data_4EV0 # _model_server_result.job_id tfFbFlXboldi60DXOkdYcQ _model_server_result.datetime_utc '2024-12-26 20:57:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ev0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4EV0 # _exptl.entry_id 4EV0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4EV0 _cell.length_a 46.25 _cell.length_b 94.842 _cell.length_c 121.439 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EV0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id O1 _struct_conn.ptnr1_label_comp_id SO4 _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SO4 _struct_conn.ptnr1_auth_seq_id 302 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id MG _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 304 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.816 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 4EV0 _atom_sites.fract_transf_matrix[1][1] 0.021622 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010544 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CMP A 1 301 1 CMP CMP . D 3 SO4 A 1 302 3 SO4 SO4 . E 3 SO4 A 1 303 4 SO4 SO4 . F 4 MG A 1 304 1 MG MG . G 2 CMP D 1 301 1 CMP CMP . H 3 SO4 D 1 302 1 SO4 SO4 . I 3 SO4 D 1 303 2 SO4 SO4 . J 3 SO4 D 1 304 5 SO4 SO4 . K 5 HOH A 1 401 2 HOH HOH . K 5 HOH A 2 402 5 HOH HOH . K 5 HOH A 3 403 7 HOH HOH . K 5 HOH A 4 404 8 HOH HOH . K 5 HOH A 5 405 12 HOH HOH . K 5 HOH A 6 406 13 HOH HOH . K 5 HOH A 7 407 16 HOH HOH . K 5 HOH A 8 408 17 HOH HOH . K 5 HOH A 9 409 18 HOH HOH . K 5 HOH A 10 410 21 HOH HOH . K 5 HOH A 11 411 22 HOH HOH . K 5 HOH A 12 412 23 HOH HOH . K 5 HOH A 13 413 25 HOH HOH . K 5 HOH A 14 414 26 HOH HOH . K 5 HOH A 15 415 28 HOH HOH . K 5 HOH A 16 416 31 HOH HOH . K 5 HOH A 17 417 33 HOH HOH . K 5 HOH A 18 418 34 HOH HOH . K 5 HOH A 19 419 36 HOH HOH . K 5 HOH A 20 420 37 HOH HOH . K 5 HOH A 21 421 38 HOH HOH . K 5 HOH A 22 422 39 HOH HOH . K 5 HOH A 23 423 44 HOH HOH . K 5 HOH A 24 424 48 HOH HOH . K 5 HOH A 25 425 52 HOH HOH . K 5 HOH A 26 426 53 HOH HOH . K 5 HOH A 27 427 58 HOH HOH . K 5 HOH A 28 428 60 HOH HOH . K 5 HOH A 29 429 64 HOH HOH . K 5 HOH A 30 430 65 HOH HOH . K 5 HOH A 31 431 66 HOH HOH . K 5 HOH A 32 432 67 HOH HOH . K 5 HOH A 33 433 69 HOH HOH . K 5 HOH A 34 434 75 HOH HOH . K 5 HOH A 35 435 76 HOH HOH . K 5 HOH A 36 436 77 HOH HOH . K 5 HOH A 37 437 79 HOH HOH . K 5 HOH A 38 438 80 HOH HOH . K 5 HOH A 39 439 81 HOH HOH . K 5 HOH A 40 440 85 HOH HOH . K 5 HOH A 41 441 86 HOH HOH . K 5 HOH A 42 442 88 HOH HOH . L 5 HOH D 1 401 1 HOH HOH . L 5 HOH D 2 402 3 HOH HOH . L 5 HOH D 3 403 4 HOH HOH . L 5 HOH D 4 404 6 HOH HOH . L 5 HOH D 5 405 9 HOH HOH . L 5 HOH D 6 406 10 HOH HOH . L 5 HOH D 7 407 11 HOH HOH . L 5 HOH D 8 408 14 HOH HOH . L 5 HOH D 9 409 15 HOH HOH . L 5 HOH D 10 410 19 HOH HOH . L 5 HOH D 11 411 20 HOH HOH . L 5 HOH D 12 412 24 HOH HOH . L 5 HOH D 13 413 27 HOH HOH . L 5 HOH D 14 414 29 HOH HOH . L 5 HOH D 15 415 30 HOH HOH . L 5 HOH D 16 416 32 HOH HOH . L 5 HOH D 17 417 35 HOH HOH . L 5 HOH D 18 418 40 HOH HOH . L 5 HOH D 19 419 41 HOH HOH . L 5 HOH D 20 420 42 HOH HOH . L 5 HOH D 21 421 43 HOH HOH . L 5 HOH D 22 422 45 HOH HOH . L 5 HOH D 23 423 46 HOH HOH . L 5 HOH D 24 424 47 HOH HOH . L 5 HOH D 25 425 49 HOH HOH . L 5 HOH D 26 426 50 HOH HOH . L 5 HOH D 27 427 51 HOH HOH . L 5 HOH D 28 428 55 HOH HOH . L 5 HOH D 29 429 57 HOH HOH . L 5 HOH D 30 430 62 HOH HOH . L 5 HOH D 31 431 68 HOH HOH . L 5 HOH D 32 432 70 HOH HOH . L 5 HOH D 33 433 71 HOH HOH . L 5 HOH D 34 434 72 HOH HOH . L 5 HOH D 35 435 73 HOH HOH . L 5 HOH D 36 436 74 HOH HOH . L 5 HOH D 37 437 82 HOH HOH . L 5 HOH D 38 438 83 HOH HOH . L 5 HOH D 39 439 84 HOH HOH . L 5 HOH D 40 440 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . C 2 39.723 42.075 47.361 1 41.84 ? P CMP 301 A 1 HETATM 2 O O1P CMP . . . C 2 40.927 42.612 46.633 1 43.09 ? O1P CMP 301 A 1 HETATM 3 O O2P CMP . . . C 2 39.874 41.662 48.819 1 42.53 ? O2P CMP 301 A 1 HETATM 4 O O5' CMP . . . C 2 39.062 40.862 46.53 1 50.81 ? O5' CMP 301 A 1 HETATM 5 C C5' CMP . . . C 2 37.716 40.453 46.783 1 46.19 ? C5' CMP 301 A 1 HETATM 6 C C4' CMP . . . C 2 36.857 41.664 46.855 1 46.26 ? C4' CMP 301 A 1 HETATM 7 O O4' CMP . . . C 2 35.543 41.398 47.378 1 48.95 ? O4' CMP 301 A 1 HETATM 8 C C3' CMP . . . C 2 37.36 42.716 47.79 1 40.57 ? C3' CMP 301 A 1 HETATM 9 O O3' CMP . . . C 2 38.589 43.259 47.347 1 36.24 ? O3' CMP 301 A 1 HETATM 10 C C2' CMP . . . C 2 36.177 43.66 47.801 1 41.88 ? C2' CMP 301 A 1 HETATM 11 O O2' CMP . . . C 2 36.088 44.343 46.562 1 43.64 ? O2' CMP 301 A 1 HETATM 12 C C1' CMP . . . C 2 35.024 42.637 47.861 1 50.2 ? C1' CMP 301 A 1 HETATM 13 N N9 CMP . . . C 2 34.518 42.44 49.23 1 59.33 ? N9 CMP 301 A 1 HETATM 14 C C8 CMP . . . C 2 35.179 41.818 50.218 1 64.94 ? C8 CMP 301 A 1 HETATM 15 N N7 CMP . . . C 2 34.442 41.775 51.356 1 66.48 ? N7 CMP 301 A 1 HETATM 16 C C5 CMP . . . C 2 33.272 42.369 51.099 1 65.55 ? C5 CMP 301 A 1 HETATM 17 C C6 CMP . . . C 2 32.049 42.641 51.883 1 71.28 ? C6 CMP 301 A 1 HETATM 18 N N6 CMP . . . C 2 31.964 42.258 53.188 1 73.2 ? N6 CMP 301 A 1 HETATM 19 N N1 CMP . . . C 2 31.047 43.289 51.242 1 73.13 ? N1 CMP 301 A 1 HETATM 20 C C2 CMP . . . C 2 31.15 43.667 49.946 1 70.03 ? C2 CMP 301 A 1 HETATM 21 N N3 CMP . . . C 2 32.236 43.441 49.178 1 64.87 ? N3 CMP 301 A 1 HETATM 22 C C4 CMP . . . C 2 33.318 42.806 49.694 1 62.64 ? C4 CMP 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #