data_4EWH # _model_server_result.job_id ieGpIzHl6M-6sye7npqeeQ _model_server_result.datetime_utc '2025-07-02 07:13:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ewh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4EWH # _exptl.entry_id 4EWH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.671 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-{4-[2-(dimethylamino)ethoxy]phenyl}-N-(1,3-dithiolan-2-ylmethyl)-5-phenyl-7H-pyrrolo[2,3-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.29 _cell.angle_gamma 90 _cell.entry_id 4EWH _cell.length_a 201.202 _cell.length_b 42.48 _cell.length_c 71.031 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4EWH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,D,F 1 1 A,C,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 -x+1/2,y+1/2,-z -1 0 0 0 1 0 0 0 -1 100.601 21.24 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 167 B HIS 283 1_555 A N PTR 168 B PTR 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C PTR 168 B PTR 284 1_555 A N VAL 169 B VAL 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale3 B C HIS 167 A HIS 283 1_555 B N PTR 168 A PTR 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 B C PTR 168 A PTR 284 1_555 B N VAL 169 A VAL 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? # _chem_comp.formula 'C26 H29 N5 O S2' _chem_comp.formula_weight 491.671 _chem_comp.id T77 _chem_comp.mon_nstd_flag . _chem_comp.name 6-{4-[2-(dimethylamino)ethoxy]phenyl}-N-(1,3-dithiolan-2-ylmethyl)-5-phenyl-7H-pyrrolo[2,3-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 C30 T77 sing 319 n n C31 N32 T77 sing 320 n n C30 O27 T77 sing 321 n n N32 C33 T77 sing 322 n n N32 C34 T77 sing 323 n n O27 C24 T77 sing 324 n n C21 C24 T77 doub 325 n y C21 C15 T77 sing 326 n y C24 C20 T77 sing 327 n y C15 C7 T77 doub 328 n y C20 C14 T77 doub 329 n y C7 C14 T77 sing 330 n y C7 C3 T77 sing 331 n n N8 C3 T77 sing 332 n y N8 C5 T77 sing 333 n y C3 C1 T77 doub 334 n y N11 C5 T77 doub 335 n y N11 C18 T77 sing 336 n y C5 C2 T77 sing 337 n y C1 C2 T77 sing 338 n y C1 C4 T77 sing 339 n n C18 N13 T77 doub 340 n y C2 C6 T77 doub 341 n y C4 C9 T77 doub 342 n y C4 C10 T77 sing 343 n y N13 C6 T77 sing 344 n y C9 C16 T77 sing 345 n y C6 N12 T77 sing 346 n n C10 C17 T77 doub 347 n y C16 C22 T77 doub 348 n y C17 C22 T77 sing 349 n y N12 C19 T77 sing 350 n n C19 C23 T77 sing 351 n n C23 S25 T77 sing 352 n n C23 S26 T77 sing 353 n n S25 C28 T77 sing 354 n n C28 C29 T77 sing 355 n n S26 C29 T77 sing 356 n n C34 H1 T77 sing 357 n n C34 H2 T77 sing 358 n n C34 H3 T77 sing 359 n n C33 H5 T77 sing 360 n n C33 H6 T77 sing 361 n n C33 H7 T77 sing 362 n n C31 H8 T77 sing 363 n n C31 H9 T77 sing 364 n n C30 H10 T77 sing 365 n n C30 H11 T77 sing 366 n n C21 H12 T77 sing 367 n n C15 H13 T77 sing 368 n n C20 H14 T77 sing 369 n n C14 H15 T77 sing 370 n n N8 H16 T77 sing 371 n n C18 H17 T77 sing 372 n n C9 H18 T77 sing 373 n n C16 H19 T77 sing 374 n n C22 H20 T77 sing 375 n n C17 H21 T77 sing 376 n n C10 H22 T77 sing 377 n n N12 H23 T77 sing 378 n n C19 H24 T77 sing 379 n n C19 H25 T77 sing 380 n n C23 H26 T77 sing 381 n n C28 H27 T77 sing 382 n n C28 H28 T77 sing 383 n n C29 H29 T77 sing 384 n n C29 H30 T77 sing 385 n n # _atom_sites.entry_id 4EWH _atom_sites.fract_transf_matrix[1][1] 0.00497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00046 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02354 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014139 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 T77 B 1 401 1 T77 T77 . D 2 T77 A 1 401 1 T77 T77 . E 3 HOH B 1 501 2 HOH HOH . E 3 HOH B 2 502 3 HOH HOH . E 3 HOH B 3 503 4 HOH HOH . E 3 HOH B 4 504 7 HOH HOH . E 3 HOH B 5 505 8 HOH HOH . E 3 HOH B 6 506 9 HOH HOH . E 3 HOH B 7 507 10 HOH HOH . E 3 HOH B 8 508 11 HOH HOH . E 3 HOH B 9 509 12 HOH HOH . E 3 HOH B 10 510 13 HOH HOH . E 3 HOH B 11 511 14 HOH HOH . E 3 HOH B 12 512 18 HOH HOH . E 3 HOH B 13 513 19 HOH HOH . E 3 HOH B 14 514 21 HOH HOH . E 3 HOH B 15 515 22 HOH HOH . E 3 HOH B 16 516 23 HOH HOH . F 3 HOH A 1 501 1 HOH HOH . F 3 HOH A 2 502 5 HOH HOH . F 3 HOH A 3 503 6 HOH HOH . F 3 HOH A 4 504 15 HOH HOH . F 3 HOH A 5 505 16 HOH HOH . F 3 HOH A 6 506 17 HOH HOH . F 3 HOH A 7 507 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C34 T77 . . . D 2 82.01 2.557 -28.785 1 56.69 ? C34 T77 401 A 1 HETATM 2 N N32 T77 . . . D 2 81.254 1.405 -29.261 1 57.33 ? N32 T77 401 A 1 HETATM 3 C C33 T77 . . . D 2 81.812 0.063 -29.108 1 60.62 ? C33 T77 401 A 1 HETATM 4 C C31 T77 . . . D 2 79.97 1.526 -29.906 1 54.82 ? C31 T77 401 A 1 HETATM 5 C C30 T77 . . . D 2 79.391 2.868 -29.522 1 56.29 ? C30 T77 401 A 1 HETATM 6 O O27 T77 . . . D 2 78.656 2.624 -28.326 1 54.23 ? O27 T77 401 A 1 HETATM 7 C C24 T77 . . . D 2 78.057 3.636 -27.647 1 47.76 ? C24 T77 401 A 1 HETATM 8 C C21 T77 . . . D 2 77.941 4.899 -28.199 1 44.48 ? C21 T77 401 A 1 HETATM 9 C C15 T77 . . . D 2 77.342 5.886 -27.425 1 42.32 ? C15 T77 401 A 1 HETATM 10 C C20 T77 . . . D 2 77.589 3.332 -26.37 1 46.8 ? C20 T77 401 A 1 HETATM 11 C C14 T77 . . . D 2 76.993 4.335 -25.614 1 43.53 ? C14 T77 401 A 1 HETATM 12 C C7 T77 . . . D 2 76.912 5.615 -26.121 1 41.73 ? C7 T77 401 A 1 HETATM 13 C C3 T77 . . . D 2 76.264 6.737 -25.365 1 38.01 ? C3 T77 401 A 1 HETATM 14 N N8 T77 . . . D 2 75.944 7.965 -25.889 1 33.53 ? N8 T77 401 A 1 HETATM 15 C C5 T77 . . . D 2 75.378 8.603 -24.85 1 34.93 ? C5 T77 401 A 1 HETATM 16 N N11 T77 . . . D 2 74.887 9.945 -24.873 1 35.59 ? N11 T77 401 A 1 HETATM 17 C C18 T77 . . . D 2 74.354 10.392 -23.743 1 32.79 ? C18 T77 401 A 1 HETATM 18 N N13 T77 . . . D 2 74.282 9.657 -22.63 1 28.43 ? N13 T77 401 A 1 HETATM 19 C C2 T77 . . . D 2 75.327 7.876 -23.699 1 34.51 ? C2 T77 401 A 1 HETATM 20 C C1 T77 . . . D 2 75.852 6.636 -24.003 1 33.78 ? C1 T77 401 A 1 HETATM 21 C C4 T77 . . . D 2 76.028 5.543 -23.001 1 27.97 ? C4 T77 401 A 1 HETATM 22 C C9 T77 . . . D 2 77.328 5.154 -22.623 1 27.1 ? C9 T77 401 A 1 HETATM 23 C C16 T77 . . . D 2 77.627 4.164 -21.679 1 22.14 ? C16 T77 401 A 1 HETATM 24 C C22 T77 . . . D 2 76.522 3.541 -21.074 1 24.37 ? C22 T77 401 A 1 HETATM 25 C C17 T77 . . . D 2 75.203 3.92 -21.409 1 27.33 ? C17 T77 401 A 1 HETATM 26 C C10 T77 . . . D 2 74.953 4.947 -22.355 1 28.86 ? C10 T77 401 A 1 HETATM 27 C C6 T77 . . . D 2 74.747 8.415 -22.55 1 31.69 ? C6 T77 401 A 1 HETATM 28 N N12 T77 . . . D 2 74.637 7.77 -21.366 1 32.27 ? N12 T77 401 A 1 HETATM 29 C C19 T77 . . . D 2 74.054 8.519 -20.245 1 29.13 ? C19 T77 401 A 1 HETATM 30 C C23 T77 . . . D 2 74.734 8.291 -18.906 1 32.49 ? C23 T77 401 A 1 HETATM 31 S S25 T77 . . . D 2 76.533 8.336 -18.897 1 37.47 ? S25 T77 401 A 1 HETATM 32 C C28 T77 . . . D 2 77.007 6.636 -18.834 1 32.96 ? C28 T77 401 A 1 HETATM 33 C C29 T77 . . . D 2 75.936 6.034 -17.96 1 33.01 ? C29 T77 401 A 1 HETATM 34 S S26 T77 . . . D 2 74.432 6.613 -18.644 1 34.6 ? S26 T77 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #