data_4EW3
#
_model_server_result.job_id            CANFMVf2Isk2I7YPy3nkgg 
_model_server_result.datetime_utc      '2024-12-21 16:13:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ew3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    4EW3 
#
_exptl.entry_id    4EW3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              477.534 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-({4-[(1R)-4-(2,4-diamino-6-oxo-1,6-dihydropyrimidin-5-yl)-1-(methylsulfanyl)butyl]phenyl}carbonyl)-L-glutamic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4EW3 
_cell.length_a            78.124 
_cell.length_b            78.124 
_cell.length_c            230.048 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4EW3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_565 x,x-y+1,-z+5/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -39.062 67.657369 191.706667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H27 N5 O6 S' 
_chem_comp.formula_weight    477.534 
_chem_comp.id                DXZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-({4-[(1R)-4-(2,4-diamino-6-oxo-1,6-dihydropyrimidin-5-yl)-1-(methylsulfanyl)butyl]phenyl}carbonyl)-L-glutamic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OE1 CD DXZ doub 83 n n 
CD OE2 DXZ sing 84 n n 
CD CG DXZ sing 85 n n 
CG CB DXZ sing 86 n n 
CB CA DXZ sing 87 n n 
CA N DXZ sing 88 n n 
CA C DXZ sing 89 n n 
SAV CAA DXZ sing 90 n n 
SAV CBG DXZ sing 91 n n 
OAF CAY DXZ doub 92 n n 
N CAY DXZ sing 93 n n 
CAY CBB DXZ sing 94 n n 
CBB CAK DXZ doub 95 n y 
CBB CAJ DXZ sing 96 n y 
CAK CAM DXZ sing 97 n y 
CAJ CAL DXZ doub 98 n y 
CAM CBC DXZ doub 99 n y 
C O DXZ doub 100 n n 
C OXT DXZ sing 101 n n 
CAL CBC DXZ sing 102 n y 
CBC CBG DXZ sing 103 n n 
CBG CAQ DXZ sing 104 n n 
CAQ CAN DXZ sing 105 n n 
CAN CAP DXZ sing 106 n n 
CAP CBD DXZ sing 107 n n 
NAC CBA DXZ sing 108 n n 
CBD CBA DXZ doub 109 n n 
CBD CBE DXZ sing 110 n n 
CBA NAS DXZ sing 111 n n 
NAS CAZ DXZ doub 112 n n 
CBE OAG DXZ doub 113 n n 
CBE NAU DXZ sing 114 n n 
CAZ NAU DXZ sing 115 n n 
CAZ NAB DXZ sing 116 n n 
CG H1G DXZ sing 117 n n 
CG H2G DXZ sing 118 n n 
CB H1B DXZ sing 119 n n 
CB H2B DXZ sing 120 n n 
CA HA DXZ sing 121 n n 
N HN DXZ sing 122 n n 
CAK HAK DXZ sing 123 n n 
CAM HAM DXZ sing 124 n n 
CAJ HAJ DXZ sing 125 n n 
CAL HAL DXZ sing 126 n n 
CBG HBG DXZ sing 127 n n 
CAA H1AA DXZ sing 128 n n 
CAA H2AA DXZ sing 129 n n 
CAA H3AA DXZ sing 130 n n 
CAQ H1AQ DXZ sing 131 n n 
CAQ H2AQ DXZ sing 132 n n 
CAN H1AN DXZ sing 133 n n 
CAN H2AN DXZ sing 134 n n 
CAP H1AP DXZ sing 135 n n 
CAP H2AP DXZ sing 136 n n 
NAU HNAU DXZ sing 137 n n 
NAB H1AB DXZ sing 138 n n 
NAB H2AB DXZ sing 139 n n 
NAC H1AC DXZ sing 140 n n 
NAC H2AC DXZ sing 141 n n 
OE2 HOE2 DXZ sing 142 n n 
OXT HOXT DXZ sing 143 n n 
#
_atom_sites.entry_id                     4EW3 
_atom_sites.fract_transf_matrix[1][1]    0.0128 
_atom_sites.fract_transf_matrix[1][2]    0.00739 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01478 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004347 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 301 1 PO4 PO4 . 
C 3 SO4 A 1 302 1 SO4 SO4 . 
D 3 SO4 A 1 303 3 SO4 SO4 . 
E 4 DXZ A 1 304 1 DXZ DXZ . 
F 5 HOH A 1 401 1 HOH HOH . 
F 5 HOH A 2 402 2 HOH HOH . 
F 5 HOH A 3 403 3 HOH HOH . 
F 5 HOH A 4 404 4 HOH HOH . 
F 5 HOH A 5 405 5 HOH HOH . 
F 5 HOH A 6 406 6 HOH HOH . 
F 5 HOH A 7 407 7 HOH HOH . 
F 5 HOH A 8 408 8 HOH HOH . 
F 5 HOH A 9 409 9 HOH HOH . 
F 5 HOH A 10 410 10 HOH HOH . 
F 5 HOH A 11 411 11 HOH HOH . 
F 5 HOH A 12 412 12 HOH HOH . 
F 5 HOH A 13 413 13 HOH HOH . 
F 5 HOH A 14 414 15 HOH HOH . 
F 5 HOH A 15 415 16 HOH HOH . 
F 5 HOH A 16 416 17 HOH HOH . 
F 5 HOH A 17 417 18 HOH HOH . 
F 5 HOH A 18 418 19 HOH HOH . 
F 5 HOH A 19 419 20 HOH HOH . 
F 5 HOH A 20 420 21 HOH HOH . 
F 5 HOH A 21 421 22 HOH HOH . 
F 5 HOH A 22 422 23 HOH HOH . 
F 5 HOH A 23 423 24 HOH HOH . 
F 5 HOH A 24 424 25 HOH HOH . 
F 5 HOH A 25 425 26 HOH HOH . 
F 5 HOH A 26 426 27 HOH HOH . 
F 5 HOH A 27 427 28 HOH HOH . 
F 5 HOH A 28 428 29 HOH HOH . 
F 5 HOH A 29 429 30 HOH HOH . 
F 5 HOH A 30 430 31 HOH HOH . 
F 5 HOH A 31 431 32 HOH HOH . 
F 5 HOH A 32 432 33 HOH HOH . 
F 5 HOH A 33 433 34 HOH HOH . 
F 5 HOH A 34 434 35 HOH HOH . 
F 5 HOH A 35 435 36 HOH HOH . 
F 5 HOH A 36 436 37 HOH HOH . 
F 5 HOH A 37 437 38 HOH HOH . 
F 5 HOH A 38 438 39 HOH HOH . 
F 5 HOH A 39 439 40 HOH HOH . 
F 5 HOH A 40 440 41 HOH HOH . 
F 5 HOH A 41 441 42 HOH HOH . 
F 5 HOH A 42 442 44 HOH HOH . 
F 5 HOH A 43 443 45 HOH HOH . 
F 5 HOH A 44 444 46 HOH HOH . 
F 5 HOH A 45 445 47 HOH HOH . 
F 5 HOH A 46 446 48 HOH HOH . 
F 5 HOH A 47 447 49 HOH HOH . 
F 5 HOH A 48 448 50 HOH HOH . 
F 5 HOH A 49 449 51 HOH HOH . 
F 5 HOH A 50 450 52 HOH HOH . 
F 5 HOH A 51 451 53 HOH HOH . 
F 5 HOH A 52 452 54 HOH HOH . 
F 5 HOH A 53 453 55 HOH HOH . 
F 5 HOH A 54 454 56 HOH HOH . 
F 5 HOH A 55 455 58 HOH HOH . 
F 5 HOH A 56 456 59 HOH HOH . 
F 5 HOH A 57 457 60 HOH HOH . 
F 5 HOH A 58 458 61 HOH HOH . 
F 5 HOH A 59 459 62 HOH HOH . 
F 5 HOH A 60 460 63 HOH HOH . 
F 5 HOH A 61 461 64 HOH HOH . 
F 5 HOH A 62 462 65 HOH HOH . 
F 5 HOH A 63 463 66 HOH HOH . 
F 5 HOH A 64 464 67 HOH HOH . 
F 5 HOH A 65 465 68 HOH HOH . 
F 5 HOH A 66 466 69 HOH HOH . 
F 5 HOH A 67 467 70 HOH HOH . 
F 5 HOH A 68 468 71 HOH HOH . 
F 5 HOH A 69 469 72 HOH HOH . 
F 5 HOH A 70 470 73 HOH HOH . 
F 5 HOH A 71 471 74 HOH HOH . 
F 5 HOH A 72 472 75 HOH HOH . 
F 5 HOH A 73 473 76 HOH HOH . 
F 5 HOH A 74 474 78 HOH HOH . 
F 5 HOH A 75 475 79 HOH HOH . 
F 5 HOH A 76 476 80 HOH HOH . 
F 5 HOH A 77 477 81 HOH HOH . 
F 5 HOH A 78 478 82 HOH HOH . 
F 5 HOH A 79 479 83 HOH HOH . 
F 5 HOH A 80 480 84 HOH HOH . 
F 5 HOH A 81 481 85 HOH HOH . 
F 5 HOH A 82 482 86 HOH HOH . 
F 5 HOH A 83 483 87 HOH HOH . 
F 5 HOH A 84 484 89 HOH HOH . 
F 5 HOH A 85 485 90 HOH HOH . 
F 5 HOH A 86 486 91 HOH HOH . 
F 5 HOH A 87 487 92 HOH HOH . 
F 5 HOH A 88 488 93 HOH HOH . 
F 5 HOH A 89 489 94 HOH HOH . 
F 5 HOH A 90 490 95 HOH HOH . 
F 5 HOH A 91 491 96 HOH HOH . 
F 5 HOH A 92 492 97 HOH HOH . 
F 5 HOH A 93 493 98 HOH HOH . 
F 5 HOH A 94 494 99 HOH HOH . 
F 5 HOH A 95 495 100 HOH HOH . 
F 5 HOH A 96 496 101 HOH HOH . 
F 5 HOH A 97 497 103 HOH HOH . 
F 5 HOH A 98 498 104 HOH HOH . 
F 5 HOH A 99 499 105 HOH HOH . 
F 5 HOH A 100 500 106 HOH HOH . 
F 5 HOH A 101 501 107 HOH HOH . 
F 5 HOH A 102 502 108 HOH HOH . 
F 5 HOH A 103 503 109 HOH HOH . 
F 5 HOH A 104 504 110 HOH HOH . 
F 5 HOH A 105 505 113 HOH HOH . 
F 5 HOH A 106 506 114 HOH HOH . 
F 5 HOH A 107 507 115 HOH HOH . 
F 5 HOH A 108 508 116 HOH HOH . 
F 5 HOH A 109 509 117 HOH HOH . 
F 5 HOH A 110 510 118 HOH HOH . 
F 5 HOH A 111 511 119 HOH HOH . 
F 5 HOH A 112 512 121 HOH HOH . 
F 5 HOH A 113 513 122 HOH HOH . 
F 5 HOH A 114 514 123 HOH HOH . 
F 5 HOH A 115 515 124 HOH HOH . 
F 5 HOH A 116 516 125 HOH HOH . 
F 5 HOH A 117 517 126 HOH HOH . 
F 5 HOH A 118 518 127 HOH HOH . 
F 5 HOH A 119 519 128 HOH HOH . 
F 5 HOH A 120 520 129 HOH HOH . 
F 5 HOH A 121 521 131 HOH HOH . 
F 5 HOH A 122 522 132 HOH HOH . 
F 5 HOH A 123 523 133 HOH HOH . 
F 5 HOH A 124 524 136 HOH HOH . 
F 5 HOH A 125 525 137 HOH HOH . 
F 5 HOH A 126 526 138 HOH HOH . 
F 5 HOH A 127 527 140 HOH HOH . 
F 5 HOH A 128 528 142 HOH HOH . 
F 5 HOH A 129 529 143 HOH HOH . 
F 5 HOH A 130 530 144 HOH HOH . 
F 5 HOH A 131 531 146 HOH HOH . 
F 5 HOH A 132 532 147 HOH HOH . 
F 5 HOH A 133 533 149 HOH HOH . 
F 5 HOH A 134 534 150 HOH HOH . 
F 5 HOH A 135 535 151 HOH HOH . 
F 5 HOH A 136 536 152 HOH HOH . 
F 5 HOH A 137 537 153 HOH HOH . 
F 5 HOH A 138 538 154 HOH HOH . 
F 5 HOH A 139 539 156 HOH HOH . 
F 5 HOH A 140 540 157 HOH HOH . 
F 5 HOH A 141 541 158 HOH HOH . 
F 5 HOH A 142 542 159 HOH HOH . 
F 5 HOH A 143 543 160 HOH HOH . 
F 5 HOH A 144 544 163 HOH HOH . 
F 5 HOH A 145 545 164 HOH HOH . 
F 5 HOH A 146 546 165 HOH HOH . 
F 5 HOH A 147 547 167 HOH HOH . 
F 5 HOH A 148 548 168 HOH HOH . 
F 5 HOH A 149 549 169 HOH HOH . 
F 5 HOH A 150 550 170 HOH HOH . 
F 5 HOH A 151 551 171 HOH HOH . 
F 5 HOH A 152 552 173 HOH HOH . 
F 5 HOH A 153 553 174 HOH HOH . 
F 5 HOH A 154 554 176 HOH HOH . 
F 5 HOH A 155 555 177 HOH HOH . 
F 5 HOH A 156 556 178 HOH HOH . 
F 5 HOH A 157 557 179 HOH HOH . 
F 5 HOH A 158 558 180 HOH HOH . 
F 5 HOH A 159 559 181 HOH HOH . 
F 5 HOH A 160 560 182 HOH HOH . 
F 5 HOH A 161 561 183 HOH HOH . 
F 5 HOH A 162 562 184 HOH HOH . 
F 5 HOH A 163 563 185 HOH HOH . 
F 5 HOH A 164 564 186 HOH HOH . 
F 5 HOH A 165 565 187 HOH HOH . 
F 5 HOH A 166 566 188 HOH HOH . 
F 5 HOH A 167 567 189 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OE1 DXZ . . . E 4 1.385 72.172 88.249 1 53.25 ? OE1 DXZ 304 A 1 
HETATM 2 C CD DXZ . . . E 4 1.058 72.055 89.461 1 50.28 ? CD DXZ 304 A 1 
HETATM 3 O OE2 DXZ . . . E 4 0.081 72.66 90.011 1 49.68 ? OE2 DXZ 304 A 1 
HETATM 4 C CG DXZ . . . E 4 1.987 71.112 90.314 1 46.47 ? CG DXZ 304 A 1 
HETATM 5 C CB DXZ . . . E 4 3.113 71.866 91.041 1 42.7 ? CB DXZ 304 A 1 
HETATM 6 C CA DXZ . . . E 4 3.697 71.078 92.234 1 41.5 ? CA DXZ 304 A 1 
HETATM 7 C C DXZ . . . E 4 3.832 72.026 93.429 1 40.98 ? C DXZ 304 A 1 
HETATM 8 O OXT DXZ . . . E 4 2.937 72.028 94.292 1 39.83 ? OXT DXZ 304 A 1 
HETATM 9 O O DXZ . . . E 4 4.824 72.769 93.43 1 41.3 ? O DXZ 304 A 1 
HETATM 10 N N DXZ . . . E 4 2.914 69.868 92.554 1 40.02 ? N DXZ 304 A 1 
HETATM 11 C CAY DXZ . . . E 4 3.512 68.694 92.663 1 40.08 ? CAY DXZ 304 A 1 
HETATM 12 O OAF DXZ . . . E 4 4.722 68.542 92.491 1 40.61 ? OAF DXZ 304 A 1 
HETATM 13 C CBB DXZ . . . E 4 2.612 67.536 92.99 1 38.51 ? CBB DXZ 304 A 1 
HETATM 14 C CAK DXZ . . . E 4 1.264 67.735 93.127 1 38.98 ? CAK DXZ 304 A 1 
HETATM 15 C CAM DXZ . . . E 4 0.442 66.652 93.419 1 39.75 ? CAM DXZ 304 A 1 
HETATM 16 C CAJ DXZ . . . E 4 3.114 66.262 93.195 1 38.79 ? CAJ DXZ 304 A 1 
HETATM 17 C CAL DXZ . . . E 4 2.292 65.18 93.5 1 38.84 ? CAL DXZ 304 A 1 
HETATM 18 C CBC DXZ . . . E 4 0.924 65.372 93.615 1 39.84 ? CBC DXZ 304 A 1 
HETATM 19 C CBG DXZ . . . E 4 -0.037 64.22 93.968 1 42.36 ? CBG DXZ 304 A 1 
HETATM 20 S SAV DXZ . . . E 4 -0.962 63.68 92.475 1 51.12 ? SAV DXZ 304 A 1 
HETATM 21 C CAA DXZ . . . E 4 -2.573 64.473 92.657 1 49.75 ? CAA DXZ 304 A 1 
HETATM 22 C CAQ DXZ . . . E 4 -1.041 64.615 95.111 1 41.54 ? CAQ DXZ 304 A 1 
HETATM 23 C CAN DXZ . . . E 4 -0.375 64.599 96.478 1 35.58 ? CAN DXZ 304 A 1 
HETATM 24 C CAP DXZ . . . E 4 -1.31 64.865 97.697 1 34.23 ? CAP DXZ 304 A 1 
HETATM 25 C CBD DXZ . . . E 4 -0.447 65.602 98.703 1 30.79 ? CBD DXZ 304 A 1 
HETATM 26 C CBE DXZ . . . E 4 0.335 64.892 99.62 1 30.62 ? CBE DXZ 304 A 1 
HETATM 27 O OAG DXZ . . . E 4 0.32 63.662 99.664 1 30.9 ? OAG DXZ 304 A 1 
HETATM 28 N NAU DXZ . . . E 4 1.122 65.559 100.511 1 28.96 ? NAU DXZ 304 A 1 
HETATM 29 C CAZ DXZ . . . E 4 1.187 66.941 100.49 1 29.76 ? CAZ DXZ 304 A 1 
HETATM 30 N NAB DXZ . . . E 4 1.987 67.565 101.343 1 30.77 ? NAB DXZ 304 A 1 
HETATM 31 N NAS DXZ . . . E 4 0.437 67.631 99.605 1 28.96 ? NAS DXZ 304 A 1 
HETATM 32 C CBA DXZ . . . E 4 -0.36 67.003 98.722 1 30.72 ? CBA DXZ 304 A 1 
HETATM 33 N NAC DXZ . . . E 4 -1.076 67.75 97.849 1 29.43 ? NAC DXZ 304 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           33 
#