20.622 0.8 48.6 ? C3B NAD 1001 A 1 HETATM 9 O O3B NAD . . . B 2 -9.592 -4.003 21.129 0.8 47.72 ? O3B NAD 1001 A 1 HETATM 10 C C2B NAD . . . B 2 -9.306 -6.166 21.118 0.8 48.03 ? C2B NAD 1001 A 1 HETATM 11 O O2B NAD . . . B 2 -9.603 -6.034 22.429 0.8 46.88 ? O2B NAD 1001 A 1 HETATM 12 C C1B NAD . . . B 2 -10.539 -6.098 20.474 0.8 48.86 ? C1B NAD 1001 A 1 HETATM 13 N N9A NAD . . . B 2 -11.148 -7.4 20.528 0.8 49.53 ? N9A NAD 1001 A 1 HETATM 14 C C8A NAD . . . B 2 -10.465 -8.559 20.151 0.8 49.26 ? C8A NAD 1001 A 1 HETATM 15 N N7A NAD . . . B 2 -11.396 -9.591 20.394 0.8 49.34 ? N7A NAD 1001 A 1 HETATM 16 C C5A NAD . . . B 2 -12.482 -9.062 20.89 0.8 48.91 ? C5A NAD 1001 A 1 HETATM 17 C C6A NAD . . . B 2 -13.619 -9.621 21.227 0.8 48.15 ? C6A NAD 1001 A 1 HETATM 18 N N6A NAD . . . B 2 -13.701 -10.91 21.084 0.8 47.38 ? N6A NAD 1001 A 1 HETATM 19 N N1A NAD . . . B 2 -14.614 -8.953 21.736 0.8 48.09 ? N1A NAD 1001 A 1 HETATM 20 C C2A NAD . . . B 2 -14.482 -7.62 21.888 0.8 48.71 ? C2A NAD 1001 A 1 HETATM 21 N N3A NAD . . . B 2 -13.325 -7.028 21.469 0.8 49.59 ? N3A NAD 1001 A 1 HETATM 22 C C4A NAD . . . B 2 -12.331 -7.755 20.985 0.8 49.44 ? C4A NAD 1001 A 1 HETATM 23 O O3 NAD . . . B 2 -5.962 -4.008 15.725 0.8 58.37 ? O3 NAD 1001 A 1 HETATM 24 P PN NAD . . . B 2 -5.664 -2.717 14.972 0.8 59.41 ? PN NAD 1001 A 1 HETATM 25 O O1N NAD . . . B 2 -4.263 -2.563 14.801 0.8 59.5 ? O1N NAD 1001 A 1 HETATM 26 O O2N NAD . . . B 2 -6.515 -1.678 15.411 0.8 59.49 ? O2N NAD 1001 A 1 HETATM 27 O O5D NAD . . . B 2 -6.243 -2.88 13.633 0.8 60.65 ? O5D NAD 1001 A 1 HETATM 28 C C5D NAD . . . B 2 -7.661 -2.71 13.578 0.8 63.44 ? C5D NAD 1001 A 1 HETATM 29 C C4D NAD . . . B 2 -8.198 -2.861 12.163 0.8 64.64 ? C4D NAD 1001 A 1 HETATM 30 O O4D NAD . . . B 2 -7.058 -2.605 11.413 0.8 66.11 ? O4D NAD 1001 A 1 HETATM 31 C C3D NAD . . . B 2 -8.458 -4.281 11.918 0.8 65.04 ? C3D NAD 1001 A 1 HETATM 32 O O3D NAD . . . B 2 -9.804 -4.326 11.56 0.8 63.98 ? O3D NAD 1001 A 1 HETATM 33 C C2D NAD . . . B 2 -7.464 -4.654 10.789 0.8 65.85 ? C2D NAD 1001 A 1 HETATM 34 O O2D NAD . . . B 2 -8.129 -5.341 9.82 0.8 65.93 ? O2D NAD 1001 A 1 HETATM 35 C C1D NAD . . . B 2 -7.182 -3.33 10.222 1 66.55 ? C1D NAD 1001 A 1 HETATM 36 N N1N NAD . . . B 2 -5.855 -3.03 9.591 0.8 67.75 ? N1N NAD 1001 A 1 HETATM 37 C C2N NAD . . . B 2 -4.761 -3.919 9.427 0.8 67.95 ? C2N NAD 1001 A 1 HETATM 38 C C3N NAD . . . B 2 -3.608 -3.377 8.822 0.8 67.58 ? C3N NAD 1001 A 1 HETATM 39 C C7N NAD . . . B 2 -2.489 -4.111 8.55 0.8 67.15 ? C7N NAD 1001 A 1 HETATM 40 O O7N NAD . . . B 2 -2.6 -5.444 8.376 0.8 65.99 ? O7N NAD 1001 A 1 HETATM 41 N N7N NAD . . . B 2 -1.465 -3.356 8.268 0.8 66.57 ? N7N NAD 1001 A 1 HETATM 42 C C4N NAD . . . B 2 -3.519 -2.042 8.407 0.8 68.12 ? C4N NAD 1001 A 1 HETATM 43 C C5N NAD . . . B 2 -4.564 -1.176 8.542 0.8 67.73 ? C5N NAD 1001 A 1 HETATM 44 C C6N NAD . . . B 2 -5.697 -1.697 9.142 0.8 67.79 ? C6N NAD 1001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 44 #